Did a major immunological event shape the evolutionary histories of apes and Old World monkeys?
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Animals↗
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Results for “Cercopithecidae”
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Comparative morphometric study of the australopithecine vertebral series Stw-H8/H41.
Lower spinal structure correlates well with positional behavior among mammals. Nonetheless, the functional morphology of the axial post-crania of australopithecines has received less attention than their appendicular skeletons. This paper presents a detailed description and comparative morphometric analysis of the australopithecine thoracolumbar vertebral series Stw-H8/H41, and examines spinal mechanics in early hominids. Stw-H8/H41 is an important specimen, as the australopithecine vertebral sample is small, and vertebral series are more useful than isolated elements for the interpretation of spinal function. Results of the study support the interpretation that australopithecine species are highly sexually dimorphic. The study also reveals a considerable amount of morphometric variation other than size among australopithecine vertebrae, though the sample is too small and incomplete to ascertain whether this indicates significant interspecific differences in spinal function. Most importantly, structural and metric observations confirm that the morphology of the lower spine in australopithecines has no modern analogue in its entirety. Aspects of zygapophyseal structure, numerical composition of the lumbar region, and centrum wedging suggest that the australopithecine vertebral column was adapted to human-like intrinsic lumbar lordosis and stable balance of the trunk over the pelvis in sustained bipedal locomotion. However, relative centrum size in australopithecines indicates that either they had a different mechanism for channeling vertical forces through the vertebral column than humans, or differed behaviorally from humans in ways that produced smaller increments of compression across their centra. These findings have important implications for hypotheses of australopithecine positional behavior, and demonstrate that larger samples and more complete vertebral series are needed to improve our understanding of australopithecine spinal function.
Adult↗
Faunal correlation of Wadi Moghara, Egypt: implications for the age of Prohylobates tandyi.
Wadi Moghara, Egypt, is an early Miocene fossil locality with a mammalian fauna that includes Prohylobates tandyi, one of the earliest known representatives of the Cercopithecoidea. Faunal correlations were conducted between Moghara, Gebel Zelten (Libya) and a series of East African fossil sites with established radiometric dates in order to estimate the age of the Moghara mammals, including P. tandyi. Results confirm hypotheses proposed in some previous studies that: (1) Moghara is about 18-17 Ma, approximately the same age as the Hiwegi fauna from Rusinga Island (Kenya); (2) Moghara is slightly older than Gebel Zelten (Libya) (17-15 Ma); and (3) the cercopithecoid tooth presently identified as Victoriapithecus sp. from Napak V (ca. 19 Ma) is currently the oldest known record of a fossil Old World monkey, followed by P. tandyi from Moghara (Egypt) (18-17 Ma) and Prohylobates sp. from Buluk (Kenya) (>17.2 Ma), P. simonsi from Gebel Zelten (Libya) (ca. 17-15 Ma), and V. macinnesi from Maboko (Kenya) (ca. 16-14.7 Ma).
Age Determination by Skeleton↗
Taxonomy and phylogenetic relationships of early Miocene catarrhines from Sihong, China.
Paleontological investigations at sites in Sihong County, Jiangsu Province, China since 1981 have yielded a sizeable collection of previously undescribed fossil catarrhines from the Xiacaowan Formation. The associated vertebrate fauna indicates a late early Miocene age (correlating with MN 4, late Orleanian of Europe, approximately 17-18 Ma), which establishes the Sihong primates as the earliest known catarrhines from Eurasia. The fossil primates are assigned to two species: Dionysopithecus shuangouensis Li, 1978 and Platodontopithecus jianghuaiensis Gu & Lin, 1983. Although the new material from Sihong consists mainly of isolated teeth, it does provide important new information on the anatomy of Dionysopithecus and Platodontopithecus that helps to clarify their phylogenetic and taxonomic status. Previous studies have suggested that the Sihong catarrhines might be closely related to the proconsulids from the early Miocene of East Africa. However, with more extensive material available for comparison, the Sihong primates can now be shown to share a number of key derived features with pliopithecids. This new evidence helps to resolve a longstanding problem concerning the origins of the Pliopithecidae. It was previously considered that specialized pliopithecids migrated into Europe during MN 5, originating from an unknown antecedent and location in Africa. Recognition that the Sihong primates have affinities with pliopithecids, but are more primitive, suggests that the initial differentiation and diversification of the clade may have taken place in Asia rather than Africa. The earliest Eurasian catarrhines probably migrated into tropical Asia as part of a major faunal interchange with Africa that occurred during MN 3.
