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Computer simulation of the hydrostatic skeleton. The physical equivalent, mathematics and application to worm-like forms.

The functional principles of a hydrostatic skeleton were combined to obtain a physical model which includes geometry, number and length-tension relationships of the elastic elements in the body wall, internal volume and internal pressure. The model skeleton with pre-set internal volume assumes a certain shape and develops a specific internal pressure in order to minimize the potential energy stored in the elastic elements. This shape is calculated as equilibrium state by using finite element methods and optimization techniques. This model is flexible enough to accommodate different geometries and length-tension-relationships of the elastic elements. Presently, the model is implemented with linear length-tension relationships and certain geometrical restrictions, such as uniform width over the entire animal, and rectangular cross sections; the general case is outlined. First simulations with the "unit-worm" yield stable solutions, i.e. stable shapes for all combinations of parameters tested so far. They define the conditions for bringing all muscles to an optimal operating point. We detected a pressure maximum with increasing volume, assessed the contribution of circular muscles to bending, and determined the shapes of animals with different muscle activations in each body half (Chapman-matrix). We summarize our results by the volume rule and stabilization rule, two simple concepts which predict changes in shape as the result of muscle activation.

Animals↗

Equilibrium sampling through membranes of freely dissolved copper concentrations with selective hollow fiber membranes and the spectrophotometric detection of a metal stripping agent.

A sensitive spectrophotometric method for the determination of freely dissolved copper concentrations in aqueous samples after preconcentration with hollow fiber membrane extraction has been developed. The method is based on the equilibrium sampling through a selective membrane into an acceptor solution containing 4-(pyridyl-2-azo)resorcinol (PAR), which serves as stripping agent and metal indicator. Negligible extraction of interferences and equilibrium enrichment of copper allowed for selective spectrophotometric determination of the Cu-PAR complex. Some important extraction parameters such as acceptor composition, shaking, equilibrium time, and sample volume were studied. The optimized methodology showed good linearity in the range of 5-100 microg/L, an enrichment factor of 93, good repeatability and reproducibility (RSDs < 6%, n = 6), and a detection limit of 4 microg/L. The cationic metals Ni2+, C(2+, Cd2+, Fe3+, Pb2+, Zn2+, and Mn2+ were shown not to interfere with the measurement of Cu2+. Measurements on samples containing mixtures of various ligands and cations were in good agreement with theoretically calculated concentrations, and the method was also applied to environmental samples. The developed technique requires less labor and less sophisticated equipment than conventional methods typically based on atomic absorption spectrometry or ICP.

Journal Article↗

Theoretical study on the second-order nonlinear optical properties of asymmetric spirosilabifluorene derivatives.

The equilibrium geometries of four asymmetric spirosilabifluorene derivatives are optimized by means of the DFT/B3LYP method with the 6-31G* basis sets in this paper. On the basis of the optimized structures, the electronic structure and second-order nonlinear optical properties are calculated by using time-dependent density-functional theory (TDDFT) based on the 6-31G* level combined with the sum-over-states (SOS) method. The results show that these compounds possess remarkably larger molecular second-order polarizabilities than typical organometallic and organic compounds, and replacement of a carbon atom with nitrogen within the conjugated substituent has a great influence on the second-order nonlinear optical properties. Analysis of the main contributions to the second-order polarizability suggests that charge transfer from the z-axis directions plays a key role in the nonlinear optical response. These compounds have a possibility to be excellent second-order nonlinear optical (NLO) materials from the standpoint of large beta values, small dipole moment, high transparency, and small dispersion behaviors.

Journal Article↗

How organisms do the right thing: The attractor hypothesis.

Neo-Darwinian theory is highly successful at explaining the emergence of adaptive traits over successive generations. However, there are reasons to doubt its efficacy in explaining the observed, impressively detailed adaptive responses of organisms to day-to-day changes in their surroundings. Also, the theory lacks a clear mechanism to account for both plasticity and canalization. In effect, there is a growing sentiment that the neo-Darwinian paradigm is incomplete, that something more than genetic structure, mutation, genetic drift, and the action of natural selection is required to explain organismal behavior. In this paper we extend the view of organisms as complex self-organizing entities by arguing that basic physical laws, coupled with the acquisitive nature of organisms, makes adaptation all but tautological. That is, much adaptation is an unavoidable emergent property of organisms' complexity and, to some a significant degree, occurs quite independently of genomic changes wrought by natural selection. For reasons that will become obvious, we refer to this assertion as the attractor hypothesis. The arguments also clarify the concept of "adaptation." Adaptation across generations, by natural selection, equates to the (game theoretic) maximization of fitness (the success with which one individual produces more individuals), while self-organizing based adaptation, within generations, equates to energetic efficiency and the matching of intake and biosynthesis to need. Finally, we discuss implications of the attractor hypothesis for a wide variety of genetical and physiological phenomena, including genetic architecture, directed mutation, genetic imprinting, paramutation, hormesis, plasticity, optimality theory, genotype-phenotype linkage and puncuated equilibrium, and present suggestions for tests of the hypothesis. (c) 1998 American Institute of Physics.

