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Accelerating MRI by skipped phase encoding and edge deghosting (SPEED).

A fast imaging method called skipped phase encoding and edge deghosting (SPEED) is introduced. The k-space is sparsely sampled into three interleaved datasets, each with a skip-size N and a relative shift in phase encoding (PE). These datasets are separately reconstructed by 2DFT and edge-enhanced by a differential filter in the PE direction, resulting in edge maps with phase-shifted aliasing ghosts. The sparseness of edges reduces the chance of ghost overlapping. Typical ghosted-edge maps can be adequately modeled with only two dominating ghost layers that are resolved from a set of three equations using least-square error minimization, yielding N ghost maps of different orders that can be registered and averaged into a single deghosted-edge map for noise and artifact reduction. Finally, the deghosted-edge map is transformed into a deghosted image by an inverse filter. A few central k-space lines are collected without PE skip to aid the inverse filtering. SPEED has been demonstrated by in vivo data to reduce scan time considerably without noticeable artifacts. It has various potential applications, such as MR angiography (MRA), where the signal itself is sparse. As an independent method, SPEED can be combined with other fast imaging methods for further acceleration.

Algorithms↗

Acute injections of brain-derived neurotrophic factor in a vocal premotor nucleus reversibly disrupt adult birdsong stability and trigger syllable deletion.

Behavioral variability serves an essential role in motor learning by enabling sensory feedback to select those motor patterns that minimize error. Birds use auditory feedback to learn how to sing, and their songs lose variability and become highly stereotyped, or crystallized, at the end of a sensitive period for sensorimotor learning. The molecular cues that regulate song variability are not well understood. In other systems, neurotrophins, and brain-derived neurotrophic factor (BDNF) in particular, can mediate various forms of neural plasticity, including sensitive period neural circuit plasticity and activity-dependent synapse formation, and may also influence learning and memory. Here, we have tested the hypothesis that neurotrophin expression in the robust nucleus of the arcopallium (RA), the telencephalic output controlling song, regulates song variability. BDNF and its receptor trkB are expressed in RA, and BDNF expression in RA appears to be highest in juveniles, when song is most variable and plastic, and synapse density highest. Thus, song variability and synaptic connectivity could be enhanced by augmented expression of BDNF in RA. In support of this idea, we found that BDNF injections into the adult RA induced the re-expression of juvenile-like phenotypes, including song variability and an increased synaptic density in RA. Furthermore, BDNF treatment also induced vocal plasticity, characterized by syllable deletions and persistent changes to the song patterns. These results suggest that endogenous BDNF could be a molecular regulator of the song variability essential to vocal plasticity and, ultimately, to song learning.

Animals↗

Should TGV be measured from end-inspiratory occlusions rather than end-expiratory occlusions in wheezy infants?

It has been suggested that thoracic gas volume (TGV) measured in infants in a plethysmograph most accurately represents true lung volume when calculated from end-inspiratory airway occlusions. The rationale proposed is that pressure measured at the mouth underestimates alveolar pressure more at end-expiration than at end-inspiration, presumably due to small airway closure, and this results in greater overestimation of TGV. To investigate this possibility we calculated TGV in 40 wheezy infants from occlusions at both end-inspiration (TGVei) and end-expiration (TGVee) using a 60 L whole body plethysmograph. TGV was corrected for equipment dead space and tidal volume. When a significant change in TGV was defined as lying outside the 95% confidence interval of the TGVee measurements, 8 of the 40 infants tested had significantly higher TGV values measured from occlusions made at end-expiration, while two infants had significantly lower TGV values measured from occlusions made at end-expiration. This trend was not more common in infants with "concave" flow-volume curves. Although it is technically easier to make occlusions at end-expiration, occluding at end-inspiration may minimize errors of TGV measures in a few individuals due to small airway closure at low lung volumes.

Bronchiolitis, Viral↗

Compensation voltage shifting in high-field asymmetric waveform ion mobility spectrometry-mass spectrometry.

