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Results for “Green analytical method”

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At least 199 records · Page 11Linked to original sources

PubMed2001

Membrane-targeted green fluorescent protein reliably and uniquely marks cells through apoptotic death.

BACKGROUND: An understanding of the molecular processes that comprise the program of physiological cell death demands analytical techniques for the assessment of death events on the level of the individual cell, especially among transfectants and within heterogeneous populations. The utility of available transfection markers is limited by the variability of marker retention and discrimination as cells die. For example, soluble green fluorescent protein (GFP) leaks from dying cells and is not useful when fixation is required; conversely, transfected beta-galactosidase can be visualized only after fixation and staining. METHODS: We have tested a GFP variant as a marker for the direct identification and visualization of transfected cells. We have explored the utility of this membrane-targeted GFP, the genetic fusion of the enhanced GFP and the farnesylation sequence of p21(Ras) (EGFP-F), in a variety of cell death assays. RESULTS: EGFP-F is retained reliably in unfixed dying cells, permitting numerous events of the cell death process to be analyzed in real time in marked cells. Moreover, the cell rounding and shrinkage associated with the loss of adhesion during cell death result in a characteristic condensed EGFP-F signal. CONCLUSIONS: EGFP-F serves to identify transfectants consistently, independent of their ultimate fate. Cellular condensation of EGFP-F provides a specific and quantitative measure of physiological cell death.

Apoptosis↗

PubMed2005

Ultrasensitive reporter protein detection in genetically engineered bacteria.

We demonstrate the use of laser-induced fluorescence confocal spectroscopy to measure analyte-stimulated enhanced green fluorescent protein (egfp) synthesis by genetically modified Escherichia coli bioreporter cells. Induction is measured in cell lysates and, since the spectroscopic focal volume is approximately the size of one bioreporter cell, also in individual live bacteria. This is, to our knowledge, the first ever proof-of-concept work utilizing instrumentation with single-molecule detection capability to monitor bioreporter response. Although we use arsenic inducible bioreporters here, the method is extensible to gfp/egfp bioreporters that are responsive to other substances.

Arsenites↗

PubMed1999

Three-color flow cytometry analysis of tricistronic expression of eBFP, eGFP, and eYFP using EMCV-IRES linkages.

BACKGROUND: The ability to quickly analyze and sort double or triple fluorescent reporter constructs using simultaneous analysis provides significant flexibility in the solution of analytical and process-related questions in biotechnology. METHODS: Bicistronic eBFP/eGFP and eBFP/eYFP constructs were made on two mammalian episomal plasmids using an internal ribosomal entry sequence from encephalomyocarditis virus (EMCV-IRES) to link two GFP expressions. Simultaneous two-color flow cytometry (FCM) analysis was accomplished using a dual Argon-laser multi-line configuration set at excitation wavelengths of 360 and 488 nm. Blue fluorescence emission (440 nm) and green fluorescence emission (507 nm) were detected using 405/20 (FL4) and 510/20 (FL1) bandpass filters. Dual eBFP/eYFP and three-color simultaneous analysis of eBFP/eGFP/eYFP was accomplished using the dual-laser configuration but also using a short-pass (525-nm) dichroic mirror and 550/30 bandpass filter configuration to detect yellow fluorescence emission (527 nm) in a third channel (FL2). RESULTS: Human 293 cells transfected with the bicistronic construct of eBFP-IRES-eGFP were easily detected using simultaneous analysis, and the signals were well separated with a mean blue fluorescent intensity (MFI) in the 2nd-log decade (FL4) and green MFI in the 4th-log decade (FL1). Likewise, eBFP-IRES-eYFP transfected cells were as easily detected and also demonstrated very good signal separation. A tricistronic construct of eBFP-IRES-eGFP-IRES-eYFP was also made and transfected into 293 cells. Triple-color fluorescent cells were easily detected using the cytometer configuration for simultaneous analysis. All three signals separated with only moderate compensation required for green and yellow emission spectra. The respective MFI for each of the fluorescent proteins was correlative to what had been observed with the separate bicistronic constructs. CONCLUSIONS: Our results demonstrate that we have developed a novel fluorescent flow cytometry method that can be used as a powerful tool to differentiate and analyze three colors simultaneously from either a dual or a triple cistronic construct which has been transfected into living cells.

Cell Line↗

PubMed1997

The finite-element method for the propagation of light in scattering media: frequency domain case.

