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At least 235 records · Page 13Linked to original sources

PubMed2000

Observation of bubble dynamics within luminescent cavitation clouds: Sonoluminescence at the nano-scale.

Measurements of acoustically driven cavitation luminescence indicate that this phenomenon is robust over a huge parameter space ranging from 10 kHz to >10 MHz. The minimum bubble radius achieved is an upper bound for the size of the light-emitting region and ranges from about 1 microm at 15 kHz to tens of nm at 11 MHz. Although lines can be discerned in the spectra of some cavitation clouds, they sit on top of a broadband continuum which can have greater spectral density in the ultraviolet than is observed for resonantly driven sonoluminescence from a single bubble.

Journal Article↗

PubMed1989

Pulmonary diffusing capacity: implications of two-phase blood flow in capillaries.

The classical view of oxygen (O2) uptake in pulmonary capillaries assumes implicitly that capillary blood can be regarded as a continuous homogeneous hemoglobin solution. In this study a theoretical model was used to examine the role played by the particulate (two-phase) nature of blood on pulmonary oxygen exchange. Red cells were modelled as discrete hemoglobin (Hb) containing spheres flowing in single file suspension through a cylindrical capillary surrounded by a uniform annulus of alveolar tissue. The model accounted for the free diffusion of O2 from alveolar air space through tissue and plasma, free and Hb facilitated diffusion of O2 inside red cells, and the intracellular kinetics of O2-Hb binding. Oxygen uptake was driven by a specified O2 tension at the alveolar surface. The computed pulmonary diffusing capacity (DLO2) decreased with increasing spacing (Ls) between red cells. The reduction in DLO2 with increasing Ls was marshalled more by a reduction in membrane diffusing capacity (DMO2), than by the reduction in erythrocyte diffusing capacity (DeO2). The dependence of DMO2 on cell spacing stemmed from the manner in which O2 flowed across the alveolar surface into the discrete sinks (red cells) within the capillaries. The degree to which Ls influenced DMO2 was dependent on tissue and plasma layer thickness relative to red cell dimensions. The results indicate that the functional area of the alveolo-capillary membrane for O2 exchange depends on the red cell content of capillaries. Thus, DMO2 is not dictated solely by the morphology of the exchange apparatus (and physical parameters), but has functional determinants as well.

Capillaries↗

PubMed2001

Recent measurements for hadrontherapy and space radiation: nuclear physics.

The particles and energies commonly used for hadron therapy overlap the low end of the charge and energy range of greatest interest for space radiation applications, Z=1-26 and approximately 100-1000 MeV/nucleon. It has been known for some time that the nuclear interactions of the incident ions must be taken into account both in treatment planning and in understanding and addressing the effects of galactic cosmic ray ions on humans in space. Until relatively recently, most of the studies of nuclear fragmentation and transport in matter were driven by the interests of the nuclear physics and later, the hadron therapy communities. However, the experimental and theoretical methods and the accelerator facilities developed for use in heavy ion nuclear physics are directly applicable to radiotherapy and space radiation studies. I will briefly review relevant data taken recently at various accelerators, and discuss the implications of the measurements for radiotherapy, radiobiology and space radiation research.

Cosmic Radiation↗

PubMed2004

A 24-month survey on root canal treatment performed by NiTi engine driven files and warm gutta-percha filling associated system.