The separation and ion focusing properties of High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) depend on desolvated ions entering the device, leading to a compound-specific, reproducible compensation voltage (CV) for each ion. This study shows that the conditions identified for stable spray and satisfactory ion desolvation in normal electrospray ionization mass spectrometry (ESI-MS) operation might significantly differ from those required for FAIMS-MS. In a typical setup with high-flow electrospray conditions, ions could be incompletely desolvated, resulting in the formation of unidentified clusters with differing behavior in a FAIMS environment. This causes compound-specific shifts of as much as 10 V in CV values when the mobile phase composition and/or flow rate are varied. The shifts diminish and finally disappear when the flow rate of methanol, used as mobile phase, is reduced to 40 microL/min and that of acetonitrile to 20 microL/min. The reproducibility of the observed CV was determined by scanning the CV while infusing a five-component mixture into a 400 microL/min flow of methanol or 50:50 acetonitrile/water. The relative standard deviation (RSD) for these multiple scans ranged from 0.7% to 6%. Therefore, under a constant set of experimental parameters, the CV does not shift appreciably. These observations have an impact on method development strategies. High flow rates can be used with the FAIMS device, since the CV values are reproducible, but it is likely that clusters are forming. Therefore, CV scans should be performed under conditions which mimic the chromatographic elution or flow injection analysis conditions, including matrix composition, to minimize errors in CV determination. An alternative approach is to determine the liquid flow rate at which the CV becomes compound-specific and to split the mobile phase stream accordingly. These experimental results may be specific to the setup used for this study and may not be directly applicable to other instrument FAIMS devices.

Journal Article↗

Assay of malondialdehyde in biological fluids by gas chromatography-mass spectrometry.

Malondialdehyde (MDA) is assayed in femtomole quantities in biological samples by gas chromatography-mass spectrometry (GC-MS). The MDA trapped in protein as a Schiff base is released by H2SO4, the protein precipitated using Na2WO4, and the MDA derivatized with pentafluorophenylhydrazine to form the stable adduct, N-pentafluorophenylpyrazole. Negative chemical ionization (NCI) capability allows the sensitive detection of this MDA adduct in biological samples at a level of 5 nM on-column. A stable-isotope-labeled MDA, [2H2]MDA, was used as an internal standard for quantitation. MDA recovery from plasma was 76%. This assay provides two forms of confirmation of the analyte, retention time and mass ion, thus minimizing error due to interfering compounds. The commonly used thiobarbituric acid assay for MDA overestimates the MDA levels by over 10-fold, possibly resulting from cross-reactivity with other aldehydes and artifactual oxidation due to 100 degrees C temperature conditions. In our assay, all steps were performed at room temperature thereby suppressing artifactual oxidation of the sample. We have successfully applied this assay to biological samples including plasma, tissue homogenates, and sperm.

Animals↗

The wall and multivalent counterion effects on the electrostatic force between like-charged spherical particles confined in a charged pore.

The effect of wall confinement (wall charge and wall-sphere separation distance) on the electrostatic force between two charged spheres confined in a long charged pore in symmetric and asymmetric electrolytes have been quantified by solving the nonlinear Poisson-Boltzmann equation (PBE), using adaptive finite elements combined with error minimization techniques. The computed force indicated the strong effect of the wall potential on the reduction of the repulsive force for all type of electrolytes. The influence of the wall effect was reduced when the valence of the electrolyte was increased. A significant reduction in the repulsive force between the two spheres was also observed when the distance between the pore wall and the sphere surface was reduced. A smaller long-range repulsive interaction was observed between spheres when the solutions contained multivalent counterions as compared with a monovalent solution. However, at short ranges of separation distances multivalent counterions increase the electrostatic repulsive force between the spheres. The effect of the dimensionless radius of the spheres on the electrostatic force between them has been determined and a significant reduction observed as the dimensionless radius was reduced.

Journal Article↗

Angle measurements of the distal radius: a cadaver study.

