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At least 217 records · Page 12Linked to original sources
PubMed2003

Single complexation force of 18-crown-6 with ammonium ion evaluated by atomic force microscopy.

The cation complexation force of 18-crown-6 has been measured in ethanol by means of atomic force microscopy using probe tips and mica substrates modified chemically with 18-crown-6 and ammonium ion, respectively. The specific complexation force was suppressed by free potassium ion in the measurement solution, indicating a blocking effect based on the competitive complexation of the 18-crown-6 moiety between the free ion and the ammonium ion bound to the substrate. The single complexation force of 18-crown-6 with ammonium ion was evaluated to be about 60 pN in ethanol by autocorrelation analyses of the histograms for observed forces.

Crown Ethers↗
PubMed2001

Synthesis and X-ray crystal structure determination of first examples of donor-functionalized terphenyl lanthanide complexes.

The molecular structures of novel donor-functionalized terphenyl derivatives of trivalent ytterbium, yttrium, and samarium of composition [DanipYb(mu2-Cl)2(mu3-Cl)Li(THF)]2 (1) and [DanipLn(mu2-Cl)2(mu2-Cl)Li(THF)2]2 (Ln = Y, 2; Ln = Sm, 3) are reported [Danip = 2,6-di(o-anisol)phenyl]. The complexes are obtained from the reaction of equimolar amounts of DanipLi and LnCl3 (Ln = Yb, Y, Sm) in tetrahydrofuran at room temperature in 60% yield. 1-2 toluene crystallizes in the monoclinic space group Ponebar. Crystal data for 1-2 toluene at 203 K: a = 9.7281(9) A; b = 12.7989(12) A; c = 13.4870(12) A; alpha = 91.553(2) degrees; beta = 103.957(2) degrees; gamma = 109.916(2) degrees; V = 1521.2(2) A(3); Z' = 1; D(calcd) = 1.615 g cm(-3); R1 = 3.43%. 2-toluene crystallizes in the monoclinic space group Ponebar. Crystal data for 2-toluene at 203 K: a = 10.4152(10) A; b = 12.5783(12) A; c = 14.4640(14) A; alpha = 69.963(2) degrees; beta = 80.900(2) degrees; gamma = 66.603(2) degrees; V = 1633.3(3) A(3); Z' = 1; D(calcd) = 1.386 g cm(-3); R1 = 4.07%. 3-toluene crystallizes in the monoclinic space group Ponebar. Crystal data for 3-toluene at 203 K: a = 10.3457(8) A; b = 12.5658(10) A; c = 14.4365(11) A; alpha = 70.2250(10) degrees; beta = 81.2820(10) degrees; gamma = 66.8330(10) degrees; V = 1623.3(2) A(3); Z' = 1; D(calcd) = 1.521 g cm(-3); R1 = 3.40%. Complexes 1-3 represent first examples of donor-functionalized terphenyl complexes of the elements ytterbium, yttrium, and samarium, respectively. The molecular structures of 1-3 feature a "constraint geometry" type arrangement of the Danip ligand at the lanthanide atom. The complexes reported are dimeric and composed of lithium chloride bridged DanipLnCl(2) moieties (Ln = Yb, Y, Sm), stabilized through additional coordination of two methoxy functions to the lanthanide atom.

Journal Article↗
PubMed2006

Two-component atomic force microscopy recognition imaging of complex samples.

Biological complexes are typically multisubunit in nature and the processes in which they participate often involve protein compositional changes in themselves and/or their target substrates. Being able to identify more than one type of protein in complex samples and to track compositional changes during processes would thus be very useful. Toward this goal, we describe here a single-molecule technique that can simultaneously identify two types of proteins in compositionally complex samples. It is an adaptation of the recently developed atomic force microscopy (AFM) recognition imaging technique but involves the tethering of two different types of antibodies to the AFM tip and sequential blocking with appropriate antigenic peptides to distinguish the recognition from each antibody. The approach is shown to be capable of simultaneously identifying in a single AFM image two specific components, BRG1 and beta-actin, of the human Swi-Snf ATP-dependent nucleosome remodeling complex and two types of histones, H2A and H3, in chromatin samples.

Actins↗
PubMed2004

Solution, solid state and biological characterization of ruthenium(III)-DMSO complexes with purine base derivatives.