AIM: Techniques based on NiTi engine driven files for shaping and warm gutta percha for obturing the root canal space are becoming more and more popular. Aim of this paper is to evaluate, by a clinical longitudinal study, the type of sealing and the outcome of endodontic treatment, performed by new Profile and Thermafil technique, in teeth with or without periapical lesions. METHODS: A total of 122 teeth in 64 patients were consecutively enrolled in the study; 63 teeth had normal periapical status (Group A) and 59 teeth had periapical lesion (Group B). Endodontic therapy was carried out by Profile .04 and Profile .06 NiTi engine driven files and the obturation was made by Thermafil, a filling technique based on heated gutta-percha surrounding a plastic carrier. The type of sealing was evaluated by a score (A best - D worst) and the type of healing was classified as complete, incomplete and failure according to previous published data. The radiographical outcome of the teeth was evaluated by independent observers after 24 months. Data were analysed by non parametric statistics. RESULTS: At the end of the study, 115 teeth (59 group A and 56 group B) were examined. The quality of sealing was evaluated and some differences were reported comparing different types of teeth. The radiographic outcome was evaluated and 94.9% showed to be completely healed in group A and 48.2% in group B (p=0.0001). CONCLUSION: The technique based on NiTi engine driven files and Thermafil heated gutta-percha has shown, after 24 months, results which were comparable to other root canal shaping and filling methods.

Adult↗

PubMed2005

Mach-Zehnder interferometry in a strongly driven superconducting qubit.

We demonstrate Mach-Zehnder-type interferometry in a superconducting flux qubit. The qubit is a tunable artificial atom, the ground and excited states of which exhibit an avoided crossing. Strongly driving the qubit with harmonic excitation sweeps it through the avoided crossing two times per period. Because the induced Landau-Zener transitions act as coherent beamsplitters, the accumulated phase between transitions, which varies with microwave amplitude, results in quantum interference fringes for n = 1 to 20 photon transitions. The generalization of optical Mach-Zehnder interferometry, performed in qubit phase space, provides an alternative means to manipulate and characterize the qubit in the strongly driven regime.

Journal Article↗

PubMed1999

Maximum entropy approach to the determination of solution conformation of flexible polypeptides by global conformational analysis and NMR spectroscopy--application to DNS1-c-[D-A2,bu2,Trp4,Leu5]enkephalin and DNS1-c-[D-A2bu2,Trp4,D-Leu5]enkephalin.

A method is proposed to determine the conformational equilibrium of flexible polypeptides in solution, using the data provided by NMR spectroscopy and theoretical conformational calculations. The algorithm consists of the following three steps: (i) search of the conformational space in order to find conformations with reasonably low energy; (ii) simulation of the NOE spectrum and vicinal coupling constants for each of the low energy conformations; and (iii) determining the statistical weights of the conformations, by means of the maximum-entropy method, in order to obtain the best fit of the averaged NOE intensities and coupling constants to the experimental quantities. The method has been applied to two cyclic enkephalin analogs: DNS1-c-[D-A2bu2,Trp4,Leu5]enkephalin (ENKL) and DNS1-c-[D-A2bu2,Trp4,D-Leu5]enkephalin (ENKD). NMR measurements were carried out in deuterated dimethyl sulfoxide. Two techniques were used in conformational search: the electrostatically driven Monte Carlo method (EDMC), which results in extensive search of the conformational space, but gives only energy minima, and the molecular dynamics method (MD), which results in a more accurate, but also more confined search. In the case of EDMC calculations, conformational energy was evaluated using the ECEPP/3 force field augmented with the SRFOPT solvation-shell model, while in the case of MD the AMBER force field was used with explicit solvent molecules. Both searches and subsequent fitting of conformational weights to NMR data resulted in similar conformations of the cyclic part of the peptides studied. For both ENKL and ENKD a common feature of the low-energy solution conformations is the presence of a type II' or type IV beta-turn at residues 3 and 4; the ECEPP/3 force field also gives a remarkable content of type III beta-turn. These beta-turns are tighter in the case of ENKL, which is reflected in different distributions of the D-A2bu(N gamma H)...D-A2bu(CO) and D-A2bu(N gamma H)...Gly3(CO) hydrogen-bonding distances, indicating that the D-A2bu(N gamma H) amide proton is more shielded from the solvent than in the case of ENKD. This finding conforms with the results of temperature coefficient data of the D-A2bu(N gamma H) proton. It has also been found that direct (MD) or Boltzmann (EDMC) averages of the observables do not exactly conform with the measured values, even when explicit solvent molecules are included. This suggests that improving force-field parameters might be necessary in order to obtain reliable conformational ensembles in computer simulations, without the aid of experimental data.

