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PubMed1981

A modified technique for the detection of hepatitis B virus-specific DNA polymerase.

A modified and improved technique for the detection of hepatitis B virus-specific DNA polymerase activity is described. DNA polymerase is released from Dane particles by mixing samples with the detergent Nonidet P-40 and beta-mercaptoethanol. After incubation of pretreated samples with a reaction mixture containing tritiated thymidine-methyl-5'-triphosphate (3H-TTP), DNA is precipitated onto a trichloroacetic acid (TCA)-treated paper. Unincorporated 3H-TTP is then chromatographically eluted with a 5% TCA solution and precipitated counts are determined. A sample is considered positive for DNA polymerase if the incorporated counts are significantly higher than the counts of a group of negative control samples. The modifications include pretreatment of the paper with TCA, chromatographic elution of unincorporated 3H-TTP with TCA solution, prefiltration of the sample through bacteriological filters, and use of sound statistical methods for evaluation of data. These changes have led to a highly reproducible, reliable and sensitive technique. The coefficient of variation of negative control samples from various test runs was in the range of 2.7-8.5%. A linear relationship between incorporated counts and DNA polymerase concentration was shown. A total of 419 serum samples from asymptomatic HBsAg-carrying blood donors were tested. Twenty-three (5.5%) of these were found to contain detectable DNA polymerase activity. All 23 samples also contained HBeAg.

Chemical Precipitation↗

PubMed2004

Comparative evaluation of digoxin concentrations determined by three assay systems: TDx, IMx and OPUS.

Digoxin concentrations measured by three automated immunoassay systems, i.e. OPUS, TDx and IMx assays, were compared in order to evaluate precision and accuracy performance, and data compatibility. Coefficients of variation for all methods in within-run and between-run precision were less than 10% at weighed-in concentrations of 0.545, 1.090 and 2.180 ng/ml. The accuracy relative to the three weighed-in concentrations ranged from 97% to 123% for all methods. One hundred and three plasma samples from 60 patients receiving digoxin were used to evaluate the data compatibility. Digoxin concentrations measured by the three immunoassay systems correlated well with one another. These results suggest that there are few problems when switching between digoxin assay methods, and that IMx and OPUS are more useful than TDx because they do not require sample pretreatment. The digoxin concentrations of the plasma samples from one patient receiving both digoxin and potassium canrenoate were investigated as a case report. The digoxin concentrations measured by TDx and IMx became higher than those measured by OPUS after starting the combination treatment. In another patient suffering from bilirubinaemia, the digoxin concentrations measured by TDx or IMx were higher than those measured by OPUS. These results suggest that OPUS has a higher specificity for measuring the plasma digoxin concentrations compared with TDx or IMx.

Analysis of Variance↗

PubMed2001

Phase transitions and hydrogen bonding in a bipolar phosphocholine evidenced by calorimetry and vibrational spectroscopy.

As a model for natural archaebacterial bolalipids, we have synthesized omega-hydroxybehenylphosphocholine (HBPC, HO-(CH(2))(22)-OP(O(-)(2))O-(CH(2))(2)-N+(CH(3))(3)) and investigated it, by Fourier-transform infrared and Raman spectroscopy and differential scanning calorimetry, both as fully hydrated dispersions (varying temperature) and as aligned films (varying hydration) in terms of particular structural features predestining such bipolar lipids for their occurrence in extremophilic organisms. The phase behavior of HBPC in dispersions depends on sample pretreatment as it comprises metastabilities in annealed samples. However, main transition proceeds consistently near 81 degrees C. Some (extra) deal of headgroup (phosphate) hydration accompanying a gel-gel phase transition near 66 degrees C appears to precede chain melting. Studies with HBPC films revealed lamellar interdigitated-like solid phases with an extraordinarily strong omega-OH--OPO(-) omega-OH--OPO(-) omega-OH hydrogen-bond pattern formed along both sides of the resulting monolayers. The "clamping" effect inherent to such structures provides a clue to explain the relatively high main-transition temperature of HBPC assemblies.

Adsorption↗

PubMed1995

Low energy ion implantation in polybithiophene: microstructuring and microanalysis.