Animals↗
The influence of life history and diet on the distribution of catarrhine primates during the Pleistocene in eastern Asia.
Environmental changes during the Pleistocene in eastern Asia had profound impacts on the distributions of mammalian groups. Critical for many mammals were the southward latitudinal shifts of the tropical and subtropical vegetational zones, and decreases in the areas of these zones. Examination of the responses of members of a single clade, the Catarrhini, indicates that the main catarrhine genera of eastern Asia responded individually to the environmental changes in the Pleistocene. These responses were influenced by the life history parameters and diets of the genera involved. Those animals (macaques, langurs) with shorter gestation times, shorter weaning periods, shorter interbirth intervals, higher intrinsic rates of increase of population, and abilities to survive on a wider variety of vegetation in seasonal habitats were less adversely affected than those (gibbons, orangutans and the giant extinct hominoid, Gigantopithecus) with more protracted reproductive schedules, lower intrinsic rates of population increase and preferences for the higher quality foods (especially ripe fruits) of less seasonal environments. Hominids, while displaying "hyper-ape" life history parameters, increasingly overcame the constraints of these parameters through extrasomatic means not available to other catarrhines. This ability made possible their colonization, by the Late Pleistocene, of highly seasonal habitats such as tundra, which were off-limits to non-culture-bearing catarrhines.
Animals↗
Estimating missing data: an iterative regression approach.
The problem of missing data is common in all fields of science. Various methods of estimating missing values in a dataset exist, such as deletion of cases, insertion of sample mean, and linear regression. Each approach presents problems inherent in the method itself or in the nature of the pattern of missing data. We report a method that (1) is more general in application and (2) provides better estimates than traditional approaches, such as one-step regression. The model is general in that it may be applied to singular matrices, such as small datasets or those that contain dummy or index variables. The strength of the model is that it builds a regression equation iteratively, using a bootstrap method. The precision of the regressed estimates of a variable increases as regressed estimates of the predictor variables improve. We illustrate this method with a set of measurements of European Upper Paleolithic and Mesolithic human postcranial remains, as well as a set of primate anthropometric data. First, simulation tests using the primate data set involved randomly turning 20% of the values to "missing". In each case, the first iteration produced significantly better estimates than other estimating techniques. Second, we applied our method to the incomplete set of human postcranial measurements. MISDAT estimates always perform better than replacement of missing data by means and better than classical multiple regression. As with classical multiple regression, MISDAT performs when squared multiple correlation values approach the reliability of the measurement to be estimated, e.g., above about 0. 8.
Animals↗
Paleoenvironmental reconstruction of middle Miocene paleosols bearing Kenyapithecus and Victoriapithecus, Nyakach Formation, southwestern Kenya.