A frequency domain light transport model to simulate the transillumination of a scattering object with radio frequency intensity modulated light is presented. The model is based on the diffusion approximation to the radiative transfer equation and uses a finite-element model to allow for complex geometries and an inhomogeneous distribution of absorption and scattering. It calculates the complex photon density within the object and the complex exitance on the boundary of the object. The model is validated against an analytic Green's function model for a circular geometry in the homogeneous case, and its accuracy is investigated for a range of mesh resolutions, optical parameters, and modulation frequencies.

Biophysical Phenomena↗

PubMed2006

Acute bromadiolone intoxication.

A 55-year-old man came to the hospital with a bleeding wound on his tongue. The coating of his tongue was green, and his sputum was red. Because an increased international normalized ratio-value was measured, a blood sample was sent to our laboratory with the suspicion of coumarin intoxication. Liquid chromatography-electrospray ionization-mass spectrometry (LC-ESI-MS) analysis confirmed the poisoning was by bromadiolone, with its maximum serum concentration at 440 microg/L. The analysis of further samples resulted in a calculated elimination half-life of 140 h. The analytical method described was developed for the determination and quantitation of bromadialone using LC-MS. This method is suitable for the simultaneous identification and quantitation of 10 indirect anticoagulants in human serum, which include five superwarfarins (brodifacoum, bromadiolone, difenacoum, difethialone, and flocoumafen) as rodenticides licenced in Germany and five other vitamin K antagonists (acenocoumarol, coumatetralyl, coumachlor, phenprocoumon, and warfarin). The method is based on an acidic (pH 4.2) liquid-liquid extraction followed by LC-ESI-MS analysis. Analytical separation was carried out using an Atlantis C18 column (2.1 x 20 mm, 3 microm). The mobile phase consisted of methanol/0.1% formic acid; the flow rate was 0.6 mL/min, and the time needed for analysis was 5 min. The lower limit of quantitation was 5 microg/L (signal-to-noise > 10).

4-Hydroxycoumarins↗

PubMedDate not supplied

Determination of malachite green and leucomalachite green in a variety of aquacultured products by liquid chromatography with tandem mass spectrometry detection.

A liquid chromatography/tandem mass spectrometry (LC/MS/MS) method was developed for determining the residues of malachite green (MG) and leucomalachite green (LMG) in a number of aquatic species. MG and its metabolite were extracted from homogenized tissues with a perchloric acid-acetonitrile solution; the extract was centrifuged; and an aliquot was taken, concentrated, and passed through a chemically bonded octadecyl C18 solid-phase extraction column. The compounds of interest were eluted with acetonitrile, and the eluate was evaporated to dryness. The residue was dissolved in acetonitrile and diluted with water in preparation for analysis by LC/MS/MS. MG and its metabolite were determined by reversed-phase LC using a Luna C18 column with an ammonium hydroxide-formic acid buffer in acetonitrile gradient and MS/MS detection using multiple reaction monitoring. Calibration curves were linear for all analyses between 5 and 500 pg injected for both analytes, with recoveries ranging from 81% for LMG to 98% for MG in salmon spiked at the 1 ng/g level. Detection limits of 0.1 ng/g for both MG and LMG were easily obtainable using the recommended method. The operational errors, interferences, and recoveries for spiked samples compared favorably with those obtained by established methodology. The recommended method is simple, rapid, and specific for monitoring residues of MG and LMG in a number of aquatic species.

Acetonitriles↗

PubMed2004

Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.

Existing protein tagging and detection methods are powerful but have drawbacks. Split protein tags can perturb protein solubility or may not work in living cells. Green fluorescent protein (GFP) fusions can misfold or exhibit altered processing. Fluorogenic biarsenical FLaSH or ReASH substrates overcome many of these limitations but require a polycysteine tag motif, a reducing environment and cell transfection or permeabilization. An ideal protein tag would be genetically encoded, would work both in vivo and in vitro, would provide a sensitive analytical signal and would not require external chemical reagents or substrates. One way to accomplish this might be with a split GFP, but the GFP fragments reported thus far are large and fold poorly, require chemical ligation or fused interacting partners to force their association, or require coexpression or co-refolding to produce detectable folded and fluorescent GFP. We have engineered soluble, self-associating fragments of GFP that can be used to tag and detect either soluble or insoluble proteins in living cells or cell lysates. The split GFP system is simple and does not change fusion protein solubility.

