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PubMed2005

Bilayer thickness and thermal response of dimyristoylphosphatidylcholine unilamellar vesicles containing cholesterol, ergosterol and lanosterol: a small-angle neutron scattering study.

Small-angle neutron scattering (SANS) measurements are performed on pure dimyristoyl phosphatidylcholine (DMPC) unilamellar vesicles (ULV) and those containing either 20 or 47 mol% cholesterol, ergosterol or lanosterol. From the SANS data, we were able to determine the influence of these sterols on ULV bilayer thickness and vesicle area expansion coefficients. While these parameters have been determined previously for membranes containing cholesterol, to the best of our knowledge, this is the first time such results have been presented for membranes containing the structurally related sterols, ergosterol and lanosterol. At both molar concentrations and at temperatures ranging from 10 to 45 degrees C, the addition of the different sterols leads to increases in bilayer thickness, relative to pure DMPC. We observe large differences in the influence of these sterols on the membrane thermal area expansion coefficient. All three sterols, however, produce very similar changes to membrane thickness.

Cholesterol↗

PubMed2000

Salt-dependent compaction of di- and trinucleosomes studied by small-angle neutron scattering.

Using small-angle neutron scattering (SANS), we have measured the salt-dependent static structure factor of di- and trinucleosomes from chicken erythrocytes and from COS-7 cells. We also determined the sedimentation coefficients of these dinucleosomes and dinucleosomes reconstituted on a 416-bp DNA containing two nucleosome positioning sequences of the 5S rDNA of Lytechinus variegatus at low and high salt concentrations. The internucleosomal distance d was calculated by simulation as well as Fourier back-transformation of the SANS curves and by hydrodynamic simulation of sedimentation coefficients. Nucleosome dimers from chicken erythrocyte chromatin show a decrease in d from approximately 220 A at 5 mM NaCl to 150 A at 100 mM NaCl. For dinucleosomes from COS-7 chromatin, d decreases from 180 A at 5 mM to 140 A at 100 mM NaCl concentration. Our measurements on trinucleosomes are compatible with a compaction through two different mechanisms, depending on the salt concentration. Between 0 and 20 mM NaCl, the internucleosomal distance between adjacent nucleosomes remains constant, whereas the angle of the DNA strands entering and leaving the central nucleosome decreases. Above 20 mM NaCl, the adjacent nucleosomes approach each other, similar to the compaction of dinucleosomes. The internucleosomal distance of 140-150 A at 100 mM NaCl is in agreement with distances measured by scanning force microscopy and electron microscopy on long chromatin filaments.

Animals↗

PubMed2003

Interaction of GroEL and GroEL/GroES complexes with a nonnative subtilisin variant: a small-angle neutron scattering study.

Small-angle neutron scattering and contrast variation were used to study the solution structure of GroEL and GroEL/GroES chaperonins complexed with a nonnative variant of the polypeptide substrate, subtilisin (PJ9). The subtilisin was 86% deuterated (dPJ9) so that it contrasted sufficiently with the chaperonin, allowing the contrast variation technique to be used to separate the scattering from the two components bound in the complex. Both the native double-ring GroEL and a single-ring mutant were used with dPJ9 bound in a 1:1 stoichiometry per GroEL toroid. This allowed both the position and the shape of dPJ9 in the GroEL/dPJ9 complexes to be determined. A single-ring GroEL/GroES variant complexed with one dPJ9 molecule was used to study the structural changes of dPJ9 in GroEL/GroES/dPJ9 complexes formed with ADP and with ATP. It was found that both the shape and the position of the bound dPJ9 in the GroEL/GroES/dPJ9 complex with ADP were the same as those in the GroEL/dPJ9 complex. However, dPJ9 assumed a more symmetric shape when bound in the GroEL/GroES/dPJ9 complex with ATP. This important observation reflects the relative ability of ATP to promote refolding of protein substrates relative to that of ADP.

Adenosine Diphosphate↗

PubMed2006

Solvent entrainment in and flocculation of asphaltenic aggregates probed by small-angle neutron scattering.

While small-angle neutron scattering (SANS) has proven to be very useful for deducing the sizes and masses of asphaltenic aggregates in solution, care must be taken to account for solvation effects within the aggregates so as to not err in the characterization of these important systems. SANS measurements were performed on solutions of asphaltenes dispersed in deuterated solvents in which a broad spectrum of solute and solvent chemical compositions was represented. Fits to the scattering intensity curves were performed using the Guinier approximation, the Ornstein-Zernike (or Zimm) model, a mass-fractal model, and a polydisperse cylinder model. The mass-fractal model provided apparent fractal dimensions (2.2-3) for the aggregates that generally decreased with increasing aggregate size, indicating increased surface roughness for larger aggregates. The polydisperse cylinder model provided typical values of the particle thicknesses from 5 to 32 angstroms, the average particle radius from 25 to 125 angstroms, and approximately 30% radius polydispersity. Subsequent calculation of average aggregate molar masses suggested a range of solvent entrainment from 30 to 50% (v/v) within the aggregates that were consistent with previous viscosity measurements. Additional calculations were performed to estimate the proportion of microparticle to nanoparticle aggregates in the solutions. The results indicate that the inclusion of solvation effects is essential for the accurate determination of aggregate molecular weights and fractal dimensions.

