Anatomical definition and modelling.
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Biomedical Engineering↗
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A method of measuring three-dimensional scapular attitudes using the optotrak probing system.
OBJECTIVE: To develop a method to obtain accurate three-dimensional scapular attitudes and to assess their concurrent validity and reliability. STUDY DESIGN: In this methodological study, the three-dimensional scapular attitudes were calculated in degrees, using a rotation matrix (cyclic Cardanic sequence), from spatial coordinates obtained with the probing of three non colinear landmarks first on an anatomical model and second on a healthy subject. BACKGROUND: Although abnormal movement of the scapula is related to shoulder impingement syndrome, it is not clearly understood whether or not scapular motion impairment is a predisposing factor. Characterization of three-dimensional scapular attitudes in planes and at joint angles for which sub-acromial impingement is more likely to occur is not known. METHODS: The Optotrak probing system was used. An anatomical model of the scapula was built and allowed us to impose scapular attitudes of known direction and magnitude. A local coordinate reference system was defined with three non colinear anatomical landmarks to assess accuracy and concurrent validity of the probing method with fixed markers. Axial rotation angles were calculated from a rotation matrix using a cyclic Cardanic sequence of rotations. The same three non colinear body landmarks were digitized on one healthy subject and the three dimensional scapular attitudes obtained were compared between sessions in order to assess the reliability. RESULTS AND CONCLUSIONS: The measure of three dimensional scapular attitudes calculated from data using the Optotrak probing system was accurate with means of the differences between imposed and calculated rotation angles ranging from 1.5 degrees to 4.2 degrees. Greatest variations were observed around the third axis of the Cardanic sequence associated with posterior-anterior transverse rotations. The mean difference between the Optotrak probing system method and fixed markers was 1.73 degrees showing a good concurrent validity. Differences between the two methods were generally very low for one and two direction displacements and the largest discrepancies were observed for imposed displacements combining movement about the three axes. The between sessions variation of three dimensional scapular attitudes was less than 10% for most of the arm positions adopted by a healthy subject suggesting a good reliability. The Optotrak probing system used with a standardized protocol lead to accurate, valid and reliable measures of scapular attitudes. RELEVANCE: Although abnormal range of motion of the scapula is often related to shoulder pathologies, reliable outcome measures to quantify three-dimensional scapular motion on subjects are not available. It is important to establish a standardized protocol to characterize three-dimensional scapular motion on subjects using a method for which the accuracy and validity are known. The method used in the present study has provided such a protocol and will now allow to verify to what extent, scapular motion impairment is linked to the development of specific shoulder pathologies.
Biomechanical Phenomena↗
The DaVinci Group: a second modern Ophthalmotrope.
A group of undergraduate students at the University of Connecticut Biomedical Engineering Program has formed a "club" in order to more fully understand and educate themselves in modeling anatomical processes. This group is called the DaVinci Robot or DaVinci Group. Experiments to mechanically model the six extraocular muscles of the eye have been performed, each meeting little success. While researching methods that would lead to better success, the concept of the Ophthalmotrope was discovered. The Ophthalmotrope is a mechanical visual aide used in teaching the function of the extraocular muscles, prevalent in the mid 1800's. The Group decided to study this device and ultimately decided to build one. The paper presented here discusses our third experiment, currently under investigation, that is, to build an Opthalmotrope. Difficulties with this task are lack of any information with regard to how to construct this device. Presented are descriptions of the Group's initial experiments and research conducted into the construction of the Ophthalmotrpe. In the main body of the presented paper is a description of how the DaVinci Group Ophthalmotrope is constructed. Concluding is a discussion of the progress of the construction of the Ophthalmotrope along with a brief listing of research conducted in order to build the device.
Biomedical Engineering↗
Informatics in Radiology (infoRAD): three-dimensional atlas of the brain anatomy and vasculature.