Low energy ion implantation in polybithiophene (thickness 200 nm) forms a 20 nm thin modified surface layer. Combining surface analysis and electrochemical methods a non destructive depth resolved investigation of the properties of the implanted layer was performed. The composition of the modified layer is dependent on the implanted species: N causes doping, O has a sputtering effect. The modified layer acts as an electronic and ionic barrier as shown by cyclic voltammetry and electron transfer reactions. The effectivity of barrier formation is dependent on the sample pretreatment and the redox state. For reduced samples the redox charge increases for repeated voltammograms (regeneration effect). The according dose dependent band scheme shows an increasing surface resistivity for low doses. At high doses the surface resistivity decreases again due to graphitization. By application of a microstructured mask the polybithiophene was structured within a microm range. Laterally high resolving methods revealed sharp interfaces between implanted and pristine surface ranges. The doping pattern and the electronic properties are localized and do not alter even in an electrolyte. So conducting polymers can be microstructured to give stable structures with changed composition and modified electronic and ionic properties as required for microtechnological applications.

Journal Article↗

PubMed1988

Rapid separation of DNA restriction fragments using capillary electrophoresis.

Open-tube capillary electrophoresis has been applied to the separation of restriction fragments of DNA with a Tris-borate buffer containing 7 M urea and 0.1% sodium dodecyl sulfate. The importance of sample pretreatment and of the injection of heated samples has been demonstrated. In one separation, a DNA restriction fragment mixture from 72 to 23,130 base pairs (DRIgestTM III) (molecular weight range from 4.6.10(4) to 1.5.10(7] has been electrophoresed in 10 min on a column of 15 cm effective length. Over 600,000 plates have been obtained for individual peaks. Several of the peaks have been identified, by spiking slab gel electrophoretically purified components. Other examples of restriction fragment separations are illustrated in this paper. The results of this study when further validated with full characterization of individual species, open up the possibility of rapid restriction enzyme mapping.

DNA Restriction Enzymes↗

PubMed1982

A rapid and precise system for lead determination in whole blood.

The paper describes a heated furnace atomic absorption method for determining lead in whole blood using an automated sample introduction system. It is direct and rapid. No sample pretreatment is required and up to 30 samples per hour can be analyzed. Precision and accuracy data are presented. The system has been applied to both macro (venipuncture) and micro (capillary) samples. The method uses physiologically-bound lead standards to compensate for matrix effects. It has been used in the screening of target populations and for confirming elevated blood lead levels in the California Department of Health Services Childhood Lead Program.

Blood Viscosity↗

PubMed2003

Simultaneous determination of carisoprodol and acetaminophen in an attempted suicide by liquid chromatography-mass spectrometry with positive electrospray ionization.

An adult female ingested a considerable quantity of carisoprodol/acetaminophen tablets, which are not commercially available in Japan, in an attempt to commit suicide. Generally, because of lack of the appreciable ultraviolet absorbance or fluorescence, carisoprodol and its major metabolite meprobamate are determined by gas chromatography or gas chromatography-mass spectrometry. Complicated derivatization is, however, necessary to that methodology. Thus, we investigated the derivatization-free, highly sensitive, and simultaneous determination of carisoprodol, meprobamate, and acetaminophen by means of liquid chromatography-mass spectrometry (LC-MS) with positive electrospray ionization. A semi-micro ODS column was used. Ammonium acetate solution (10mM) and acetonitrile were used as mobile phase at a flow rate of 150 microL/min using gradient elution. MS parameters were as follows: capillary voltage, 3.5 kV; cone voltage, +30 V; extractor voltage, 5 kV; and ion source temperature, 100 degrees C. Urine samples pretreated by Oasis HLB cartridge, or plasma samples deproteinized by adding ice-cold acetonitrile were analyzed by LC-MS. The limits of quantitation for each compound were as follows: 0.50 ng/mL for carisoprodol; 10 ng/mL for acetaminophen; and 1.0 ng/mL for meprobamate. In the present case, carisoprodol and acetaminophen were the only drugs detected. Meprobamate was also found as the metabolite of carisoprodol in both urine and plasma. The plasma levels of carisoprodol, acetaminophen, and meprobamate on arrival were 29.5, 245, and 46.7 microg/mL, respectively. These levels were extremely high compared with therapeutic plasma concentrations. Despite the high plasma concentrations of these drugs, which correspond to fatal levels, the patient survived.