Journal Article↗

PubMed1997

Effect of N-lauryl-N,N-dimethylamine N-oxide on dimyristoyl phosphatidylcholine bilayer thickness: a small-angle neutron scattering study.

Small-angle neutron scattering on large extruded unilamellar dimyristoyl phosphatidylcholine (DMPC) liposomes was used to determine the DMPC bilayer thickness dL and its change in the presence of N-lauryl-N,N-dimethylamine N-oxide (LDAO). At 36 degrees C, the values of dL are dL = 3.44 +/- 0.10 nm and dL = 2.90 +/- 0.10 nm in pure DMPC bilayers and in bilayers at DMPC:LDAO = 2:1 molar ratio, respectively. Using the specific volumes of DMPC and LDAO and supposing that the molecular volumes and surface areas in the bilayer are additive, the surface areas of DMPC (ADMPC) and of LDAO (ALDAO) were found to be at 36 degrees C: ADMPC = 0.644 +/- 0.018 nm2 and ALDAO = 0.25 +/- 0.05 nm2.

Dimethylamines↗

PubMed1999

The use of multiple-scattering data to enhance small-angle neutron scattering experiments.

Multiple scattering of neutrons by the inhomogeneities responsible for small-angle neutron scattering (SANS) during the passage of the beam through the specimen can be used to provide valuable information about the shape of the objects and the absolute value of the contrast between the scattering particles and the matrix. The neutrons emerging from the specimen are classified into those that have been scattered n times. The index n ranges from zero to infinity. The remnant of the incident beam is the group of neutrons for which n equals zero. Each group contributes separately to the scattering profile. The small-angle scattering cross section is independent of the neutron wavelength for n = 1 only. Thus collection of data as a function of specimen thickness and of neutron wavelength will provide a number of different profiles describing the same physical situation. Simultaneous analysis of these profiles provides absolute values of the cross section for scattering into the small-angle region and of the cross section for removal of neutrons from the small-angle region. So that the method can be used generally, a profile function that is a very good approximation to those in the literature is introduced. The implications for time-of-flight SANS are discussed.

Journal Article↗

PubMed2000

Anomalous colloidal stability of protein coated polystyrene latex beads studied by small angle light scattering.

Results of small angle laser light scattering experiments carried out on polystyrene latex beads coated with lysate of Plasmodium falciparum (Pf) antigen (Ag) and human seropositive sera (10:1 ratio) are reported for various NaCl concentrations (0-300 mM). The protein coated beads showed time-dependent coagulation. The normalised intensity of scattered light I(s)(t)/I(0) showed I(s)(t)/I(0)=1+(Gammat)(delta) behaviour with the coagulation rate, Gamma and exponent, delta showing anomalous dependence on NaCl concentration. The coagulation rate exhibited strong increase up to NaCl concentration of 50 mM, above this and up to 300 mM the coagulation rate was found to remain independent of NaCl concentration yielding non-DLVO behaviour. The same was true for delta which increased from 1.04+/-0.06 to 6.94+/-0.07 as NaCl concentration was raised from 0 to 50 mM. Above 50 mM it remained constant with delta=6.94+/-0.07. Results are discussed through Smoluchowski aggregation kinetics and theoretical construction of interparticle interaction potentials relevant to our problem.

Animals↗

PubMed2005

Structural changes and chain radius of gyration in cold-drawn polyethylene after annealing: small- and wide-angle X-ray scattering and small-angle neutron scattering studies.