Of the existing atlases of the brain anatomy and cerebrovasculature, none integrates the anatomy and vasculature by providing for direct manipulation of three-dimensional (3D) cerebral models. An atlas-based application was developed in four steps: (a) construction of 3D anatomic models, (b) construction of 3D vascular models, (c) interactive spatial coregistration of the anatomic and vascular models, and (d) development of functionality and a user interface for the application. Three-dimensional anatomic models were imported from an electronic brain atlas database derived from classic print atlases. A novel vascular modeling technique was developed and applied to create a vascular atlas from magnetic resonance angiographic data. The use of 3D polygonal models allows smooth navigation (rotation, zooming, panning) and interactive labeling of anatomic structures and vascular segments. This application enables the user to examine 3D anatomic structures and 3D cerebral vasculature and to gain a better understanding of the relationships between the two. The combined anatomic-vascular atlas is a user-friendly neuroeducational tool that is useful for medical students and neuroscience researchers as well as for educators in preparing teaching materials.
Brain↗
A flexible and extensible object-oriented 3D architecture: application in the development of virtual anatomy lessons.
"Anatomic VisualizeR" represents the first application to be developed using a 3D architectural framework created at the University of California, San Diego, School of Medicine. This application combines 3D anatomic models (based on the Visible Human dataset) with supporting 2D media (e.g., diagnostic imagery, surgical videos, etc.) to establish a comprehensive learning environment for anatomy. "Guided lessons" are being created to address complex curricular and learning objectives. Faculty expertise is represented in these preconfigured lessons, in part through the specification of appropriate content and the incorporation of activities to enhance visualization. These lessons are an intellectual framework which ensures that clinically-relevant issues and ancillary learning opportunities are available. The curricular exercises are non-sequential and can be interrupted at any time; users are encouraged to freely explore the environment. At the core of Anatomic VisualizeR's object-oriented architecture is the ability to identify, access, view, and manipulate heterogeneous content. The capacity to query a database gateway to retrieve specified resources has been built into the application. Encapsulation of individual elements to form 3D display objects ("blocks") enables Anatomic VisualizeR to efficiently manage 3D models, 2D images, text, sound, and video. The "block" paradigm also allows Anatomic VisualizeR to associate contextually appropriate display characteristics and behaviors with the various content elements. For example, the anatomic model block provides the capability to "link" and "unlink" the anatomic models and to alter their transparencies. The anatomic models can be displayed concurrently with other blocks to facilitate structural comparisons. Anatomic VisualizeR marks a major milestone in our developmental efforts. While lessons and database content are still not complete, we are confident that it will become the first tangible realization of our vision.
Anatomy↗
The construction of an anatomically based model of the human ventricular conduction system.
The ventricular conduction system is a complicated network of specialized muscle cells responsible for the transmission of electrical activity between the atria and the ventricles of the human heart. It has been the focus of numerous electrical and anatomical studies at both the microscopic and macroscopic levels. An understanding of its behavior at both levels is considered important, because it is primarily responsible for the spread of excitation in the ventricles. Previous computer models have been very simple ones that have been primarily adjuncts to models of the ventricles. This paper describes a strategy for the construction of conduction system models which is based on real microscopic and macroscopic features, although the model still is much simpler than reality. The model contains almost 35,000 individual cylindrical elements, each of whose physical dimensions approximate unit bundles of Purkinje and atrioventricular nodal cells. The model, whose physical appearance closely resembles that of the conduction system, was generated from limited anatomical data in less than 2 min CPU time on an IBM 3090 at the Cornell National Supercomputer Facility.
Atrioventricular Node↗
Mathematical model for the postnatal growth of the human lung.