Acetaminophen↗

PubMedDate not supplied

Prevention of corneal keratocyte apoptosis after argon fluoride excimer laser irradiation with the free radical scavenger ubiquinone Q10.

PURPOSE: To assess in vitro the potential of the free radical scavenger ubiquinone Q10 in preventing keratocyte apoptosis after argon fluoride (ArF) excimer laser irradiation. METHODS: Cultured rabbit keratocytes were irradiated at very low single-pulse laser fluences. The cumulative effects generated by three total fluence doses between 12 and 45 mJ/cm2, representative of single-pulse subablative doses during photorefractive keratectomy (PRK) in humans, were evaluated. We employed the following parameters to compare pretreated (10 microM ubiquinone Q10) and untreated samples: 1) number and morphology of living cells by Trypan blue test and ultramicroscopy, respectively; 2) level of free-radical formation assessed by malonaldehyde quantitation; 3) cellular energy level evaluated by ATP assay. RESULTS: Excimer laser irradiation kills cultured keratocytes by inducing apoptosis. The effect increases with the cumulative fluence dose. In the samples pretreated with ubiquinone Q10 there were significantly fewer cumulative apoptotic events than in the untreated ones. Quantitative analysis of malonaldehyde cellular levels suggested this protective action of ubiquinone Q10 was connected with its ability to scavenge laser-generated free radicals. ATP assay also confirmed that it raised cellular energy levels. CONCLUSIONS: The treatment of corneal keratocytes with relatively low concentrations of ubiquinone Q10 can prevent apoptosis after ArF excimer laser irradiation. If these findings are confirmed on human keratocytes this treatment could be usefully exploited in the PRK surgical procedure. That might lead to a reduction in the occurrence of haze and curvature regression triggered by programmed cell death.

Adenosine Triphosphate↗

PubMedDate not supplied

Determination of moisture, starch, protein, and fat in common beans (Phaseolus vulgaris L.) by near infrared spectroscopy.

The presence of moisture, starch, protein, and fat was determined in common beans (Phaseolus vulgaris L.) by near infrared (NIR) spectroscopy without any previous sample pretreatment except grinding. A set of 96 samples was used to calibrate the instrument by modified partial least-squares regression. The following statistical results were achieved: standard error of calibration (SEC) = 0.31 and square correlation coefficient (R2) = 0.96 for moisture; SEC = 0.76 and R2 = 0.92 for starch; SEC = 0.39 and R2 = 0.98 for protein; and SEC = 0.14 and R2 = 0.80 for fat. To validate the calibration, a set of 25 bean samples was used. Standard errors of prediction were 0.39, 0.90, 0.56, and 0.13 for moisture, starch, protein, and fat, respectively, and R2 for the regression of measurements by the reference method versus NIR analysis were 0.94, 0.88, 0.94, and 0.74 for moisture, starch, protein, and fat, respectively. To compare the results obtained for all 4 components of the validation set by NIR spectroscopy with those obtained by the reference methods, linear regression and paired t tests were applied, and the methods did not give significantly different results, P = 0.05.

Calibration↗

PubMed1993

Chlamydia trachomatis infection in a high-risk population: comparison of polymerase chain reaction and cell culture for diagnosis and follow-up.