Journal Article↗

Do deleterious mutations act synergistically? Metabolic control theory provides a partial answer.

Metabolic control theory is used to derive conditions under which two deleterious mutations affecting the dynamics of a metabolic pathway act synergistically. It is found that two mutations tend to act mostly synergistically when they reduce the activity of the same enzyme. If the two mutations affect different enzymes, the conclusion depends on the way that fitness is determined by aspects of the pathway. The cases analyzed are: selection for (1) maximal flux, (2) maximal equilibrium concentration (pool size) of an intermediate, (3) optimal flux, (4) optimal pool size. The respective types of epistasis found are: (1) antagonistic, (2) partly synergistic, (3-4) synergism is likely to predominate over antagonism. This results in somewhat different predictions concerning the effect of metabolic mutations on fitness in prokaryotes and eukaryotes. The fact that bacteria are largely clonal but have often a mosaic gene structure is consistent with expectations from the model.

Enzymes↗

The anomalous effects of biased mutation.

A model is presented in which alleles at a number of loci combine to influence the value of a quantitative trait that is subject to stabilizing selection. Mutations can occur to alleles at the loci under consideration. Some of these mutations will tend to increase the value of the trait, while others will tend to decrease it. In contrast to most previous models, we allow the mean effect of mutations to be nonzero. This means that, on average, mutations can have a bias, such that they tend to either increase or decrease the value of the trait. We find, unsurprisingly, that biased mutation moves the equilibrium mean value of the quantitative trait in the direction of the bias. What is more surprising is the behavior of the deviation of the equilibrium mean value of the trait from its optimal value. This has a nonmonotonic dependence on the degree of bias, so that increasing the degree of bias can actually bring the mean phenotype closer to the optimal phenotype. Furthermore, there is a definite maximum to the extent to which biased mutation can cause a difference between the mean phenotype and the optimum. For plausible parameter values, this maximum-possible difference is small. Typically, quantitative-genetics models assume an unconstrained model of mutation, where the expected difference in effect between a parental allele and a mutant allele is independent of the current state of the parental allele. Our results show that models of this sort can easily lead to biologically implausible consequences when mutations are biased. In particular, unconstrained mutation typically leads to a continual increase or decrease in the mean allelic effects at all trait-controlling loci. Thus at each of these loci, the mean allelic effect eventually becomes extreme. This suggests that some of the models of mutation most commonly used in quantitative genetics should be modified so as to introduce genetic constraints.

Alleles↗

The role of lumbar spinal elements in flexion.

The forces induced in the disc and ligaments of a lumbar motion segment in resisting a quasi-static external load, using a semi-experimental approach, are presented. The lines of action of ligaments (direction cosines) and disc center for the initial position of the specimen were determined using a morphometer. The changes in these lines of action for a known external load were computed by using the three-dimensional load-deformation characteristics of an intact motion segment. The load-deformation behavior were obtained by applying a known load to the motion segment's superior vertebra and recording the motion produced. A seven dial gauge motion measuring system was used for this purpose. The six equations of equilibrium yielded a statically indeterminate model. A linear optimization technique in conjunction with a cost function enabled the computation of forces in the ligaments as well as forces and moments in the disc. This approach made it possible to determine the component forces without a priori knowledge of the structural properties of ligaments. Typically for an external flexion moment of 6.9 Nm the supraspinous ligament experienced the most force (60 N), followed by capsular ligaments (25 N), and transverse ligaments (15 N). A compressive force of 100 N within the disc was predicted. The load-deformation curve, obtained from this study, for the supraspinous ligament was nonlinear and is in agreement with published experimental results.

Aged↗

Postural control in children with spastic diplegia: muscle activity during perturbations in sitting.

To clarify the neural mechanisms controlling equilibrium during sitting, and the implications for the optimal sitting position for children with CP, automatic postural adjustments after perturbations of the support surface during sitting were investigated in seven children with spastic diplegia and in seven age-matched controls. A sudden backward sway of the body evoked brisk responses in ¿ventral' muscles in both groups. However, the order of muscle recruitment, which in most non-disabled children was caudal, was reversed in the children with diplegia, whose first response was in the neck flexors. The children with diplegia also co-activated antagonistic neck and hip muscles. The authors concluded that although children with spastic diplegia may produce a basic muscle activation pattern (first level of the central pattern generator, CPG), they cannot adjust the pattern in response to external changes (second level of the CPG).