Two new complexes of Ru(III) with purine base derivatives, [mer-RuCl(3)(acv)(DMSO-S)(C(2)H(5)OH)].C(2)H(5)OH (1) (acv=acyclovir, DMSO=dimethyl sulfoxide) and [trans-RuCl(4)(guaH)(DMSO-S)].2H(2)O (2) (guaH=protonated molecule of guanine), were prepared from the same Ru(III) precursor, [trans-RuCl(4)(DMSO-S)(2)](-), by substitution of one DMSO-S. Coordination of acv induced also replacement of one chloride by an ethanol molecule. This reactivity difference was explained by striking contrasts in the hydrogen bonding schemes of the two complexes, evidenced in their X-ray crystal structures. In 1 the guanine derivative acyclovir is coordinated to ruthenium through the N(7) atom, while in 2 the protonated guanine molecule is bound through the N(9) atom. Both complexes were also characterized by various physico-chemical methods in the solid state and in the solution. In vitro, the biological activity of 2 and of the previously described complexes [mer-RuCl(3)(acv)(DMSO-S)(CH(3)OH)].0.5CH(3)OH (3) and [mer-RuCl(3)(acv)(DMSO-S)(H(2)O)].H(2)O (4) on tumour cells appear to be very similar to that of NAMI-A (NAMI-A=[ImH][trans-RuCl(4)(DMSO-S)Im]). All compounds are only weakly active on tumour cell proliferation but show an interesting proadhesive effect that suggest possible activity on tumour malignancy.

Adenocarcinoma↗
PubMed2001

Binding site elucidation of hydantoin-based antagonists of LFA-1 using multidisciplinary technologies: evidence for the allosteric inhibition of a protein--protein interaction.

The binding site on the lymphocyte function-associated antigen-1 (LFA-1) of a class of hydantoin-based antagonists of leukocyte cell adhesion has been identified. This site resides in the inserted-domain (I-domain) of the CD11a chain at a location that is distal to residues known to be required for interactions with the intercellular adhesion molecules. This finding supports the hypothesis that the molecules are antagonizing cell adhesion via an allosteric modification of LFA-1. The binding site was identified using an integrated immunochemical, chemical, and molecular modeling approach. Antibodies that map to epitopes on the I-domain were blocked from binding to the purified protein by the hydantoins, indicating that the hydantoin-binding site resides on the I-domain. Photoaffinity labeling of the I-domain followed by LC/MS and LC/MS/MS analysis of the enzymatic digest identified proline 281 as the primary amino acid residue covalently attached to the photoprobe. Distance constraints derived from this study coupled with known SAR considerations allowed for the construction of a molecular model of the I-domain/inhibitor complex. The atomic details of the protein/antagonist interaction were accurately predicted by this model, as subsequently confirmed by the X-ray crystal structure of the complex.

Allosteric Site↗
PubMed2004

Theory of hydrogen-related metastability in disordered silicon.

Density functional electronic structure calculations are employed to examine hydrogen for a variety of configurations in silicon. A novel complex is found for hydrogen in amorphous silicon. The complex involves the breaking of a weak silicon bond to form two Si-H bonds with both hydrogens in between the original silicon atoms. This complex provides a microscopic model for new metastable complexes observed in amorphous silicon. Mechanisms for hydrogen-related metastability are discussed for amorphous and polycrystalline silicon.

Journal Article↗
PubMed2003

Hydrosilylation of a dinuclear tantalum dinitrogen complex: cleavage of N2 and functionalization of both nitrogen atoms.

Hydrosilylation of the ditantalum dinitrogen complex ([NPN]Ta)2(mu-H)2(mu-eta1:eta2-N2) proceeds via an addition reaction to produce ([NPN]TaH)(mu-H)2(mu-eta1:eta2-N-NSiH2Bu)(Ta[NPN]), which contains a new N-Si bond and a terminal tantalum hydride; this species has been characterized by NMR spectroscopy and X-ray diffraction. This complex undergoes reductive elimination of H2 followed by N-N bond cleavage to generate a new intermediate with the formula ([NPN]TaH)(mu-N)(mu-NSiH2Bu)(Ta[NPN]); confirmation of N-N bond cleavage is evident from the 15N-labeled isotopomer that displays an absence of 15N-15N scalar coupling in the 15N NMR spectrum. In the presence of additional silane, a second hydrosilylation and reductive elimination results to give ([NPN]Ta)2(mu-NSiH2Bu)2, a species in which each dinitrogen-derived N atom has been converted to a bridging silylimide ligand. This latter complex displays C2h symmetry both in solution and in the solid state.

Journal Article↗
PubMed2000

A novel diiron complex as a functional model for hemerythrin.