A study to compare the polymerase chain reaction (PCR) test with the cell culture method in diagnosing urogenital Chlamydia trachomatis infections was performed. From 497 patients (212 women, 285 men) attending an outpatient clinic for sexually transmitted diseases, a total of 814 samples (female patients, cervix and urethra; male patients, urethra) were collected. This total included follow-up samples from 35 women and 35 men positive for C. trachomatis by cell culture and/or PCR test, which were collected 2 weeks after treatment with doxycycline (two 100-mg doses per day for 7 days). The PCR test was performed directly on clinical samples without performing phenol-chloroform extraction and ethanol precipitation of DNA. The prevalence of C. trachomatis as measured by positive cell culture was 64 of 497 (12.9%) for all patients, 31 of 212 (14.6%) for women, and 33 of 285 (11.6%) for men. The prevalences as measured by positive PCR test were 71 of 497 (14.3%), 36 of 212 (17.0%), and 35 of 285 (12.3%), respectively. The sensitivities of the cell culture and the PCR test compared with that of true-positive samples were 77.5 to 78.4% and 99.0 to 100.0%, respectively. Discrepancies between cell culture and the PCR test were found for 23 of 497 patients (4.9%), 19 of 212 females (9.0%), and 4 of 285 males (1.4%). Nineteen pretreatment samples from 19 patients (4 female endocervical, 13 female urethral, and 2 male urethral samples) were cell culture negative and PCR test positive, while 1 pretreatment female endocervical sample was cell culture positive and PCR test negative. The posttreatment samples from all patients were cell culture negative, but the PCR test remained positive for 3 of 70 patients (1 female endocervical and 2 male urethral samples). One of these samples became spontaneously negative in three more weeks. The medical history of the individual patient and the negative PCR tests after treatment for nearly all patients support our hypothesis that the positive PCR test results were clinically relevant for the cell culture-negative but PCR test-positive but PCR test-positive patients of the population studied.

Bacteriological Techniques↗

PubMed2005

Efficient prefractionation of low-abundance proteins in human plasma and construction of a two-dimensional map.

Human plasma is the most clinically valuable specimen, containing not only a dynamic concentration range of protein components, but also several groups of high-abundance proteins that seriously interfere with the detection of low-abundance potential biomarker proteins. To establish a high-throughput method for efficient depletion of high-abundance proteins and subsequent fractionation, prior to molecular analysis of proteins, we explored how coupled immunoaffinity columns, commercially available as multiple affinity removal columns (MARC) and free flow electrophoresis (FFE), could apply to the HUPO plasma proteome project. Here we report identification of proteins and construction of a human plasma 2-DE map devoid of six major abundance proteins (albumin, transferrin, IgG, IgA, haptoglobin, and antitrypsin) using MARC. The proteins were identified by PMF, matching with various internal 2-DE maps, resulting in a total of 144 nonredundant proteins that were identified from 398 spots. Tissue plasminogen activator, usually present at 10-60 ng/mL plasma, was also identified, indicative of a potentially low-abundance biomarker. Comparison of representative 2-D gel images of three ethnic groups (Caucasian, Asian-American, African-American) plasma exhibited minor differences in certain proteins between races and sample pretreatment. To establish a throughput fractionation of plasma samples by FFE, either MARC flow-through fractions or untreated samples of Korean serum were subjected to FFE. After separation of samples on FFE, an aliquot of each fraction was analyzed by 1-D gel, in which MARC separation was a prerequisite for FFE work. Thus, a working scheme of MARC --> FFE --> 1-D PAGE --> 2-D-nanoLC-MS/MS may be considered as a widely applicable standard platform technology for fractionation of complex samples like plasma.

Albumins↗

PubMed1999

Femtomole quantitation of 7-ethyl-10-hydroxycamptothecine (SN-38) in plasma samples by reversed-phase high-performance liquid chromatography.