Theoretical particle deposition studies for children and youths in practical health physics or medical aerosol therapy require detailed information on alterations of anatomical as well as physiological parameters during postnatal growth. Based on the commonly used anatomical model A of Weibel, assuming regular dichotomy, for an adult human lung, a mathematical model was developed for the calculation of airway parameters, such as geometrical dimensions and number of airways as functions of age. Sometimes widely scattered experimental data obtained by different authors were fitted to analytical functions by a multiregressional procedure. Due to the lack of these data for most of the generations of the anatomical model, theoretical considerations had to be applied. For changes of respiration parameters with progressing age, e.g., tidal volume or respiratory frequency, also experimental data were used. The results of these calculations can then serve as a base for the determination of deposition probabilities in different regions of the human respiratory tract.
Adolescent↗
A probabilistic simulation model to assist the localization of nerve lesions.
I present a formal, mathematical specification of a probabilistic expert system to assist the localization of nerve lesions. The program is based on an anatomical model of the peripheral nervous system of the human upper limb. The simulation model defines a joint probability distribution over the states of nerves and clinical manifestations. A simple, general-purpose heuristic algorithm is used to approximate conditional probabilities of interest. It is shown how an upper bound on the expected approximation error can be measured experimentally; this upper bound is 0.05 for the system described here, although the bound can be made arbitrarily small by expending more computational effort. The expert system is compared with the nearest-neighbour statistical classification rule on two databases of 26 and 25 cases respectively. The expert system makes fewer errors, although the observed difference does not reach statistical significance. Possible future refinements to the model are explored, and the advantages of specifying expert systems formally are discussed.
Algorithms↗
Physical stresses at the air-wall interface of the human nasal cavity during breathing.
The nose is the front line defender of the respiratory system and is rich with mechanoreceptors, thermoreceptors, and nerve endings. A time-dependent computational model of transport through nasal models of a healthy human has been used to analyze the fields of physical stresses that may develop at the air-wall interface of the nasal mucosa. Simulations during quiet breathing revealed wall shear stresses as high as 0.3 Pa in the noselike model and 1.5 Pa in the anatomical model. These values are of the same order of those known to exist in uniform large arteries. The distribution of temperature near the nasal wall at peak inspiration is similar to that of wall shear stresses. The lowest temperatures occur in the vicinity of high stresses due to the narrow passageway in these locations. Time and spatial gradients of these stresses may have functional effects on nasal sensation of airflow and may play a role in the well-being of nasal breathing.
Biomechanical Phenomena↗
Anatomically accurate, finite model eye for optical modeling.
There is a need for a schematic eye that models vision accurately under various conditions such as refractive surgical procedures, contact lens and spectacle wear, and near vision. Here we propose a new model eye close to anatomical, biometric, and optical realities. This is a finite model with four aspheric refracting surfaces and a gradient-index lens. It has an equivalent power of 60.35 D and an axial length of 23.95 mm. The new model eye provides spherical aberration values within the limits of empirical results and predicts chromatic aberration for wavelengths between 380 and 750 nm. It provides a model for calculating optical transfer functions and predicting optical performance of the eye.
Biometry↗
Three dimensional electromechanical model of porcine heart with penetrating wound injury.
The aim of this study is development a prototype computational model of the pig heart that can be used to predict physiological responses to a penetrating wound injury. The pig has been chosen for this model studies because it shares many anatomical similarities with humans. Three-dimensional cubic Hermite finite element meshes based on detailed measurements of porcine anatomy combined into an integrated anatomic model. The pig ventricular model includes detailed left and right ventricular geometry and myofiber and laminar sheet orientations throughout the mesh. The cardiac mesh was refined and monodomain equations for action potential propagation solved using well-established collocation-Galerkin finite element methods. The membrane kinetic equations for the action potential model was based on detailed cellular models of transmembrane ionic fluxes and intracellular calcium fluxes in canine ventricular myocytes and human atrial myocytes. We modified the anisotropic myocardial conductivity tensor on the endocardial surface of the ventricles by making use of a surface model fitted to measured of Purkinje fiber network anatomy. The mechanical model compute regional three-dimensional stress and strain distributions using anisotropic constitutive laws referred to local material coordinate axes defined by local myofiber and laminar sheet orientations. Passive myocardial mechanics modeled using exponential orthotropic strain energy functions. Active systolic myocardial stresses computed from a multi-scale model that uses crossbridge theory to predict calcium-activated sarcomere length- and velocity-dependent tension filament tension. Since the electrical and mechanical models use a common finite element mesh as the parent parametric framework and both models are solved within our custom finite element package, it is straightforward to couple these models, as we have recently done for a model of coupled ventricular electromechanics. We apply the coupled electromechanical model to predict alterations in regional diastolic and systolic wall mechanics associated with rhythm disturbances and possible arrhythmias with decreased blood volume, tamponade, myocardial injury, and regional ischemia caused by a penetrating wound.