Diiron(II) complexes with a novel dinucleating polypyridine ligand, N,N,N',N'-tetrakis(6-pivalamido-2-pyridylmethyl)-1,3-diaminopropan-2-ol (HTPPDO), were synthesized as functional models of hemerythrin. Structural characterization of the complexes, [Fe2II(Htppdo)(PhCOO)](ClO4)3 (1), [Fe2II(Htppdo)((p-Cl)PhCOO)](ClO4)3 (2), [Fe2II(Htppdo)((p-Cl)PhCOO)](BF4)3 (2') and [Fe2II(tppdo)((p-Cl)PhCOO)](ClO4)2 (3), were accomplished by electronic absorption, and IR spectroscopic, electrochemical, and X-ray diffraction methods. The crystal structures of 1 and 2' revealed that the two iron atoms are asymmetrically coordinated with HTPPDO and bridging benzoate. One of the iron centers (Fe(1)) has a seven-coordinate capped octahedral geometry comprised of an N3O4 donor set which includes the propanol oxygen of HTPPDO. The other iron center (Fe(2)) forms an octahedron with an N3O3 donor set and one vacant site. The two iron atoms are bridged by benzoate (1) or p-chlorobenzoate (2). On the other hand, both Fe atoms of complex 3 are both symmetrically coordinated with N3O4 donors and two bridging ligands; benzoate and the propanolate of TPPDO. Reactions of these complexes with dioxygen were followed by electronic absorption, resonance Raman and ESR spectroscopies. Reversible dioxygen-binding was demonstrated by observation of an intense LMCT band for O2(2-) to Fe(III) at 610 (1) and 606 nm (2) upon exposure of dioxygen to acetone solutions of 1 and 2 prepared under an anaerobic conditions at -50 degrees C. The resonance Raman spectra of the dioxygen adduct of 1 exhibited two peaks assignable to the nu(O-O) stretching mode at 873 and 887 cm(-1), which shifted to 825 and 839 cm(-1) upon binding of (18)O2. ESR spectra of all dioxygen adducts were silent. These findings suggest that dioxygen coordinates to the diiron atoms as a peroxo anion in a mu-1,2 mode. Complex 3 exhibited irreversible dioxygen binding. These results indicate that the reversible binding of dioxygen is governed by the hydrophobicity of the dioxygen-binding environment rather than the iron redox potentials.

Crystallography, X-Ray↗
PubMed2005

Syntheses, structures, and luminescent and magnetic properties of novel three-dimensional lanthanide complexes with 1,3,5-benzenetriacetate.

Five novel lanthanide complexes with the formulas [Nd(bta)(H2O)2.4.35H2O]n(1), [Sm(bta)(H2O)2.4.5H2O]n (2), [Eu(bta)(H2O).1.48H2O]n (3), [Tb(bta)(H2O).1.31H2O]n (4), and [Yb(bta)(H2O).H2O]n (5) (H3bta = 1,3,5-benzenetriacetic acid) have been prepared by using the corresponding lanthanide salt and H3bta. The results of an X-ray crystallographic analysis revealed that all the complexes have three-dimensional channel-like structures, in which the bta3- ligands adopt different coordination modes: monodentate and mu2-eta2:eta1-bridging coordination modes in 1, 2, and 5 and mu2-eta1:eta1-bridging and mu2-eta2:eta1-bridging coordination modes in 3 and 4, respectively. Complexes 1 and 2, as well as 3 and 4, are isostructural, respectively, in which all the Ln(III) (Ln = Nd, Sm, Eu, and Tb) atoms are nine-coordinated, while the Yb(III) atoms in complex 5 are eight-coordinated. Both complexes 3 and 4 showed strong luminescence upon excitation, and their luminescence decay curves fit well with single exponential decays of which the lifetime is 0.45 ms for 3 and 1.0 ms for 4. The magnetic properties of the complexes were investigated in the temperature range of 1.8-300 K.

Journal Article↗
PubMed1982

Homologous and hybrid calcium complexes of A23187 and hypoglycemic sulfonylureas: nuclear magnetic resonance and conformational analysis.

Hypoglycemic sulfonylureas (e.g., gliclazide) are able to transport calcium across hydrophobic domains. Gliclazide and the ionophore A23187 act synergistically upon calcium transport. One calcium atom is complexed by either two molecules of sulfonylureas (or A23187) or one molecule each of sulfonylurea and A23187; the existence of such hybrid complexes has been documented by nuclear magnetic resonance. Conformation analysis of the calcium-gliclazide complex suggests close apposition of the toluyl groups in the gliclazide molecules.