Algorithms↗

PubMed1984

A cardiac output monitor and diagnostic unit for pneumatically driven artificial hearts.

The pneumatic artificial heart uses a flexible diaphragm to separate blood from air. The air space behind the diaphragm is connected to the atmosphere during diastole. Blood entering the heart during diastole displaces an equal volume of air into the atmosphere. A pneumotachograph is used to sense this flow of air. Integration of the airflow signal with respect to time yields the volume of air displaced during diastole, which is equal to the volume of blood entering the heart over the same period. This measured filling volume is equal to the cardiac output when averaged over a number of cardiac cycles. Allowance is made for regurgitant losses owing to the prosthetic heart valves. The output of the pneumotachograph is independent of absolute pressure, and so the device may also be used during the systolic (air compression) phase of the cardiac cycle. Analysis of the display of the airflow curves during diastole and systole has great diagnostic value. This device is accurate, easy to calibrate, stable, noninvasive, and does not require modification of any existing air-driven artificial hearts.

Air↗

PubMed1998

Visual peripersonal space centred on the face in humans.

A convergent series of studies in monkeys and man suggests that the computation of visual space is performed in several brain regions for different behavioural purposes. Among these multiple spatial areas, the ventral intraparietal cortex, the putamen and the ventral aspect of the premotor cortex (area 6) contain a system for representing visual space near the face (peripersonal space). In these cerebral areas some neurons are bimodal: they have tactile receptive fields on the face, and they can also be driven by visual stimuli located near the tactile field. The spatial correspondence between the visual and tactile receptive fields provides a map of near visual space coded in body-part-centred co-ordinates. In the present study we demonstrate for the first time the existence of a visual peripersonal space centred on the face in humans. In patients with right hemispheric lesions, visual stimuli delivered in the space near the ipsilesional side of the face extinguished tactile stimuli on the contralesional side (cross-modal visuotactile extinction) to the same extent as did an ipsilesional tactile stimulation (unimodal tactile extinction). Furthermore, a visual stimulus presented in the proximity of the contralesional side of the face improved the detection of a left tactile stimulus: i.e. under bilateral tactile presentation patients were more accurate to report the presence of a left tactile stimulus when a simultaneous visual stimulus was presented near the left side of the face. However, when visual stimuli were delivered far from the face, visuotactile extinction and visuotactile facilitation effects were dramatically reduced. These findings are consistent with the hypothesis of a representation of visual peripersonal space coded in bodypart-centred co-ordinates, and they provide a striking demonstration of the modularity of human visual space.

Adult↗

PubMed1984

The compliance problem: a major obstacle in the development of implantable blood pumps.

The compliance problem represents a major obstacle in the development of implantable blood pumps. The motor-driven pumps are enclosed in an airtight casing with gas in the motor space. The trapped gas in the motor space either increases the load on the motor during systole or impedes blood sac filling. Potential solutions to the compliance problem include the use of a conventional blood pump with a compliance chamber, a blood pump with an isolated blood sac and accumulator, or a volume-compensated blood pump. Most experimental studies designed to investigate this problem have been performed with compliance chambers. An ideal compliance chamber should accept 100 ml gas with less than a 15-mm Hg increase in pressure and should automatically compensate for changes in atmospheric pressure. To date, two designs have been shown to be effective in laboratory and animal studies: a collapsible rectangular sac design developed by our group, and a lenticular chamber developed by Nosé and associates. Compliance chambers of the former design have now been employed to provide the required compliance for motor-driven assist pumps in long-term calf studies.

Assisted Circulation↗

PubMedDate not supplied

MR imaging of blood vessels with an intravascular coil.