7-Ethyl-10-hydroxycamptothecine (SN-38) is the active metabolite of the topoisomerase I inhibitor and antineoplastic agent, irinotecan (CPT-11). Here, we present a new and sensitive reversed-phase high-performance liquid chromatographic method for the determination of SN-38 in human plasma samples. Sample pretreatment involves a protein precipitation of 1-mL samples with 2 mL of acetonitrile, followed by a one-step solvent extraction with 5 mL of chloroform, with camptothecine used as internal standard. Chromatographic separation was achieved on an analytical column packed with Hypersil ODS material (100 x 4.6 mm i.d., 5 microm P.S.), and isocratic elution with a mixture of acetonitrile:0.1 M ammonium acetate containing 10 mM tetrabutylammonium sulfate (23:77, v/v), pH 5.3 (hydrochloric acid). The column effluent was monitored at excitation and emission wavelengths of 380 and 556 nm, respectively. The limit of quantitation of the method presented was at the low femtomole level ( approximately 8.4 fmol; equivalent to 5 pg/mL), with the standard curves being linear over nearly three orders of magnitude. Intraassay precision was <9%, while interassay variations were between 2 and 5%. The extraction efficiency was concentration independent and averaged 88.0 +/- 14.3% (mean +/- standard deviation; n = 59). The described method will be used in future studies to assess the extent of enterohepatic recirculation of SN-38 in cancer patients following intravenous CPT-11 treatment.

Antineoplastic Agents, Phytogenic↗

PubMed2005

Simultaneous determination of l- and d-lactic acid in plasma by capillary electrophoresis.

A novel method for simultaneous determination of d- and l-lactic acids in plasma was presented by capillary electrophoresis with photodiode array detection at 195nm. The separation was performed in an uncoated fused-silica capillary. The parameters influencing the resolution and the migration time of lactic acids were optimized. When 150mM phosphate-Tris buffer (pH 7.0) consisting of 220mM 2-hydroxypropyl-beta-cyclodextrin and 0.2mM tetradecyltrimethylammonium bromide was utilized as the running buffer, highly effective chiral separation of d- and l-lactic acids was achieved at about 42min at an effective voltage of -25kV. The resolution of lactic acid enantiomers was >/=1.25. The limits of detection of d- and l-lactic acids in standard solution without any pretreatment were 80 and 50muM (S/N=3), respectively. Sample pretreatment was preceded by protein-removal procedure with acetonitrile. With a pre-concentration procedure by 10 times, the limits of detection of d- and l-lactic acids were 20 and 15muM (S/N=10), respectively. The satisfactory analytical performance of the proposed method was validated.

Animals↗

PubMed2000

Simultaneous determination of inorganic disinfection by-products and the seven standard anions by ion chromatography.

For the first time, an ion chromatographic method for the simultaneous determination of the disinfection by-products bromate, chlorite, chlorate, and the so-called seven standard anions, fluoride, chloride, nitrite, sulfate, bromide, nitrate and orthophosphate is presented. The separation of the ten anions was carried out using a laboratory-made high-capacity anion-exchanger. The high capacity anion-exchanger allowed the direct injection of large sample volumes without any sample pretreatment, even in the case of hard water samples. For quantification of fluoride, chloride, nitrite, sulfate, bromide, nitrate, orthophosphate and chlorate, a conductivity detection method was applied after chemical suppression. The post-column reaction, based on chlorpromazine, was optimized for the determination of chlorite and bromate. The method detection limit for bromate measured in deionized water is 100 ng/l and for chlorite, it is 700 ng/l. In hard drinking water, the method's detection limits are 700 ng/l (bromate) and 3.5 microg/l (chlorite). The method's detection limits for the other eight anions, determined by conductivity detection, are between 100 microg/l (nitrite) and 1.6 mg/l (chlorate).

Anions↗

PubMed1998

Rapid determination of vitamins A and E in serum with surfactant as a diluent by column-switching high-performance liquid chromatography.

The rapid and simple determination of fatty vitamins (vitamins A and E) in serum by high-performance liquid chromatography with a column-switching technique was investigated. The dilution of serum with an aqueous solution containing surfactant and organic solvent and the use of an aqueous solution with organic solvent as a sample pretreatment were an effective means of improving the sample recovery. To prevent sample decomposition during storage, the addition of an antioxidant reagent into the diluent was required. Under the optimal conditions, the relative standard deviation (R.S.D.) values against the standard samples were 1.12% (16.7 I.U./dl), 0.25% (333 I.U./dl) for vitamin A, and 1.02% (0.43 microgram/ml), 0.45% (8.5 micrograms/ml) for vitamin E, respectively. The relative coefficients (r2) between the sample amounts in serum and the peak areas were 1.0000 in the range from 16.7 to 667 I.U./dl (for vitamin A) and 0.9998 from 0.434 to 17.46 micrograms/ml (for vitamin E). The recoveries of vitamins from spiked serums were ca. 100% (vitamin A) and ca. 86% (vitamin E), respectively. By the combination of an on-line deproteination column and diluting solution, the simple and rapid determination of fatty vitamins could be routinely achieved in 18-min intervals.