Anti-Bacterial Agents↗
PubMed2006

Effect of constrained donor atom orientations on the stabilities, complexation kinetics, redox potentials, and structures of macrocyclic polythiaether Complexes. Copper(II) complexes with cyclopentanediyl derivatives of [14]aneS4 in 80% methanol.

The two ethylene bridges in the macrocyclic tetrathiaether 1,4,8,11-tetrathiacyclotetradecane ([14]aneS(4)) have been systematically replaced by cis- or trans-1,2-cyclopentane to generate a series of new ligands that exhibit differing preferences for the orientation of the sulfur donor atoms while maintaining constant inductive effects. The resulting five dicyclopentanediyl derivatives, along with two previously synthesized monocyclopentanediyl analogues, have been complexed with Cu(II), and their stability constants, formation and dissociation rate constants, and redox potentials have been determined in 80% methanol/20% water (by weight). The crystal structures of the Cu(II) complexes with the five dicyclopentanediyl-[14]aneS(4) diastereomers as well as the structures for a representative Cu(I) complex and one of the free ligands have also been determined. The properties of these complexes are compared to previous data obtained for the corresponding cyclohexanediyl derivatives in an attempt to shed additional light on the influence of sterically constraining substituents upon the properties of macrocyclic ligand complexes.

Journal Article↗
PubMed2002

Reactions of metalloalkynes. New C2 bonding mode in a trimetallic complex.

The reaction of the silver complexes [((Ru(CO)2(eta-C5H4R))2(mu-C identical to C))3Ag3][BF4]3 (R = H or Me) with [RuCl(CO)2(eta-C5H4R)] at room temperature gave the new trimetallic complexes [(Ru(CO)2(eta-C5H4R))3(eta 1:eta 2-C identical to C))][BF4] which contain the C2(2-) ligand surrounded by ruthenium atoms; these complexes do not contain metal-metal bonds and were characterised by single crystal X-ray studies; the solid state structure is not retained in solution, where it is found to be fluxional on the NMR timescale and the dynamic process postulated could be described as 'bearing-like'.

Journal Article↗
PubMed2004

Aerial oxidation of primary alcohols and amines catalyzed by Cu(II) complexes of 2,2'-selenobis(4,6-di-tert-butylphenol) providing [O,Se,O]-donor atoms.

Seven copper(II)-complexes 1-7 with the ligand 2,2'-selenobis(4,6-di-tert-butylphenol) providing [O,Se,O]-donor atoms have been isolated and characterized. Three of them 1, 2 and 3 are mononuclear, two 4 and 7 dinuclear and 5, 6 are trinuclear. The crystal structures of the complexes were determined by X-ray diffraction and the electronic structures were established by various physical methods including EPR and variable temperature (2-290 K) susceptibility measurements. The magnetic behaviour of the compounds 4-6 exhibits antiferromagnetic exchange coupling resulting in well-isolated S(t)= 1/2 ground state for 5 and 6 and a diamagnetic spin state for 4. Complexes 5 and 6 belong to the class of asymmetric trinuclear copper(II) complexes modelling the trinuclear copper site in multicopper oxidases. Complex 1 is a catalyst in the presence of a strong base for the aerial oxidation of primary alcohols to the corresponding aldehydes. A dinuclear complex, seemed to be 4, prepared in situ has been found to be a catalyst for the aerial oxidation of primary amines containing alpha-C-H atoms. Primary kinetic isotope effects show that H-abstraction from the alpha-carbon atom of a coordinated substrate (alcoholato or amine) is the rate-determining step in both cases. Two functional models for the metalloenzymes galactose oxidase and amine oxidases are thus described.

Alcohols↗
PubMed1999

Unique Rearrangement of an Oxycarbyne Complex: Synthesis and Structure of Novel Diborane(4)yl Complexes.

Nucleophilic attack of a carbonyl oxygen atom of the complexes K[(eta(5)-C(5)H(5))M(CO)(3)] (M=Mo, W) on each boron center gave the oxycarbyne complexes 1. These novel products undergo a unique type of rearrangement with quantitative formation of the diborane(4)yl complexes 2. Complex 2 (M=Mo) is the first structurally characterized boryl complex with a Mo-B bond (see structure).

Journal Article↗
PubMed2001

Umbravirus-encoded movement protein induces tubule formation on the surface of protoplasts and binds RNA incompletely and non-cooperatively.