Paleosols in the middle Miocene (15 Ma) Nyakach Formation at Kaimogool, near Sondu, southwestern Kenya have yielded specimens of the early cercopithecoid Victoriapithecus macinnesi and the early kenyapithecine Kenyapithecus africanus, and can be used as evidence for the environmental mosaic occupied by these primates. Five distinct types of paleosols (pedotypes) are recognized in the Nyakach Formation section at Kaimogool South. The most common paleosols are reddish brown, silty calcareous profiles with blocky structure and large root traces (Ratong pedotype) which are interpreted as soils of well-drained, dry bushland or thicket (nyika). Weakly developed paleosols associated with paleochannels (Dhero pedotype) represent wooded grassland early in the ecological succession from streamside flooding. One of these paleosols has yielded a fossil flora of grasses and small-leaved dicots like those of modern semi-arid wooded grassland. Crumb structured, calcareous paleosols with iron-manganese nodules (Yom pedotype) are interpreted to represent seasonally waterlogged, wooded grassland (dambo or vlei). Thick, red clayey, calcareous paleosols with blocky ped structure and large root traces (Tut pedotype) are interpreted as soils of well-drained dry woodland. Other blocky-structured, gray to brown calcareous paleosols with iron-manganese nodules (Chido pedotype) are interpreted as soils of seasonally waterlogged, riparian dry woodland. Fossil soils, plants and gastropods are evidence of an unusually dry (300-500 mm mean annual precipitation) habitat for apes, consisting of a vegetational mosaic dominated by dry woodland, bushland and thickets with few areas of seasonally waterlogged grassland. Fossils of V. macinnesi are rare from Nyakach, but were found in paleosols representative of bushland and thicket habitats (Ratong). Fossils of the ape K. africanus were found within paleosols indicative of dry woodland (Tut). Other paleosol types representative of seasonally dry dambo grassland (Yom), colonizing grassland (Dhero) or riparian woodland (Chido) are also represented, but have not yet produced primate fossils.
Animals↗
Enamel hypoplasia in the deciduous teeth of early Miocene catarrhines: evidence of perinatal physiological stress.
Enamel hypoplasia (EH) is a deficiency in enamel thickness due to physiological insults that compromise ameloblast function during the secretory phase of amelogenesis. The prevalence of EH in the deciduous teeth of nonhuman primates is largely unknown. One exception is the recent discovery of EH in the deciduous teeth of extant great apes which exhibit significant differences in prevalence between genera (Lukacs, 1999 a, 2000 a, Am. J. phys. Anthrop.110, 351-363). EH in deciduous teeth of other primates, living and fossil, remain undocumented. This communication describes a "plane form" type of EH known as localized hypoplasia of primary canines (LHPC) (Skinner, 1986 a, Am. J. phys. Anthrop.69, 59-69) in early Miocene catarrhines from Kenya. Specimens were examined macroscopically, with a 10x hand lens and with a variable power (10-30x) binocular microscope. Fédération Dentaire International (FDI)/Defects of Dental Enamel (DDE) standards were employed in recognition and recording of enamel defects (Fédération Dentaire International, 1982, Int. Dent. J.32, 159-167; Clarkson, 1989, Adv. Dental Res.3, 104-109). Size, shape and location of defects were measured and recorded on an outline drawing of the tooth crown. The Kenya National Museum study sample includes six genera of early Miocene catarrhines (n=66 specimens, with n=80 teeth). Seven deciduous teeth were afflicted with EH, yielding an overall prevalence of 8.75%. Two taxa, Kalepithecus (n=1 deciduous canine) and Proconsul (n=3 deciduous canines), were affected with LHPC. Expression of LHPC in fossil catarrhines is consistent with the expression of EH observed in skeletal samples of extant great apes. This report establishes an approximately 17-23 Ma antiquity for EH among early catarrhines and suggests that the neonatal stage of ontogenetic development was sufficiently stressful physiologically to produce disruption in amelogenesis. These physiological stresses impacted neonates of fossil taxa with a wide range of adult body sizes, from large-bodied Proconsul major ( approximately 75 kg) to one of the smaller-bodied catarrhines, Kalepithecus ( approximately 5 kg).
Animals↗
A new middle Miocene pliopithecid from Sant Quirze, northern Spain.
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Animals↗
Prion protein gene variation among primates.
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Amino Acid Sequence↗
Origin and phylogenetic distribution of Alu DNA repeats: irreversible events in the evolution of primates.