Cerebral Palsy↗

Kinetic characterization of [125I] iodo-prolactin in binding to primary monolayer cultures of rabbit mammary epithelium.

Monocellular suspensions of epithelial cells from mammary glands of rabbits at 20-22 days of pregnancy were prepared by sequential dissociation with collagenase-hyaluronidase followed by Pronase. Maintenance in D-valine-substituted minimum essential medium (D-valine-MEM) supplemented with 10% dialyzed calf serum yielded monolayers enriched for rabbit mammary epithelial cells (RMEC). RMEC specifically and reversibly bound bovine PRL with Ka = 1.41-1.85 x 10(9)M-1. Association of lactogen with RMEC receptor followed bimolecular reaction kinetics with rate of 5.17 (+/- 0.75) x 10(5)M-1 sec-1 at 24 C, and 1.03 (+/- 0.11) x 10(6)M-1 sec-1 at 37 C. Dissociation was first order (K-1 = 5.97 (+/- 0.70) x 10(-5) sec-1) and was unaffected by the presence of lactogen. Specific binding determined with an excess of unlabelled bPRL was 66-77% of the total binding, and was optimal at pH 7.4. The binding reaction reached equilibrium in 2 h at 37 C, in 3 h at 24 C, and after 24 h at 4 C. Studies of binding capacity revealed the presence of 4.6-6.3 x 10(3) sites per cell, competition for which was limited to hormones demonstrating lactogenic activity. Recovered lactogen was not degraded by incubation with or dissociation from RMEC. Approximately 25% of the radioactivity remained associated with the cells even upon prolonged incubation. These studies demonstrated several advantages of RMEC for the investigation of hormone-receptor interaction and receptor regulation.

Animals↗

The saturable high affinity association of factor X to ADP-stimulated monocytes defines a novel function of the Mac-1 receptor.

Initiation of the coagulation protease cascade as it assembles on cell surfaces requires limited proteolytic activation of the zymogen factor X. Not previously suspected to be the ligand of an organizing receptor on cell surfaces, we now describe that factor X specifically associates with cells of monocyte lineage and we identify the high affinity receptor for this zymogen. Following stimulation with ADP (10 microM), or with the ionophore ionomycin (1 microM), isolated human monocytes bind 125I-factor X in a saturable fashion with a dissociation constant (Kd) of 21.8-44.9 nM. Equilibrium binding analyses indicate that the reaction is optimal at room temperature, requires Ca2+ ions, and saturates at 128,500 +/- 21,300 molecules of 125I-factor X specifically associated with the cell surface. Molar excess of unlabeled factor X inhibits and reverses the binding, whereas the homologous gamma-carboxylated coagulation proteins factors II, VII, IX, IXa, and Xa are without effect. Similarly, chelation of divalent ions immediately dissociates bound 125I-factor X. The monoblast cell line U 937 and the monocytic cell line THP-1 when stimulated with ADP or ionomycin, bind 125I-factor X with characteristics similar to monocytes. Receptor identity was explored using antibodies to the leukocyte adhesive receptors Mac-1, LFA-1, and p150.95. Monoclonal antibodies specific for the alpha subunit of Mac-1 (M 1/70, LM 2/1) or for the common beta subunit (TS 1/18, 60.3) bound equally to resting and ADP- or ionomycin-stimulated cells and also completely blocked the binding of 125I-factor X to stimulated monocytes, U 937, or THP-1 cells. To distinguish between modulatory effects of the monoclonal antibodies and direct spatial hindrance binding of 125I-factor X to Mac-1 was analyzed directly. OKM10 anti-alpha subunit of Mac-1 monoclonal antibody immunoprecipitated 125I-factor X chemically cross-linked to its receptor on stimulated cells. In addition, the complement protein fragment C3bi, which is a recognized ligand for Mac-1, competitively inhibited the association of 125I-factor X. These findings indicate that human blood monocytes and less differentiated cells of this lineage possess an inducible receptor specific for factor X; and also support the conclusion that the heterodimeric leukocyte adhesive receptor Mac-1 functions as the specific receptor structure. We suggest that the novel properties of this receptor may be of importance in the organization and regulation of certain coagulation protease cascades on the monocyte surface.