Amino Acid Motifs↗

PubMed1999

Glowing jellyfish, luminescence and a molecule called coelenterazine.

Luminescence has assumed an important role in analytical biochemistry and molecular biology as an extremely sensitive method for determining the concentration of specific ions and molecules. The luminescent system of the jellyfish Aequorea victoria consists of the photoprotein aequorin, which contains the molecule coelenterazine as a prosthetic group and shows considerable potential in this area.

Aequorin↗

PubMed2006

Mercury analysis of acid- and alkaline-reduced biological samples: identification of meta-cinnabar as the major biotransformed compound in algae.

The biotransformation of Hg(II) in pH-controlled and aerated algal cultures was investigated. Previous researchers have observed losses in Hg detection in vitro with the addition of cysteine under acid reduction conditions in the presence of SnCl2. They proposed that this was the effect of Hg-thiol complexing. The present study found that cysteine-Hg, protein and nonprotein thiol chelates, and nucleoside chelates of Hg were all fully detectable under acid reduction conditions without previous digestion. Furthermore, organic (R-Hg) mercury compounds could not be detected under either the acid or alkaline reduction conditions, and only beta-HgS was detected under alkaline and not under acid SnCl2 reduction conditions. The blue-green alga Limnothrix planctonica biotransformed the bulk of Hg(II) applied as HgCl2 into a form with the analytical properties of beta-HgS. Similar results were obtained for the eukaryotic alga Selenastrum minutum. No evidence for the synthesis of organomercurials such as CH3Hg+ was obtained from analysis of either airstream or biomass samples under the aerobic conditions of the study. An analytical procedure that involved both acid and alkaline reduction was developed. It provides the first selective method for the determination of beta-HgS in biological samples. Under aerobic conditions, Hg(II) is biotransformed mainly into beta-HgS (meta-cinnabar), and this occurs in both prokaryotic and eukaryotic algae. This has important implications with respect to identification of mercury species and cycling in aquatic habitats.

Chlorophyta↗

PubMed1998

[A new microprocedure for continuous and non-consuming determination of cellular oxygen uptake based on fluorescence quenching].

The oxygen uptake in a cell suspension can be measured by various methods using manometric, paramagnetic or photometric techniques, oximetry, mass spectrometry or radiospectrometry. Easy-to-apply Clark-type electrochemical (polarographic) sensors are by far the most commonly used devices in medical applications. One of their drawbacks is the fact that they consume oxygen and may cause systematic errors when measuring oxygen uptake. Since the beginning of this century, concentration dependent quenching luminescence by oxygen has been used in a number of experimental settings. Using this analytical approach it is possible to detect oxygen without consuming it. We report about a new method of assessing cellular oxygen uptake using the luminescence quenching by oxygen. In an 850 microliters oxygen-tight microchamber, a fluorescent dye (tetraphenylporphyrin) adsorbed on a monolayer of gas chromatographic beads is separated from a cell suspension by a silicone membrane. An active electrochemical electrode integrated within the chamber is used to calibrate the fluorescence signal. Fluorescence is generated by green light (wavelength lambda = 546 nm), the intensity of the emitted red fluorescent light (lambda > 630 nm) is measured with a photomultiplier tube. As the first application of this new method, the oxygen uptake of human lymphocytes was determined. The cells were prepared using a routine separating technique-gradient centrifugation in Ficoll. For methodological reasons, all experiments were carried out at a temperature of 22 degrees C. In 7 consecutive measurements, an oxygen uptake of 2.81 +/- 0.85 mmol O2/10(11) lymphocytes/h was found. In less concentrated suspensions this figure is higher--an effect known as the "crowding phenomenon"--which means that with increasing cell concentration the specific oxygen uptake rate decreases. Our values for cellular oxygen uptake are higher than those in the literature. Since most reported studies on lymphocytes were done at 37 degrees C, a larger difference between our values and those in the literature would be expected. This may in part be attributed to different cell concentrations, separation techniques, etc. Another explanation might be the fact that electrochemical oxygen sensors used by other authors consume oxygen. Cell suspensions investigated with polarographic sensors therefore need to be stirred. Slow stirring reduces the values of oxygen uptake, so that a high stirring frequency is needed to obtain correct results (so-called stirring effect of polarographic electrodes). High stirring frequencies, however, destroy cells, which might be another factor explaining the results reported above. Our new method based on fluorescence quenching consumes no oxygen, and is therefore independent of stirring.