The quality of reduction of distal radius fractures is assessed mainly by degree of restoration of radial angle and palmar tilt. This cadaver study investigates the effects of forearm rotation of these measurements. A 5 degree rotational change produces a 1.6 degree change in palmar tilt on the conventional lateral view and a 1.0 degree change on the 15 degree lateral view. Lateral radiographs could be rotated 15 degrees-30 degrees and still be considered acceptable. Therefore, rotation may produce up to a 4.0 degree (15 degrees lateral view) or 6.4 degree (conventional lateral view) change in measured palmar tilt. To provide clearer measuring landmarks and minimize error due to rotation, we recommend obtaining the 15 degree lateral view routinely in fractures with significant dorsal angulation. We also studied the interobserver variability of different surgeons assessing radial angle and palmar tilt. The mean standard deviation between surgeons was 3.2 degrees for radial angle, 3.6 degrees for conventional lateral palmar tilt, and 2.1 degrees for 15 degrees lateral palmar tilt.

Forearm↗

Simulation of mechanical respiration using a multicompartment model for ventilation mechanics and gas exchange.

The mechanical respiration of intubated patients is a process which is influenced by many parameters and, through its many interactions, is extremely complex. Taken by itself the logical analysis of this complexity is extraordinarily difficult and leads very often to false conclusions. For that reason computer simulation of complex systems by means of the computer is an important tool in the analysis of these processes. Required is a model which describes the actual behavior of the system. However, it should not be overlooked that a model always describes only a portion of reality. Models having exclusively to do with ventilation mechanics or with gas exchange cannot simulate the interactions between the two. To accomplish this purpose, an improved model is necessary, including both partial processes and thereby capturing the complexity of the system. Accordingly, both ventilation mechanics and gas exchange have been integrated equally into the newly developed model for the simulation program Simu Vent. The core of the program builds a functional multicompartment model of the lungs and considers the partial processes ventilation mechanics, gas transport, gas mixing and gas exchange. Further considered are the respirator, blood circulation and peripheral compartments. The program runs under a graphical user interface, allowing its easy use. Responsible for this ease is the user's ability to interact with the program while simulation is in progress and the specially designed graphic screen mask. Comparing measured with simulated values demonstrated that the measured curve can be simulated with minimal error. Furthermore, the multicompartment model describes disruptions in distribution. Simu Vent's application is especially well advised in the description and analysis of the theoretical fundamentals of mechanical respiration. This aspect is meaningful above all in education and research, rendering these two the model's main areas of use.

Computer Simulation↗

The role of the pathologist in diagnosis and surgical decision making in hyperparathyroidism.

Hyperparathyroidism has been diagnosed with increasing frequency in recent decades. The concomitant awareness that the disease may be the cause of a concealed morbidity and even an increased mortality has resulted in more liberal indications for surgery. Many patients currently undergo surgery on the grounds of only mild hypercalcemia and in the absence of any apparent clinical symptoms. This policy of early surgical treatment has emphasized the importance of a histopathological parathyroid diagnosis, since many of these patients exhibit chief cell hyperplasia and minimal glandular enlargement. Light microscopic examination of frozen sections stained with hematoxylin-eosin and with stains for demonstration of cytoplasmic fat in the parathyroid chief cells, and appropriate weight estimates of the parathyroid glands, constitute the conventional, intra-operative basis for the diagnosis. The use of specific antiparathyroid antibodies is an important new tool in the histopathological parathyroid examination, mainly because of the ability to demonstrate the cause of increased parathyroid hormone release from the pathological parathyroid tissue. A careful histopathological examination in combination with gross inspection of the parathyroid glands by an experienced eye should contribute to adequate surgical treatment and minimize errors in operative management in patients with hyperparathyroidism.

Adenoma↗

Sodium currents in the giant axon of the crab Carcinus maenas.

Measurements were made of the kinetics and steady-state properties of the sodium conductance changes in the giant axon of the crab Carcinus maenas. The conductance measurements were made in the presence of small concentrations of tetrodotoxin and as much electrical compensation as possible in order to minimize errors caused by the series resistance. After an initial delay of 10-150 microsec, the conductance increase during depolarizing voltage clamp pulses followed the Hodgkin-Huxley kinetics. Values of the time constant for the activation of the sodium conductance lay on a bell-shaped curve with a maximum under 180 microsec at -40 mV (at 18 degrees C). Values of the time constant for the inactivation of the sodium conductance were also fitted using a bell-shaped curve with a maximum under 7 msec at -70 mV. The effects of membrane potential on the fraction of Na channels available for activation studied using double pulse protocols suggest that hyperpolarizing potentials more negative than -100 mV lock a fraction of the Na channels in a closed conformation.