A method for producing high-resolution magnetic resonance (MR) images of blood vessel walls is described. The authors review a theoretical analysis of receiver-coil design and present a coil well suited for intravascular MR imaging. The design is based on two coaxial solenoids separated by a gap region and with current driven in opposite directions. Placement of this receiver coil within the vascular space is shown to provide a substantial increase in sensitivity over that external surface coils. Experimental verification of these predictions was obtained in a vessel phantom in which a 13-cm surface coil was compared with a 3.5-mm-diameter opposed-solenoid intravascular coil. This intravascular coil had a cylindric region of high sensitivity that offered a 10-fold improvement in signal-to-noise ratio over that of an external coil near the vessel wall. The performance of this coil was also tested in the jugular vein of a swine.

Animals↗

PubMed1992

Subzonal insemination of a single mouse spermatozoon with a personal computer-controlled micromanipulation system.

A personal computer-controlled micromanipulation system was developed for automatic injection of spermatozoa into the perivitelline space of mouse ova. A pair of three-dimensional hydraulic micromanipulators driven by pulse motors was used for this automatic system. The pulse signals that regulate the motors are initiated by the computer program, and these signals cause the micromanipulator to move the microtool precisely. The computer program was designed to perform the most effective movements of the sperm injection needle used during manual micromanipulation. Prior to the manipulation, the computer locates the tip of the injection needle and the end of the egg-holding pipette in the microscope field using image processing. The trajectory of the injection needle is determined according to these initial positions. Using this robotic system, subzonal insemination with a single mouse spermatozoon was attempted in a total of 143 ova. The sperm insertion was successfully completed in all cases without damaging any of the ova. Spermatozoa treated with ionophore A23187 and those without the treatment were used. The fertilization rate (68.8%) of the ova inseminated with treated sperm was significantly higher than that (37.5%) obtained with the nontreated sperm (P less than 0.05). These findings suggest the feasibility and potential for further applications of a robotic microinsemination system and, in addition, that a higher fertility rate in the subzonal insemination of mouse ova can be achieved with the ionophore treatment of spermatozoa.

Animals↗

PubMed2000

Adenovirus-mediated in utero gene transfer in mice and guinea pigs: tissue distribution of recombinant adenovirus determined by quantitative TaqMan-polymerase chain reaction assay.

Fetal somatic cell gene therapy could become an attractive solution for some congenital genetic diseases or the disorders which manifest themselves during the fetal period. We performed adenovirus-mediated gene transfer to mice and guinea pig fetuses in utero and evaluated the efficiency of gene transfer by histochemical analysis and a quantitative TaqMan-polymerase chain reaction (TaqMan-PCR) assay. We first injected a replication-deficient recombinant adenovirus containing the Escherichia coli LacZ gene driven by a CAG promoter (AxCALacZ) into pregnant mice through the amniotic space, placenta, or intraperitoneal space of the fetus. Histochemical analysis showed limited transgene expression in fetal tissues. We then administered AxCALacZ to guinea pig fetuses in the late stage of pregnancy through the umbilical vein. The highest beta-galactosidase expression was observed in liver followed by moderate expression in heart, spleen, and adrenal gland. The transgene expression was also present in kidney, intestine, and placenta to a lesser degree. No positively stained cells were observed in lung, muscle, or pancreas except in the vascular endothelium of these organs. Quantitative measurement of recombinant adenoviral DNA by the TaqMan-PCR assay showed that the vast majority of the injected viruses was present in liver. The current study indicated that adenovirus-mediated gene transfer into guinea pig fetus through the umbilical vein is feasible and results in efficient transgene expression in fetal tissues. The experimental procedures using pregnant guinea pigs might serve as a good experimental model for in utero gene transfer. Since our TaqMan-PCR assay detects the LacZ gene, one of the most widely used reporter genes, it may be generally applicable to adenovirus quantification in various gene transfer experiments.

Adenoviridae↗

PubMed1999

Layered murein revisited: a fundamentally new concept of bacterial cell wall structure, biogenesis and function.