Cells, Cultured↗

PubMed2004

Foxes, green fields and Britishness: on the rhetorical construction of place and national identity.

This paper explores an accepted but under researched feature of national categories: their complex relationship with social constructions of place. We argue that social psychological work on national identification and mobilization would benefit from closer attention to this relationship. In order to develop this argument, we analyse a series of newspaper accounts published on behalf of the Countryside Alliance, a coalition formed to preserve rural 'ways of life' in the UK and, more specifically, to defend extant practices of hunting. Applying a discourse analytic method, we show how the Alliance has exploited the rhetoric of place in order to portray the preservation of hunting as an issue of national significance. By associating British identity with the 'rural idyll' of the English countryside, the organization has appealed to a place construction in which hunting and its associated activities become cast as essential expressions of the national character. Building on relevant work in geography and discursive psychology, we trace some wider implications of this process for social psychological research on category construction, reification and collective mobilization.

Cultural Characteristics↗

PubMed2002

Residues of methamidofos, malathion, and methiocarb in greenhouse crops.

The diminution of methamidofos, malathion, and methiocarb in different crops grown in greenhouses has been studied, including the presence of metabolites such as malaoxon, methiocarb sulfoxide, and methiocarb sulfone. The analytical method is based on dichloromethane extraction and GC-PFPD analysis. It has been validated establishing performance parameters such as recovery rates, precision, linear ranges, and limits of detection and quantification, which are low enough for ensuring that their corresponding MLRs can be adequately quantified. Samples of treated cucumbers and peppers grown in greenhouses were collected and analyzed during a 15-day period for obtaining the diminution rates of methamidofos and malathion. The behavior of methiocarb in treated green beans and tomatoes has been studied using analysis of variance (ANOVA) as the statistical tool, for establishing the influence of crop, season, application dose, and greenhouse design.

Capsicum↗

PubMed2005

A cost-effective screening method for pesticide residue analysis in fruits, vegetables, and cereal grains.

This paper reports the results of studies performed to investigate the potential of applying thin layer chromatography (TLC) detection in combination with selected extraction and cleanup methods, for providing an alternative cost-effective analytical procedure for screening and confirmation of pesticide residues in plant commodities. The extraction was carried out with ethyl acetate and an on-line extraction method applying an acetone-dichloromethane mixture. The extracts were cleaned up with SX-3 gel, an adsorbent mixture of active carbon, magnesia, and diatomaceous earth, and on silica micro cartridges. The Rf values of 118 pesticides were tested in eleven elution systems with UV, and eight biotest methods and chemical detection reagents. Cabbage, green peas, orange, and tomatoes were selected as representative sample matrices for fruits and vegetables, while maize, rice, and wheat represented cereal grains. As an internal quality control measure, marker compounds were applied on each plate to verify the proper elution and detection conditions. The Rf values varied in the different elution systems. The best separation (widest Rf range) was achieved with silica gel (SG)--ethyl acetate (0.05-0.7), SG--benzene, (0.02-0.7) and reverse phase RP-18 F-254S layer with acetone: methanol: water/30:30:30 (v/v) (0.1-0.8). The relative standard deviation of Rf values (CV(Rf)) within laboratory reproducibility was generally less than 20%, except below 0.2 Rf, where the CVRf rapidly increased with decreasing Rf values. The fungi spore inhibition, chloroplast inhibition, and enzyme inhibition were found most suitable for detection of pesticides primarily for confirming their identity or screening for known substances. Their use for determination of pesticide residues in samples of unknown origin is not recommended.

Chromatography, Thin Layer↗

PubMed2005

Near-critical carbon dioxide extraction and liquid chromatography determination of UV filters in solid cosmetic samples: a green analytical procedure.

Near-critical carbon dioxide extraction of four UV filters used as sunscreens in lipsticks and makeup formulations is reported. Extraction parameters were optimized. Efficient recoveries were obtained after 15 min of dynamic extraction with a 80:20 CO2/ethanol mixture at 300 atm and 54 degrees C, using a 1.8 mL/min flow rate. Extracts were collected in ethanol, and appropriately diluted with ethanol and 1% acetic acid to obtain a 70:30 v/v ethanol/1% acetic acid solution. The four UV filters were determined by LC with gradient elution using ethanol/1% acetic acid as mobile phase. The accuracy of the analytical procedure was estimated by comparing the results with those obtained by methods based on classical extraction. The proposed method only requires the use of CO2, ethanol and acetic acid avoiding the use of more toxic organic solvents, thus it could be considered as both operator and environment friendly.