Over the past 60 million years, or so, approximately one million copies of Alu DNA repeats have accumulated in the genome of primates, in what appears to be an ongoing process. We determined the phylogenetic distribution of specific Alu (and other) DNA repeats in the genome of several primates: human, chimpanzee, gorilla, orangutan, baboon, rhesus, and macaque. At the population level studied, the majority of the repeats was found to be fixed in the primate species. Our data suggest that new Alu elements arise in unique, irreversible events, in a mechanism that seems to preclude precise excision and loss. The same insertions did not arise independently in two species. Once inserted and genetically fixed, the DNA elements are retained in all descendant lineages. The irreversible expansion of Alu s introduces a vector of time into the evolutionary process, and provides realistic (rather than statistical) answers to questions on phylogenies. In contrast to point mutations, the present distribution of individual Alu s is congruent with just one phylogeny. We submit that only irreversible and taxonomically relevant events are at the molecular basis of evolution. Most point mutations do not belong to this category.
Alu Elements↗
Alu-mediated phylogenetic novelties in gene regulation and development.
Differential gene expression lies at the heart of biology and is responsible for all developmental processes, including the growth and differentiation of cells. Perhaps even speciation could be defined as a change in differential gene expression over evolutionary time. The present work is a phylogenetic study of four Alu elements known to have gene regulatory functions in the human. The four elements have been shown to regulate the parathyroid hormone (PTH) gene via a negative calcium-response element, the hematopoietic cell-specific FcepsilonRI-gamma receptor gene via a cis-acting positive/negative regulatory element, the CNS-specific nicotinic acetylcholine receptor alpha3 gene via a cis-acting positive/negative control element, and the T-cell-specific CD8alpha gene via a complex transcriptional regulator. The four Alu elements that impact differential gene expression were found to be differentially distributed among seven primate species (human, chimpanzee, gorilla, orangutan, baboon, rhesus, and macaque) in a way that is congruent with an accepted phylogeny of these species. The results establish a link between gene regulation and the divergence of primates. This evolutionary variation in gene regulation also suggests a novel experimental system to study the very complex transcriptional regulation of gene expression, by studying side-by-side the regulation of the same gene from two primate species that differ in the cis-acting regulatory elements of the gene.
Alu Elements↗
HERV-H endogenous retroviruses: presence in the New World branch but amplification in the Old World primate lineage.
The evolutionary origin and age of the HERV-H family of human endogenous retrovirus-like sequences was investigated in this study. HERV-H elements exist in approximately 900 partially deleted copies and 50-100 more intact forms in humans and Old World monkeys. However, their possible presence in more divergent species is unknown. We have isolated a 1.6-kb genomic DNA segment from the New World monkey marmoset that had been PCR amplified using human HERV-H primers. DNA and protein comparisons and database searches indicate that this marmoset clone is more closely related to human HERV-H elements than to any other sequence, indicating that HERV-H-related sequences do exist in New World monkeys. In contrast to the high copy numbers of deleted elements in Old World primates. Southern blot analysis shows that such elements are present in less than 50 copies in two different species of New World monkey. To estimate evolutionary ages of the common deleted form of the element, a selected DNA segment from the pol region was compared from multiple human HERV-H elements. This comparison suggests that many HERV-H elements of the abundant deleted subfamily integrated approximately 30-35 million years ago. Very similar percentage divergence values between 5' and 3' long terminal repeats of individual elements of the deleted subfamily also suggest that these elements are close in age. These results indicate that HERV-H elements first appeared in the germline prior to the New World/Old World divergence over 40 million years ago. Interestingly, they remained in low numbers in the New World branch while a subfamily underwent a major amplification in Old World primates before the time of divergence of hominoids from Old World monkeys.
Animals↗
Human and simian adenoviruses: phylogenetic inferences from analysis of VA RNA genes.