Animals↗

Systematic management and analysis of fatty acid data from multiple tissue samples.

A systematic approach has been developed for the collection and analysis of gas chromatographic (GC) data from multiple fatty acid profiles. The approach was applied to a series of polar and nonpolar tissue lipids generated in animal feeding studies to allow a comparison of mean fatty acid profiles as a function of either dietary regimen or tissue location. The magnitude of the studies, sufficiently large to minimize error from animal variabilities, mandated the use of computer assistance. Nevertheless, manual input was essential due to the complexity of the GC patterns, and was invoked for peak assignment and report editing. The approach discussed here allowed for the consolidation and statistical analysis of data from over 30,000 GC peaks, and generated results in both tabular and graphic formats. It should be extendable to other chromatographic studies of lipid components.

Adipose Tissue↗

Calcium phosphate saturation levels in ultrafiltered serum.

Calcifications occurring in arteriosclerotic plaque and other pathological deposits are important health concerns, and the nature of these deposits and their mechanisms of formation warrant investigation. Crystals of the relevant calcium phosphates were equilibrated with the undiluted ultrafiltered human serum (u.f.s.) at 37 degrees C by constant stirring and periodically removing samples for calcium and phosphate analysis and for pH measurement. The solubility measurements were carried out both with and without a 5.5% CO2 atmosphere, the physiological partial pressure of CO2. The apparent ion activity products of well-crystallized dicalcium phosphate dihydrate (DCPD), octacalcium phosphate (OCP), and hydroxyapatite (OHAp) equilibrated in u.f.s. were calculated from the calcium and phosphate concentrations and pH in each case for comparison with their known solubility products. In this way the well-crystallized calcium phosphates serve as fiducial solubility standards, thereby minimizing errors due to complexing of calcium and phosphate ions by u.f.s. constituents. Under 5.5%, CO2 native u.f.s. was found to be substantially undersaturated with respect to DCPD, slightly supersaturated with respect to OCP, and highly supersaturated with respect to OHAp. The ion activity product of DCPD in DCPD-saturated u.f.s. was 2.4 X 10(-7), and the ion activity product of OCP in OCP-saturated u.f.s. was 4 X 10(-49), slightly above their solubility products (Ksp(DCPD) = 2.3 X 10(-7), Ksp(OCP) = 2.5 X 10(-49). The ion activity products of DCPD and OCP in u.f.s. under CO2 indicate that the concentrations of calcium and phosphate complexing agents (except bicarbonate) are quite low. The u.f.s. remained supersaturated with respect to OHAp even after 2 months of equilibration.(ABSTRACT TRUNCATED AT 250 WORDS)

Calcium↗

A computational framework for cortical learning.

Recent physiological findings have revealed that long-term adaptation of the synaptic strengths between cortical pyramidal neurons depends on the temporal order of presynaptic and postsynaptic spikes, which is called spike-timing-dependent plasticity (STDP) or temporally asymmetric Hebbian (TAH) learning. Here I prove by analytical means that a physiologically plausible variant of STDP adapts synaptic strengths such that the presynaptic spikes predict the postsynaptic spikes with minimal error. This prediction error model of STDP implies a mechanism for cortical memory: cortical tissue learns temporal spike patterns if these spike patterns are repeatedly elicited in a set of pyramidal neurons. The trained network finishes these patterns if their beginnings are presented, thereby recalling the memory. Implementations of the proposed algorithms may be useful for applications in voice recognition and computer vision.

Action Potentials↗

Correlation between codon usage and thermostability.

Variations of arginine codon usage between organisms may have important implications to thermostability. The preferential usage of AGR codons for arginine in thermophiles and hyperthermophiles implies positive error minimization, contributing to avoid mutations that could harm protein thermostability. This bias is not a mere consequence of increased G + C content, as it has been previously suggested, and may represent a new mechanism of adaptation to protein thermostability.

Arginine↗

[Root growth after wisdom tooth transposition. Case documentation with proposal for a radiologic method to quantify growth].