Carbon Dioxide↗

PubMed2006

Quantum Monte Carlo method using a stochastic Poisson solver.

The quantum Monte Carlo (QMC) technique is an extremely powerful method to treat many-body systems. Usually the quantum Monte Carlo method has been applied in cases where the interaction potential has a simple analytic form, like the 1/r Coulomb potential. However, in a complicated environment as in a semiconductor heterostructure, the evaluation of the interaction itself becomes a nontrivial problem. Obtaining the potential from any grid-based finite-difference method for every walker and every step is infeasible. We demonstrate an alternative approach of solving the Poisson equation by a classical Monte Carlo calculation within the overall quantum Monte Carlo scheme. We have developed a modified "walk on spheres" algorithm using Green's function techniques, which can efficiently account for the interaction energy of walker configurations, typical of quantum Monte Carlo algorithms. This stochastically obtained potential can be easily incorporated with variational, diffusion, and other Monte Carlo techniques. We demonstrate the validity of this method by studying a simple problem, the polarization of a helium atom in the electric field of an infinite capacitor.

Journal Article↗

PubMed1986

Computer-aided diagnostic strategy selection.

Determination of the optimal diagnostic work-up strategy for the patient is becoming a major concern for the practicing physician. Overlap of the indications for various diagnostic procedures, differences in their invasiveness or risk, and high costs have made physicians aware of the need to consider the choice of procedure carefully, as well as its relation to management actions available. In this article, the author discusses research approaches that aim toward development of formal decision analytic methods to allow the physician to determine optimal strategy; clinical algorithms or rules as guides to physician decisions; improved measures for characterizing the performance of diagnostic tests; educational tools for increasing the familiarity of physicians with the concepts underlying these measures and analytic procedures; and computer-based aids for facilitating the employment of these resources in actual clinical practice.

Artificial Intelligence↗

PubMed2006

Protein microarrays on hybrid polymeric thin films prepared by self-assembly of polyelectrolytes for multiple-protein immunoassays.

We report here the development and characterization of protein microarrays fabricated on nanoengineered 3-D polyelectrolyte thin films (PET) deposited on glass slide by consecutive adsorption of polyelectrolytes via self-assembly technique. Antibodies or antigens were immobilized in the PET-coated glass slides by electrostatic adsorption and entrapment of porous structure of the 3-D polymer film and thus establishing a platform for parallel analysis. Both antigen and antibody microarrays were fabricated on the PET-coated slides, and direct and indirect immunoassays on protein microarrays for multiple-analyte detection were demonstrated. Microarrays produced on these PET-coated slides have consistent spot morphology and provide performance features needed for proteomic analysis. The protein microarrays on the PET films provide LOD as low as 6 pg/mL and dynamic ranges up to three orders of magnitude, which are wider than the protein microarrays fabricated on aldehyde and poly-L-lysine functionalized slides. The PET films constructed by self-assembly technique in aqueous solution is green chemistry based, cost-effective method to generate 3-D thin film coatings on glass surface, and the coated slide is well suited for immobilizing many types of biological molecules so that a wide variety of microarray formats can be developed on this type of slide.

Adsorption↗

PubMedDate not supplied

Efficient and accurate computation of the electric fields of excitable cells.

The numerical computation of the electric fields produced by excitable cells is important in many applications. Traditionally, a potential formulation was used. An integral formulation based on the differentiation of Green's theorem, which solves directly for the electric field, is presented herein. This is desirable because the electric field is proportional to current density, which can be calculated on the cell membrane. Fredholm equations of the second kind are produced, which are more appropriate than are those of the first kind (produced by formulations based on potential). Analytic formulae are presented to calculate the required matrix entries for zeroth order triangular elements that are generally used for field computations in boundary element methods. Results indicated that significantly more accurate answers may be obtained with significantly less computation by formulating the problem directly in terms of electric field as opposed to potential. This approach has the additional advantage that, for equal intracellular and extracellular conductivities, only one matrix must be generated, and no system of simultaneous equations must be solved; this drastically reduces storage and computation requirements. Examples are given to illustrate this technique and to compare the electric field formulation with the potential formulation.

Cell Membrane↗