Adenosine Diphosphate↗

Coordination between equilibrium and hand trajectories during whole body pointing movements.

We examined the coordination between equilibrium and voluntary pointing movements executed from the standing position, using the whole body. It has previously been shown that trunk movement has little effect upon kinematic characteristics of hand pointing when movements are executed in the sitting position. The present study asked if elements of hand trajectory are modified by requirements of large trunk displacements and fine equilibrium control when pointing movements are executed from the standing position. To achieve this, center of pressure (CoP) and center of mass (CoM) displacements were analyzed along with the kinematics of the pointing hand. Results showed that the CoM was not stabilized (it displaced between 23% and 61+/-21% of the foot's length), confirming that instead of a compensation of mechanical perturbations due to arm and trunk movements, the present equilibrium strategy consisted of controlling CoM acceleration towards the target. Hand paths were curved and were not distance or speed invariant. Rather than simple inefficiencies in programming or execution, path curvature suggested that different hand movement strategies were chosen as a function of equilibrium constraints. In light of these results, we hypothesize that postural stability may play a role in the generation of hand trajectory for complex, whole-body pointing movements, in addition to constraints placed upon end-effector kinematics or the dynamic optimization of upper-limb movements. A dependent regulation of equilibrium and spatial components of the movement is proposed.

Acoustic Stimulation↗

A noisy self-organizing neural network with bifurcation dynamics for combinatorial optimization.

The self-organizing neural network (SONN) for solving general "0-1" combinatorial optimization problems (COPs) is studied in this paper, with the aim of overcoming existing limitations in convergence and solution quality. This is achieved by incorporating two main features: an efficient weight normalization process exhibiting bifurcation dynamics, and neurons with additive noise. The SONN is studied both theoretically and experimentally by using the N-queen problem as an example to demonstrate and explain the dependence of optimization performance on annealing schedules and other system parameters. An equilibrium model of the SONN with neuronal weight normalization is derived, which explains observed bands of high feasibility in the normalization parameter space in terms of bifurcation dynamics of the normalization process, and provides insights into the roles of different parameters in the optimization process. Under certain conditions, this dynamical systems view of the SONN reveals cascades of period-doubling bifurcations to chaos occurring in multidimensional space with the annealing temperature as the bifurcation parameter. A strange attractor in the two-dimensional (2-D) case is also presented. Furthermore, by adding random noise to the cost potentials of the network nodes, it is demonstrated that unwanted oscillations between symmetrical and "greedy" nodes can be sufficiently reduced, resulting in higher solution quality and feasibility.

Electricity↗

Desiccation tolerance of recalcitrant Theobroma cacao embryonic axes: the optimal drying rate and its physiological basis.

Recalcitrant seed axes were reported to survive to lower water contents under fast-drying conditions. The present study was to examine the hypothesis that drying rate and dehydration duration could interact to determine desiccation tolerance through different physico-chemical mechanisms. The effect of drying rate on desiccation tolerance of Theobroma cacao seed axes at 16 degrees C was examined. Rapid-drying at low relative humidity (RH) and slow-drying at high RH were more harmful to cocoa axes, because electrolyte leakage began to increase and axis viability began to decrease at high water contents. Maximum desiccation tolerance was observed with intermediate drying rates at RH between 88% and 91%, indicating the existence of an optimal drying rate or optimal desiccation duration. This maximum level of desiccation tolerance for cocoa axes (corresponding to a critical water potential of -9 MPa) was also detected using the equilibration method, in which axes were dehydrated over a series of salt solutions or glycerol solutions until the equilibrium. These data confirmed that the physiological basis of the optimal drying rate is related to both mechanical stress during desiccation and the length of desiccation duration during which deleterious reactions may occur. The optimal drying rate represents a situation where combined damages from mechanical and metabolic stresses become minimal.

Adaptation, Physiological↗

Perfection of a synaptic receptor: kinetics and energetics of the acetylcholine receptor.

The energetics and kinetics of activation of the acetylcholine receptor are evaluated in the context of optimizing rapid synaptic transmission. Physiological needs are used as the basis for estimating optimal values for the closed-to-open channel equilibrium constants of the liganded and unliganded receptor. An estimate is made of the maximum energy that can be derived from the binding of acetylcholine to a perfectly designed receptor binding site. Application of the principle of detailed balance shows that with only one ligand binding site the receptor will not be able to derive enough energy from acetylcholine binding to drive a sufficiently large change in the channel conformational equilibrium. This then provides a rationale for the existence of a second binding site, rather than the often invoked advantage of cooperativity. With two binding sites there is a considerable excess of binding energy and consequently considerable flexibility in how binding energy can be utilized. It is shown that the receptor must have at least one binding site that binds acetylcholine weakly when the channel is closed. This is essential to rapid response termination. However, making the other binding site bind more tightly can enhance and accelerate the activation of the receptor. To optimize both response activation and termination the best solution is to make the two binding sites different in their binding affinities. This qualitatively reproduces an experimental observation.