The classical concept of the architecture of microbial murein assumes cross-linked glycan chains to be arranged in horizontal layers outside of the plasma membrane. It necessitates elaborate hypotheses to explain processes such as the biosynthesis, growth and division of the bacterial cell wall and provides no explanation for transenvelope macromolecular transport. Moreover, this model is difficult to reconcile with a number of basic chemical and electron microscopical data. According to a fundamentally distinct concept which is presented here, glycan strands in the microbial wall run perpendicular to the plasma membrane, each strand being cross-linked by peptide bridges with four other strands. This arrangement allows the formation of a structured matrix pierced with ordered ionophoric channels potentially harboring either lipoprotein or teichoic (lipoteichoic) acid molecules in Gram-negative and Gram-positive bacteria, respectively. New wall structures are synthesized in toto emerging from the cytoplasmic membrane as a condensed gel-like network below the old wall without being covalently attached to it, expanding due to inherent elasticity as the old wall is lyzed. This model reflects published genetic and biochemical data and offers a simple explanation for peptidoglycan biogenesis. As the biosynthesis is terminated by enzymic cleavage of all glycan strands, murein is irreversibly released from the membrane. The murein detachment prepares the membrane for de novo assembly of both the new wall synthesis machinery and the multicomponent factory for protein, DNA and phospholipid transfer. Being assembled in parallel, both new murein and the traffic complexes grow from the membrane together. This concept eliminates the necessity for the traffic complexes to penetrate intact murein. In the process of simultaneous assembly, the expanding murein functions as a lifting platform driven by the force of turgor pressure, transporting macromolecules through the perisplasmic space.

Cell Wall↗

PubMed1989

The biological clock of Neurospora in a microgravity environment.

The circadian rhythm of conidiation in Neurospora crassa is thought to be an endogenously derived circadian oscillation; however, several investigators have suggested that circadian rhythms may, instead, be driven by some geophysical time cue(s). An experiment was conducted on space shuttle flight STS-9 in order to test this hypothesis; during the first 7-8 cycles in space, there were several minor alterations observed in the conidiation rhythm, including an increase in the period of the oscillation, an increase in the variability of the growth rate and a diminished rhythm amplitude, which eventually damped out in 25% of the flight tubes. On day seven of flight, the tubes were exposed to light while their growth fronts were marked. Some aspect of the marking process reinstated a robust rhythm in all the tubes which continued throughout the remainder of the flight. These results from the last 86 hours of flight demonstrated that the rhythm can persist in space. Since the aberrant rhythmicity occurred prior to the marking procedure, but not after, it was hypothesized that the damping on STS-9 may have resulted from the hypergravity pulse of launch. To test this hypothesis, we conducted investigations into the effects of altered gravitational forces on conidiation. Exposure to hypergravity (via centrifugation), simulated microgravity (via the use of a clinostat) and altered orientations (via alterations in the vector of a 1 g force) were used to examine the effects of gravity upon the circadian rhythm of conidiation.

Biological Clocks↗

PubMed2003

T2 mapping of muscle.

Muscle activation produces increases in magnetic resonance ( T(2)) signal intensity leading to recruitment images that demonstrate spatial patterns and intensity of muscle activation. These T(2) activation maps are useful for visualizing and quantifying various aspects of muscle function. Activity-dependent changes in T(2) result from an increase in the T(2) relaxation time of muscle water. The current state of investigation indicates that the mechanism of increased T(2) results from osmotically driven shifts of muscle water that increase the volume of the intracellular space and from intracellular acidification resulting from the end products of metabolism. Although the spatial resolution of magnetic resonance imaging is still insufficient to map territories of individual motor units, it is possible to demonstrate nonuniform activation between subregions or compartments of muscle. Taken together, the attributes of the T(2) mapping technique hold great potential for demonstrating aberrant muscle activation patterns in pathology and positive adaptation to exercise or rehabilitative intervention.