OBJECTIVES: To introduce a method for assessment of root growth on panoramic radiographs exemplified by a case report on an autotransplanted lower third molar. MATERIAL AND METHODS: A lower left third molar (T) with incomplete root formation was transplanted for replacement of the lower left first molar in an 18-year-old woman. T was monitored clinically and, together with its neighboring lower second molar (37) with constant root length, also radiographically by means of two panoramic radiographs (OPGs) produced 12 days and 20 months postoperatively. A method for calculation of the root length as a multiple of the crown length is introduced, using accurately reproducible landmarks defining the coronal and apical endpoints of the examined tooth in all OPGs of the series. This method minimizes error due to different magnifications within the set of radiographs. RESULTS: Using the method introduced, the root length of the constant tooth 37 varied at 2.7% within the set of OPGs, whereas it revealed a 5.6% variation when the evaluation was based on direct measurement. Based on the described method, T revealed a postoperative root growth of approximately one-third of its final length and showed clinically no pathological findings during the observation period. CONCLUSIONS: Our results indicate that with the described method root growth assessment on panoramic radiographs is more accurate than with direct measurement.

Adolescent↗

Passive stiffness of Drosophila IFM myofibrils: a novel, high accuracy measurement method.

As the smallest muscle-cell substructure that retains the intact contractile apparatus, the single myofibril is considered the optimal specimen for muscle mechanics, although its small size also poses some technical difficulties. Myofibrils from Drosophila indirect flight muscle (IFM) are particularly difficult to study because their high passive stiffness makes them hard to handle, and too resistant to stretch to produce enough elongation for the accurate measurement of sarcomere length change. In this study, we devised a novel method for accurate stiffness measurement of single relaxed myofibrils using microfabricated cantilevers and phase contrast microscopy. A special experimental protocol was developed to minimize errors, and some data analysis strategies were used to identify and exclude spurious data. Remarkably consistent results were obtained from Drosophila IFM myofibrils. This novel, high accuracy method is potentially an effective tool for detecting small passive stiffness change in muscle mutants.

Animals↗

Occurrence and significance of echocardiographically demonstrated tricuspid valve prolapse.

Echocardiograms from 562 patients were examined for evidence of the pattern of tricuspid valve prolapse. Criteria for the diagnosis can be established similar to those applicable to mitral prolapse. In 500 consecutive patients without mitral valve prolapse, there were no cases of isolated tricuspid valve prolapse. Eleven of 53 (21%) patients with mitral valve prolapse also had tricuspid valve prolapse. Four of six (67%) patients with Marfan's syndrome and mitral valve prolapse also had tricuspid valve prolapse. The occurrence of this echocardiographic pattern as an isolated finding as well as associated with mitral valve prolapse was significantly less than previous angiographic reports. Patients with both these findings tended to be older than those with mitral valve prolapse alone, but clinically differed in no other way. Use of standardized technique can minimize errors in diagnosis.

Adolescent↗

Effects of exercise training on left ventricular mass in patients with ischemic heart disease.

To determine whether exercise training results in increased left ventricular mass in patients with ischemic heart disease, we obtained echocardiograms in 14 coronary patients before and after an average of seven months (range 3 to 14 months) of supervised arm and leg exercise. Each echocardiogram was interpreted jointly by two blinded observers, using three different measurement conventions and a semiautomated method of analysis to minimize errors of interpretation. Exercise training led to subjective improvement in all 14 patients, and to an objective increase in functional capacity in 13 of 14 patients, as evidenced by an increase in maximal oxygen consumption estimated from symptom-limited treadmill exercise testing (8.8 +/- 2.7 (SD) and 10.7 +/- 2.5 METS before and after training, respectively, p less than 0.01). However, this functional improvement was not accompanied by any significant change in left ventricular end-diastolic diameter, or posterior wall or interventricular septal thickness. Likewise, left ventricular cross-sectional area (CSA), an index of left ventricular mass which corrects for altered ventricular volume and theoretically reflects directional changes in mass despite nonuniform wall thickness, did not change significantly after training by any measurement convention (CSA = 18.0 +/- 6.5 and 17.6 +/- 6.5 cm2 before and after training, respectively, by American Society of Echocardiography measurements). These data strongly suggest that improved functional capacity after exercise training in patients with ischemic heart disease is not due to exercise-induced left ventricular hypertrophy.

Adult↗