Chromatography, High Pressure Liquid↗

PubMed1999

A comparison of inductively coupled plasma mass spectrometry with electrothermal atomic absorption spectrophotometry for the determination of trace elements in blood and urine from non occupationally exposed populations.

Quadrupole Inductively coupled plasma mass spectrometric (QICP-MS) and electrothermal atomic absorption spectrophotometric (ETAAS) methods for the determination of Pb and Cd in whole blood and Al, Cd, Co and Ni in urine were compared. Simple sample pretreatments were used for both instrumental techniques. Urine samples were diluted with either Millipore water or dilute HNO3, while blood samples were diluted with a solution containing either 0.14M NH3 or 0.03 M NH3, 0.05% EDTA and 0.05% Triton X-100 in Millipore water. Scandium, yttrium and indium were used as internal standards for ICP-MS measurements and (NH4)2HPO4 as a chemical modifier for the determination of Pb and Cd by ETAAS. For ICP-MS analysis, pneumatic nebulization was used for introduction of urine samples and flow injection for introduction of blood samples. Matrix matched standards were used for all calibrations and methods were validated by analyzing reference materials and samples from external quality assurance programmes. Concentrations of the listed metals were determined in blood and urine samples obtained from a healthy non occupationally exposed population and reference samples, using both instrumental techniques. The study group (n = 90) was randomly selected from a study population (n = 220) recruited from three regions considered representative of the environment encountered by the majority of the United Kingdom population. Males and females were equally represented and ranged in age from 17-65 yrs. The correlation between results obtained by the two techniques was good for all elements measured, ranging from r = 0.88 for Co in urine to r = 0.99 for both Pb and Cd in blood.

Adolescent↗

PubMed2006

Development of a methodology for calcium, iron, potassium, magnesium, manganese, and zinc quantification in teas using X-ray spectroscopy and multivariate calibration.

In this study an analytical methodology for food analyses combining X-ray spectroscopy (XRS) with partial least-squares (PLS) data treatment was developed. Fifteen tea samples were purchased at a local market, and XRS spectra were obtained without sample pretreatment. For comparison of the metal concentrations, the samples were also mineralized, and six elements were determined using flame atomic absorption spectrometry (Ca, Fe, Mg, and Mn), flame atomic emission spectrometry (K), and thermospray flame furnace atomic absorption spectrometry (Zn). The spectral information obtained from XRS and the metal concentrations found using the alternative techniques were employed to generate six PLS models. The Ca and Mn models required four latent variables (LV), Fe, five LV, K, two LV, and Mg and Zn, three LV. The limits of quantification for these models were 614, 134, 761, 140, 85, and 1 mg kg(-1) for Ca, Fe, K, Mg, Mn, and Zn, respectively.

Calcium↗

PubMed2002

Prospective study of posttreatment changes in the temporomandibular joint.

The purpose of this follow-up prospective longitudinal study was to determine what changes occurred in the condyle/fossa relationship after treatment. Orthodontic posttreatment records, including corrected tomograms of 106 white patients (58 Class I and 48 Class II Division 1), from a pretreatment sample of 232 patients, were analyzed. The average pretreatment age was 13.6 +/- 3.0 years. The average length of treatment was 2.3 +/- 0.6 years for the Class I group and 2.8 +/- 0.9 years for the Class II Division 1 group. With orthodontic treatment, the condyle became more concentrically positioned, and a significant (P <.05) decrease in left and right anterior, posterior, and superior joint spaces was observed in most subjects. There was no statistically significant correlation between changes in the condyle/fossa relationship based on age, gender, skeletal or dental variables, signs or symptoms of temporomandibular disorder, headgear use, type of elastics, or nonextraction vs extraction treatment.

Adolescent↗