Biomechanical Phenomena↗

PubMed1997

Dynamics of a pair of spherical gravitating shells.

The dynamical N body problem for a system of mass points interacting solely through gravitational forces is not integrable. The difficulties which arise in constructing accurate numerical codes for simulating the motion over long time scales are legend. Thus, in order to test their theories, astronomers and astrophysicists resort to simpler, one-dimensional models which avoid the problems of binary formation, escape, and the singularity of the inverse square force law. To date, the most frequently employed "test" model consists of a system of parallel mass sheets moving perpendicular to their surface. While this system avoids all of the above problems, the time scale for reaching equilibrium is extremely long and probably arises from the system's weak ergodic properties, which become manifest even in the three sheet system. Here we consider a different one-dimensional gravitating system consisting of nonrotating concentric mass shells. For the case of two shells we investigate the structure of the phase space by studying the stability of periodic trajectories. By employing an event driven algorithm, we are able to directly investigate the influence of the singularity without having to resort to regularization of the force. Although stable structures are present at every energy, we find that the ergodic properties of this system are more robust than its planar counterpart. (c) 1997 American Institute of Physics.

Journal Article↗

PubMed2002

A deterministic iterative least-squares algorithm for beam weight optimization in conformal radiotherapy.

Currently, inverse treatment planning in conformal radiotherapy is, in part, a trial-and-error process due to the interplay of many competing criteria for obtaining a clinically acceptable dose distribution. A new method is developed for beam weight optimization that incorporates clinically relevant nonlinear and linear constraints. The process is driven by a nonlinear, quasi-quadratic objective function and the solution space is defined by a set of linear constraints. At each step of iteration, the optimization problem is linearized by a self-consistent approximation that is local to the existing dose distribution. The dose distribution is then improved by solving a series of constrained least-squares problems using an established method until all prescribed constraints are satisfied. This differs from the current approaches in that it does not rely on the search for the global minimum of a specific objective function. Essentially, our proposed objective function can be construed as a functional that comprises a class of dose-based quadratic objective functions. Empirical adjustment for appropriate model parameters in the construction of objective function is minimized, since these parameters are in effect adaptively adjusted during optimization. The method is robust in solving difficult clinical cases using either aperture or pencil beam based planning techniques for intensity-modulated radiation therapy.

Algorithms↗

PubMed2007

Accurate and scalable surface representation and reconstruction from images.

We introduce a new surface representation method, called patchwork, to extend three-dimensional surface reconstruction capabilities from multiple images. A patchwork is the combination of several patches that are built one by one. This design potentially allows for the reconstruction of an object with arbitrarily large dimensions while preserving a fine level of detail. We formally demonstrate that this strategy leads to a spatial complexity independent of the dimensions of the reconstructed object and to a time complexity that is linear with respect to the object area. The former property ensures that we never run out of storage and the latter means that reconstructing an object can be done in a reasonable amount of time. In addition, we show that the patchwork representation handles equivalently open and closed surfaces, whereas most of the existing approaches are limited to a specific scenario, an open or closed surface, but not both. The patchwork concept is orthogonal to the method chosen for surface optimization. Most of the existing optimization techniques can be cast into this framework. To illustrate the possibilities offered by this approach, we propose two applications that demonstrate how our method dramatically extends a recent accurate graph technique based on minimal cuts. We first revisit the popular carving techniques. This results in a well-posed reconstruction problem that still enjoys the tractability of voxel space. We also show how we can advantageously combine several image-driven criteria to achieve a finely detailed geometry by surface propagation. These two examples demonstrate the versatility and flexibility of patchwork reconstruction. They underscore other properties inherited from patchwork representation: Although some min-cut methods have difficulty in handling complex shapes (e.g., with complex topologies), they can naturally manipulate any geometry through the patchwork representation while preserving their intrinsic qualities. The above properties of patchwork representation and reconstruction are demonstrated with real image sequences.

Algorithms↗