Calorimetry↗

Context-dependent reflex control: some insights into the role of balance.

Recent research suggests that the balance requirements of a task dictate the reflexive response. However, these observations were inferred indirectly from either different tasks or different phases of the same task. This study directly tested the hypothesis of balance-dependent control during recovery from an unexpected trip. The subjects were tripped in two different support conditions: unilimb support (provided by the stance limb) or trilimb support (provided by the stance limb and both arms placed on adjacent parallel bars). The subjects exhibited anticipatory changes: they biased the body center of mass toward the support limb in the mediolateral direction and elevated the swing limb higher when there was a possibility of being tripped. The electromyographic (EMG) latencies were not influenced by the threat to equilibrium. The magnitudes of the EMG reflexive response to the trip were clearly modulated as a function of the threat to stability, not in a simple manner, but rather in a complex manner, which optimized the recovery strategy. It is evident that the overriding concern, equilibrium control during locomotion, has a dominant influence on reflex modulation.

Adaptation, Physiological↗

Inverse analyses of transport of chlorinated hydrocarbons subject to sequential transformation reactions.

Chemical and biological transformations can significantly affect contaminant transport in the subsurface. To better understand such transformation reactions, an equilibrium-nonequilibrium sorption transport model, HYDRUS-1D, was modified by including inverse solutions for multiple breakthrough curves resulting from the transport of solutes undergoing sequential transformations. The inverse solutions were applied to miscible-displacement experiments involving dissolved concentrations of trichloroethylene (TCE) undergoing reduction and/or transformations in the presence of zero-valent metal porous media (i.e., iron or copper-coated iron filings) to produce ethylene. The inverse model solutions provided a reasonable description of the transport and transformation processes. Simultaneous fitting of multiple breakthrough curves of TCE and ethylene placed additional constraints on the inverse solution and improved the reliability of parameter estimates. Confidence intervals of optimized parameters were reduced significantly in comparison with those obtained by fitting TCE breakthrough curves independently. Further evidence for accurate parameter estimates was given when the parameter values agreed with previously reported values from independent batch and degradation experiments. Optimized values of the normalized degradation rates for the equilibrium (1.4 x 10(-4) to 7.2 x 10(-5) L h(-1)m(-2)) and nonequilibrium (1.2 x 10(-4) to 5.5 x 10(-5)L h(-1)m(-2)) models compared well with values (0.03 to 6.5 x 10(-5) L h(-1) m(-2)) obtained from previous studies. The estimated TCE-iron sorption coefficients (0.52 to 2.85 L kg(-1)) were also consistent with a previously reported value (1.47 L kg(-1)).

Biotransformation↗

Optimal harvesting and stability for a two-species competitive system with stage structure.

In this paper, we consider a stage-structured competitive population model with two life stages, immature and mature, with a mature population of harvesting. We obtain conditions for the existence of a globally asymptotically stable positive equilibrium and a threshold of harvesting for the mature population. The optimal harvesting of the mature population is also considered.

Animals↗

Isobaric vapor-liquid equilibrium for methyldichlorosilane-dimethyldichlorosilane-benzene system.

The elucidation of vapor-liquid equilibrium (VLE) of the halogenated silane was necessary for the production of silicon derivatives, especially for methylvinyldichlorosilane, due to the lack of the relevant reports. Isobaric VLE for the system methyldichlorosilane-dimethyldichlorosilane-benzene and isobaric VLE of the three binary systems were measured with a new pump-ebulliometer at the pressure of 101.325 kPa. These binary compositions of the equilibrium vapor were calculated according to the Q function of molar excess Gibbs energy by the indirect method and the resulted VLE data agreed well with the thermodynamic consistency. Moreover, the experimental data were correlated with the Wilson, NRTL, Margules and van Laar equations by means of the least-squares fit, the acquired optimal interaction parameters were fitted to experimental vapor-liquid equilibrium data for binary systems. The binary parameters of Wilson equation were also used to calculate the bubble point temperature and the vapor phase composition for the ternary mixtures without any additional adjustment. The predicted vapor-liquid equilibrium for the ternary system was in a good agreement with the experimental results. The VLE of binary and multilateral systems provided essential theory for the production of the halogenated silane.

Journal Article↗