Various functions of the cell-to-cell movement protein (MP) of Groundnut rosette virus (GRV) were analysed. The GRV ORF4-encoded protein was shown by immunofluorescence microscopy to generate tubular structures that protrude from the surface of the protoplast. The protein encoded by ORF4 was assessed also for RNA-binding properties. This protein was tagged at its C terminus with six histidine residues, produced in Escherichia coli using an expression vector and purified by affinity chromatography. Gel retardation analysis demonstrated that, in contrast to many other viral MPs, including the 3a MP of Cucumber mosaic virus (CMV), the ORF4-encoded protein bound non-cooperatively to viral ssRNA and formed complexes of low protein:RNA ratios. Competition binding experiments showed that the ORF4-encoded protein bound to both ssRNA and ssDNA without sequence specificity, but did not bind to dsDNA. UV cross-linking and nitrocellulose membrane-retention assays confirmed that both the GRV and the CMV MPs formed complexes with ssRNA and that these complexes showed similar stability in NaCl. Probing the MP-RNA complexes by atomic force microscopy demonstrated that the ORF4-encoded protein bound RNA incompletely, leaving protein-free RNA segments of varying length, while the CMV 3a protein formed highly packed complexes. The significance of the two properties of limited RNA binding and tubule formation of the umbraviral MP is discussed.

Arachis↗
PubMed2006

Variation of atomic charges on proton transfer in strong hydrogen bonds: the case of anionic and neutral imidazole-acetate complexes.

The variation of atomic charges upon proton transfer in hydrogen bonding complexes of 4-methylimidazole, in both neutral and protonated cationic forms, and acetate anion, is investigated. These complexes model the histidine (neutral and protonated)-aspartate pair present in active sites of proteases where strong N--H...O hydrogen bonds are formed. Three procedures (Merz-Kollman scheme, Natural Population Analysis, and Atoms in Molecules Method) are used to compute atomic charges and explore their variation upon H-transfer in the gas phase and in the presence of two continuum media with dielectric constants 5 (protein interiors) and 78.39 (water). The effect of electron correlation was also studied by comparing Hartree-Fock and MP2 results for both complexes in the gas phase. Greater net charge interchanged upon H-transfer is observed in the anionic complex with respect to the neutral complex. Raising the polarity of the medium increases the amount of net charge transfer in both complexes, although the neutral system exhibits a larger sensitivity to the presence of solvent. Charge transfer associated to N--H...O and N...H--O bonds reveal the ionic contribution to the interaction depending on the number of charged subunits but the presence of solvent affects little this quantity. The lack of electron correlation overestimates all the charges as well as their variations and so uncorrelated calculations should be avoided.

Anions↗
PubMed2004

Biphenyl derived Schiff-base vanadium(V) complexes with pendant OH-groups--structure, characterization and hydrogen peroxide mediated sulfide oxygenation.

A series of mononuclear oxovanadium(v) complexes of tridentate Schiff bases HL(1)-HL(4) and H(2)L(5)-H(2)L(8) derived from 6-phenylsalicylaldehyde and 6-(2-hydroxyphenyl)salicylaldehyde and four different amines was synthesized. The systematically selected ligands contain aliphatic or aromatic nitrogen, or alkoxy- and phenoxy-oxygen as third donor atom. The complexes were characterised by spectroscopic methods in solution and the solid state. Single-crystal X-ray analyses were performed with VO(2)L(1)(), VO(2)L(3)x1/2EtOH (), VO(2)L(4)(), VO(OiPr)L(7)xiPrOH, VO(OiPr)L(8) and H(2)L(8). For all compounds the vanadium(v) cores contain distorted tetragonal pyramidal geometry around the dioxo- and oxovanadium site at which the N(2)O- and NO(2)-donor ligands bind equatorially. Complexes and display intramolecular hydrogen bonding of the pendant hydroxyphenyl group to a coordinated oxygen trans to a nitrogen atom and therefore serve as suitable models for the native site of vanadium dependent haloperoxidases. Variable-temperature (1)H NMR spectra revealed significant hydrogen bond interaction in acetonitrile solution. In situ prepared catalysts are active for hydrogen peroxide mediated oxygenation of ethyl phenyl sulfide and showed complete conversion of the substrate to ethyl phenyl sulfoxide, together with small amounts of the corresponding sulfone, as detected by GC/MS after 10 min. The complex of H(2)L(7) turned out to be most efficient while HL(1) and HL(2) were completely inactive. Catalysis is supported by the pendant OH group in the complex of HL(3), the catalyst is twice as active as the complex of HL(4).

Biphenyl Compounds↗