Adenovirus VA RNA genes have primary sequence constraints due to internal promoter regions and a high degree of secondary structure in the RNA product. To determine the relationships between human and simian adenoviruses, the VA RNA genes of several primate adenoviruses were characterized and compared to those sequences already published. Human adenoviruses of subgenera A, B:2, and F have only one VA RNA gene, whereas human adenoviruses of subgenera B:1, C, D, and E have two. The genomes of 12 monkey adenoviruses were found to have only one VA RNA gene, whereas the genomes of six representative chimpanzee adenoviruses were each found to have two VA RNA genes. Phylogenetic analysis of representative VA RNA gene sequences individually, irrespective of their strain of origin or partnering VA RNA gene, gave the following inferences. (1) The single VA RNA genes of human adenovirus subgenera A and F are most closely related to those of monkey adenoviruses. (2) The VA RNAI genes of human adenoviruses in subgenera B:1, D, and E, and also the single VA RNA genes of subgenus B:2 probably diverged from a common ancestral VA RNA gene. (3) This ancestral gene most likely reduplicated to give the precursor of all VA RNAII genes, the evidence for which has been almost totally lost in subgenus B:2 adenoviruses. (4) The two VA RNA genes of human subgenus C adenoviruses are relatively distant from each other phylogenetically. Since the Ad2 and Ad5 VA RNAI genes have a higher identity to the single VA RNA gene of SAV13 (SV36) than to those of any of the other human adenoviruses, these genes may have entered the human subgenus C adenovirus genome by substitution involving recombination with a simian adenovirus. The results of this study suggest that a renewed appraisal of VA RNA function in adenoviruses other than Ad2 and Ad5 may be necessary.
Adenoviruses, Human↗
Isolation and partial characterization of a lentivirus from talapoin monkeys (Myopithecus talapoin).
We have identified a novel lentivirus prevalent in talapoin monkeys (Myopithecus talapoin), extending previous observations of human immunodeficiency virus-1 cross-reactive antibodies in the serum of these monkeys. We obtained a virus isolate from one of three seropositive monkeys initially available to us. The virus was tentatively named simian immunodeficiency virus from talapoin monkeys (SIVtal). Despite the difficulty of isolating this virus, it was readily passed between monkeys in captivity through unknown routes of transmission. The virus could be propagated for short terms in peripheral blood mononuclear cells of talapoin monkeys but not in human peripheral blood mononuclear cells or human T cell lines. The propagated virus was used to infect a naive talapoin monkey, four rhesus macaques (M. mulatta), and two cynomolgus macaques (M. fascicularis). All animals seroconverted and virus could be reisolated during a short period after experimental infection. A survey of SIVtal-infected captive talapoin monkeys revealed a relative decrease in CD4(+) cell numbers in chronically (>2 years) infected animals. No other signs of immunodeficiency were observed in any of the infected animals. PCR amplification followed by DNA sequencing of two fragments of the polymerase gene revealed that SIVtal is different from the presently known lentiviruses and perhaps most related to the SIV from Sykes monkeys.
Animals↗
A novel type D simian retrovirus naturally infecting the Indian Hanuman langur (Semnopithecus entellus).
As a simian species, the langurs are not known to harbor simian retroviruses, except for one report on a simian Type D endogenous retrovirus from the spectacled langur (Trachypithecus obscurus) from Malaysia. The present report describes for the first time natural infection of the common Hanuman langur (Semnopithecus entellus) from India by a novel simian retrovirus (SRV). The new SRV is phylogenetically related to but distinct from the three molecularly characterized serotypes, SRV 1-3, of the five known serotypes of SRVs, based on sequence analyses from the 3'orf and env regions of the viral genome. The novel SRV isolated from the Indian Hanuman langur is provisionally named SRV-6.
Amino Acid Sequence↗
The common marmoset as an animal model for vitamin D-dependent rickets, type II.
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Alkaline Phosphatase↗
Herpesvirus HVMA: a new representative in the group of the EBV-like B-lymphotropic herpesviruses of primates.
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Animals↗