Animals↗
Generation of an anatomically based geometric coronary model.
A discrete anatomically accurate finite element model of the largest six generations of the coronary arterial network is developed. Using a previously developed anatomically accurate model of ventricular geometry the boundaries of the coronary mesh are defined from measured epicardial coronaries. Network topology is then generated stochastically from published anatomical data. Spatial information is added to this topological data using an avoidance algorithm accounting for global network geometry and optimal local branch angle properties. The generated vessel lengths, radii and connectivity are consistent with the published studies and a relativity even spatial distribution of vessels within the ventricular mesh is achieved. The local finite element coordinates of the coronary nodes within the ventricular mesh are calculated such that the coronary geometry can be recalculated within a deformed ventricular mesh.
Biomedical Engineering↗
RF dosimetry: a comparison between power absorption of female and male numerical models from 0.1 to 4 ghz.
Realistic numerical models of human subjects and their surrounding environment represent the basic points of radiofrequency (RF) electromagnetic dosimetry. This also involves differentiating the human models in men and women, possibly with different body shapes and postures. In this context, the aims of this paper are, firstly, to propose a female dielectric anatomical model (fDAM) and, secondly, to compare the power absorption distributions of a male and a female model from 0.1 to 4 GHz. For realizing the fDAM, a magnetic resonance imaging tomographer to acquire images and a recent technique which avoids the discrete segmentation of body tissues into different types have been used. Simulations have been performed with the FDTD method by using a novel filtering-based subgridding algorithm. The latter is applied here for the first time to dosimetry, allowing an abrupt mesh refinement by a factor of up to 7. The results show that the whole-body-averaged specific absorption rate (WBA-SAR) of the female model is higher than that of the male counterpart, mainly because of a thicker subcutaneous fat layer. In contrast, the maximum averaged SAR over 1 g (1gA-SAR) and 10 g (10gA-SAR) does not depend on gender, because it occurs in regions where no subcutaneous fat layer is present.
Absorption↗
Dynamic generation of surgery specific simulators -- a feasibility study.
Most of the current surgical simulators rely on preset anatomical virtual environments (VE). The functionality of a simulator is typically fixed to anatomy-based specific tasks. This rigid design principle makes it difficult to reuse an existing simulator for different surgeries. It also makes it difficult to simulate procedures for specific patients, since their anatomical features or anomalies cannot be easily replaced in the VE. In this paper, we demonstrate the reusability of a modular skill-based simulator, LapSkills, which allows dynamic generation of surgery-specific simulations. Task and instrument modules are easily reused from LapSkills and the three-dimensional VE can be replaced with other anatomical models. We build a nephrectomy simulation by reusing the simulated vessels and the clipping and cutting task modules from LapSkills. The VE of the kidney is generated with our anatomical model generation tools and then inserted into the simulation (while preserving the established tasks and evaluation metrics). An important benefit for the created surgery and patient-specific simulations is that reused components remain validated. We plan to use this faster development process to generate a simulation library containing a wide variety of laparoscopic surgical simulations. Incorporating the simulations into surgical training programs will help collect data for validating them.
Computer Simulation↗
Exploring the geometric and mechanical characteristics of the spine musculature to provide rotational stiffness to two spine joints in the neutral posture.