Samples made from linear polyethylene were drawn at room temperature and subsequently annealed at high temperatures below the melting point. The structural changes of the crystalline lamellae and lamellar superstructures as well as the single chain radius of gyration were studied by means of combined small- and wide-angle X-ray scattering and small-angle neutron scattering (SANS). After drawing, the polymeric chain segments in the crystalline phase are preferentially oriented along the drawing direction with a high degree of orientation whereas the lamellae in the samples are found to be slightly sheared exhibiting oblique surfaces as evidenced by X-ray scattering. SANS indicates that the chains are highly elongated along the drawing direction. Annealing the deformed samples at temperatures where the mechanical alpha-process of polyethylene is active leads to a thickening of both crystalline lamellae and amorphous layers. The chains in the crystalline phase retain their high degree of orientation after annealing while the lamellae are sheared to a larger extent. In addition, there is also lateral growth of the crystalline lamellae during high-temperature annealing. Despite the structural changes of the crystalline and amorphous regions, there is no evidence for global chain relaxation. The global anisotropic shape of the chains is preserved even after prolonged annealing at high temperatures. The results indicate that the mobility of polyethylene chains-as seen, e.g., by 13C NMR-is a local phenomenon. The results also yield new insight into mechanical properties of drawn PE, especially regarding stress relaxation and creep mechanisms.

Journal Article↗

PubMedDate not supplied

The solution structure of recA filaments by small angle neutron scattering.

The technique of small angle neutron scattering has been applied to study the structure in solution of recA self-polymers and various recA-DNA complexes. These results are compared with those recently obtained by other physical techniques.

Crystallization↗

PubMed2005

beta-lactoglobulin under high pressure studied by small-angle neutron scattering.

We used small-angle neutron scattering to study the effects of the high hydrostatic pressure on the structure of beta-lactoglobulin. Experiments were carried out at pH 7 on the dimeric form of the protein in a pressure range going from 50 MPa to 300 MPa. These measurements allow the protein size and the interactions between macromolecules to be studied during the application of pressure. Increasing pressure up to 150 MPa leads to a swollen state of the protein that gives rise to an increase of the radius of gyration by about 7%. Within this pressure range, we also show that the interaction between macromolecules weakens although it remains repulsive. The measurements show an aggregation process occurring above 150 MPa. From the spectra analysis, it appears that the aggregation occurs mainly by association of the dimeric units.

Animals↗

PubMed2005

Phase behavior of block co-poly(ethylene oxide-butylene oxide), E18B9 in water, by small angle neutron scattering.

We present a small angle neutron scattering (SANS) study into the micellar structures of diblock copolymer E18B9 (where E denotes a ethylene oxide unit and B denotes a butylene oxide unit, 18 and 9 being the number of repeat units respectively) in aqueous solution over a range of five different concentrations (0.2, 1.0, 10.0, 20.0, and 40.0% (by mass fraction)) and eight temperatures (10 to 90 degrees C). The NG7 30 m SANS instrument provides a q range of 0.0009 to 0.5548 A(-1), thus probing the structure over a very broad length scale. At low temperature and low concentration, spherical micelles exist, elongating into worm-like structures at higher temperatures. This transition is observed by the scaling of the scattered intensity at low q and confirmed upon fitting to an appropriate model. Upon increasing concentration, the micelles pack into ordered arrays of either hexagonally packed rod-like micelles or lamellar sheets, again dependent on temperature. Both concentration and temperature effects of this block copolymer have been discussed.

Journal Article↗

PubMed1980

Physical characteristics of human transferrin from small angle neutron scattering.

The technique of small angle neutron scattering has been used to determine the molecular shape, the volume, and the molecular weight of pooled human transferrin in an aqueous solution isotonic with blood. Analysis of the measurements assuming a spheroidal molecular shape indicates that an oblate spheroid with semi-axes of length 46.6 +/- 1.4, 46.6 +/- 1.4 and 15.8 +/- 3.8 A, and a molecular volume of (144 +/- 45) X 10(3) A3 is the best simple approximation to the shape of the transferrin molecule. The radius of gyration, Rg, determined from a Guinier plot is 30.25 +/- 0.49 A, in agreement with Rg calculated for the oblate spheroidal shape. The molecular weight is determined to be (75 +/- 5) X 10(3). The shape-independent molecular volume is found to be (98 +/- 10) X 10(3) A3. The difference in the two volumes suggests that transferrin is not a uniform spheroid but may have a more complex shape.

Hemoglobins↗

PubMed2004

Characterization of nanoporous low-k thin films by small-angle neutron scattering contrast variation.

Small-angle neutron scattering contrast variation is applied to characterization of nanoporous low-dielectric constant (low-k) thin films. Films are exposed to saturated solvent vapor in air, whereby the pores fill with liquid by capillary condensation. The pores are filled with mixtures of hydrogen- and deuterium-containing solvents to vary the neutron contrast with the matrix (wall). The composition of the solvent mixture is systematically varied to identify a composition that minimizes the scattered intensity (contrast match point). From the contrast match point composition, film characteristics including matrix density and homogeneity are assessed. Four spin-on low-k materials including a methylsilsesquioxane, an organic polymer, a xerogel, and a hydrogensilsesquioxane are characterized by the new technique. Calculated matrix mass densities are compared to independent density measurements obtained by an established specular X-ray reflectivity technique. We find no evidence of "closed pores", defined here as pores inaccessible to the probe solvent, in any of the materials studied.