Joint stiffness is inherently linked to both performance and injury. Muscular activation is the predominant provider of stiffness to the lumbar spine, and is essential to ensure optimal spine performance. The purpose of the current paper was to examine the potential of the trunk muscles to provide rotational joint stiffness at two spine joints in the neutral posture, and to demonstrate the sensitivity of this stiffening potential to various muscle orientation and stiffness assumptions. Two separate anatomical models were utilized to analyze the muscular contributions to the 3-dimensional rotational stiffness about each of the L1-L2 and L4-L5 spine joints. Total muscular stiffening potentials, for both joints in each anatomical model, were found to be highest about the global lateral bend axis, and lowest about the global axial twist axis. The stiffening potential was found to depend highly on both the assumed muscle stiffness coefficient (q value) and the moment arm of the muscle about the joint in question. Analyses of spine stiffness were found to be greatly affected by both the anatomical representation of the surrounding musculature and the selection of the q value in the determination of muscular stiffness. Inappropriate choices of either of these factors could lead to errors in stiffness and subsequently stability estimates, and in the interpretation and possible clinical recommendations stemming from such estimates.
Biomechanical Phenomena↗
A three-dimensional virtual environment for modeling mechanical cardiopulmonary interactions.
We have developed a real-time computer system for modeling mechanical physiological behavior in an interactive, 3-D virtual environment. Such an environment can be used to facilitate exploration of cardiopulmonary physiology, particularly in situations that are difficult to reproduce clinically. We integrate 3-D deformable body dynamics with new, formal models of (scalar) cardiorespiratory physiology, associating the scalar physiological variables and parameters with the corresponding 3-D anatomy. Our framework enables us to drive a high-dimensional system (the 3-D anatomical models) from one with fewer parameters (the scalar physiological models) because of the nature of the domain and our intended application. Our approach is amenable to modeling patient-specific circumstances in two ways. First, using CT scan data, we apply semi-automatic methods for extracting and reconstructing the anatomy to use in our simulations. Second, our scalar physiological models are defined in terms of clinically measurable, patient-specific parameters. This paper describes our approach, problems we have encountered and a sample of results showing normal breathing and acute effects of pneumothoraces.
Computer Simulation↗
Intra-aortic septation: experimental model for "anatomical" correction of transposition of the great vessels.
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Animals↗
Localization of intramural necrotic regions using electrocardiographic imaging.
Recent studies have demonstrated that electrocardiographic imaging (ECGI) is a novel noninvasive modality for exploring the spread of electrical activation within the ventricular wall. In this study, our goal was to explore the ability of ECGI in reconstructing epicardial potentials and electrograms in the ventricles damaged by localized necroses (<2 cm2). An anatomical model of the human ventricular myocardium was used to simulate activation sequences initiated at 428 epicardial and endocardial pacing sites distributed over the right ventricular and left ventricular free walls. From these realistic sequences, we simulated extracardiac potentials at epicardial (202 sites) and torso surfaces (352 sites) using boundary element model of the human torso. ECGI in terms of the L-curve was applied to compute epicardial potentials and unipolar electrograms (202 sites). Inversely computed electrograms correlated well with those simulated by an anatomical model (r > 0.9 at 68% of sites). Specifically, ECGI accurately reconstructed the following features that have been observed during measurements on the exposed canine hearts: (a) an epicardial potential pattern with a central minimum and two maxima, with the minimum positioned above the pacing site; (b) a complete transient loss of one of the positive areas in the epicardial potential pattern when the necrosis was located subepicardially; and (c) a transient gap in the expanding positive areas of the epicardial potential pattern when the necrosis was located intramurally or subendocardially. Findings of our study indicate that ECGI provides detailed reconstruction of patterns of myocardial activation in the presence of localized necroses and may be useful in the assessment of arrhythmogenic substrate in the clinical setting.
Animals↗