Journal Article↗

PubMed2003

Distribution of transport current in a type-II superconductor studied by small-angle neutron scattering.

We report small-angle neutron scattering measurements on the vortex lattice in a PbIn polycrystal in the presence of an applied current. Using the rocking curves as a probe of the distribution of current in the sample, we observe that vortex pinning is due to the surface roughness. This leads to a surface current that persists in the flux-flow region. We show the influence of surface treatments on the distribution of this current.

Journal Article↗

PubMed2004

Models to analyze small-angle neutron scattering from unilamellar lipid vesicles.

Small-angle scattering has been employed to study the structure of lipid bilayers in unilamellar vesicles. This paper evaluates the use of a model approach for the analysis of such data. A long molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer in the L(alpha) phase provides detailed structural information from which scattering length density profiles and scattering intensity are obtained. A sequence of increasingly realistic models are defined and then fit to the simulated scattering intensity data for values of q that are experimentally accessible. The models are evaluated by how well they fit the intensity data and the structural parameters of the simulation. Although the conventional approach that extracts only the radius of gyration from a Kratky-Porod plot provides a reasonable fit to much of the data, the available experimental q range supports refined models with two independent parameters. Of the many two-parameter models, we propose that particular choices should be inspired by the functional form of the scattering length density profile of simulations. Constraints that limit realistic models to two independent parameters are described in detail. The analysis supports the proposition that reliable results for area/lipid and hydrocarbon thickness can be obtained from small-angle neutron scattering of unilamellar vesicles.

1,2-Dipalmitoylphosphatidylcholine↗

PubMed1997

Electron dose calculations using the Method of Moments.

The Method of Moments is generalized to predict the dose deposited by a prescribed source of electrons in a homogeneous medium. The essence of this method is (i) to determine, directly from the linear Boltzmann equation, the exact mean fluence, mean spatial displacements, and mean-squared spatial displacements, as functions of energy; and (ii) to represent the fluence and dose distributions accurately using this information. Unlike the Fermi-Eyges theory, the Method of Moments is not limited to small-angle scattering and small angle of flight, nor does it require that all electrons at any specified depth z have one specified energy E(z). The sole approximation in the present application is that for each electron energy E, the scalar fluence is represented as a spatial Gaussian, whose moments agree with those of the linear Boltzmann solution. Numerical comparisons with Monte Carlo calculations show that the Method of Moments yields expressions for the depth-dose curve, radial dose profiles, and fluence that are significantly more accurate than those provided by the Fermi-Eyges theory.

Electrons↗

PubMed2005

Comparative analysis of the structure of sterically stabilized ferrofluids on polar carriers by small-angle neutron scattering.

Results of experiments on small-angle neutron scattering from ferrofluids on polar carriers (pentanol, water, methyl-ethyl-ketone), with double-layer sterical stabilization of magnetic nanoparticles, are reported. Several types of spatial structural organization are observed. The structure of highly stable pentanol-based samples is similar to that of stable ferrofluids based on organic non-polar carriers (e.g., benzene) with mono-layer covered magnetic nanoparticles. At the same time, the effect of the interparticle interaction on the scattering is stronger in polar ferrofluids because of the structural difference in the surfactant shell. The structure of the studied methyl-ethyl-ketone- and water-based ferrofluids essentially different from the previous case. The formation of large (>100 nm in size) elongated or fractal aggregates, respectively, is detected even in the absence of external magnetic field, which corresponds to weaker stability of these types of ferrofluids. The structure of the fractal aggregates in water-based ferrofluids does not depend on the particle concentration, but it is sensitive to temperature. A temperature increase results in a decrease in their fractal dimension reflecting destruction of the aggregates. In addition, in water-based ferrofluids these aggregates consist of small (radius approximately 10 nm) and temperature-stable primary aggregates.

Colloids↗

PubMed2002

Microphase separation in Pr0.67Ca0.33MnO3 by small-angle neutron scattering.

We have evidenced by small-angle neutron scattering at low temperature the coexistence of ferromagnetism (F) and antiferromagnetism (AF) in Pr0.67Ca0.33MnO3. The results are compared to those obtained in Pr0.80Ca0.20MnO3 and Pr0.63Ca0.37MnO3, which are F and AF, respectively. Quantitative analysis shows that the small-angle scattering is not due to a mesoscopic mixing but to a nanoscopic electronic and magnetic "red cabbage" structure, in which the ferromagnetic phase exists in the form of thin layers in the AF matrix (stripes or 2D "sheets").

Journal Article↗