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PubMed1976

At the bamboo roots - 1.

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Education, Nursing, Diploma Programs↗
PubMed2026

SSR marker development for analysis of the genetic diversity and identification of species and infraspecific ranks in the genus Phyllostachys.

Bamboo plants possess important ecological, economic, and cultural values. However, it is difficult to accurately identify them on the basis of their morphological traits alone. Here, based on the whole-genome data of moso bamboo (Phyllostachys edulis) and its 20 forms, we conducted preliminary identification and comparative analyses of simple sequence repeats (SSRs) to develop molecular markers. In total, 3,835,632 SSR loci were identified from 31,537.81 Mb of genomic sequences, among which dinucleotide SSRs were the most abundant. Most SSRs were located in intergenic regions, whereas relatively fewer were in genic regions. In addition, we found that SSR-containing genes involved in plant hormone signal transduction may be associated with the morphogenesis of moso bamboo, which was speculated to be related to differential gene expression patterns among different forms. Furthermore, 206 SSR primer pairs with polymorphisms were obtained to analyse the genetic diversity of moso bamboo and its forms, which exhibited moderate polymorphism. The proportion of genetic variation among species within the genus Phyllostachys was 58%, while that within species was 42%. Moso bamboo and its 20 forms had relatively close genetic relationships and low genetic differentiation, while 20 species of the genus Phyllostachys were clustered into three groups with distinct levels of genetic diversity. Finally, DNA fingerprints and molecular identity cards were constructed for 20 moso bamboo forms and 20 species of the genus Phyllostachys using core SSR markers. These results provide novel SSR markers for bamboo identification, germplasm conservation, and molecular marker-assisted breeding.

Microsatellite Repeats↗
PubMed1997

Molecular evolution and phylogenetic utility of the chloroplast rpl16 intron in Chusquea and the Bambusoideae (Poaceae).

Phylogenetic relationships within Chusquea, a diverse genus of neotropical woody bamboos, and among selected members of the Bambusoideae were explored using rpl16 intron sequence data from the chloroplast genome. Mechanisms of mutation, including slipped-strand mispairing, secondary structure, minute inversions, and base substitutions, were examined within the rpl16 intron, and their effects on sequence alignment and phylogenetic analysis were investigated. Thirty-five bamboo sequences were generated and two separate matrices were analyzed using maximum parsimony. In the first, 23 sequences from Chusquea, 1 of Neurolepis, and 3 outgroups were included. Neurolepis was supported as sister to Chusquea, Chusquea was strongly supported as a monophyletic lineage, and three species of Chusquea subg. Rettbergia were resolved as the most basal clade within the genus. In the second analysis, 15 sequences, 14 from across the subfamily and 1 outgroup, were included. A Bambusoideae clade was recovered with the Olyreae/Parianeae (herbaceous bamboos) and the Bambuseae (woody bamboos) each supported as monophyletic. Two clades corresponding to temperate and tropical woody bamboos were derived within the Bambuseae and the tropical taxa were further split into New World and Old World clades. The rpl16 intron in bamboos was found to be susceptible to frequent length mutations of multiple origins, nonindependent character evolution, and regions of high mutability, all of which created difficulties in alignment and phylogenetic analysis; nonetheless the rpl16 intron is phylogenetically informative at the inter- and intrageneric levels in bamboos.

Chloroplasts↗
PubMed2002

Assessing habitat utilization by neotropical primates: a new approach.

This study aims to ascertain habitat utilization, in relation to forest structural variation, by a multi-species group of primates in tropical lowland rainforest in Southeast Peru during dry season. A new approach to assessing habitat utilization was used. Habitat variation was described by structural and indicator variables collected in quadrats along transects through a study area within Terra Firme and Floodplain forest. Variables were grouped into 'factors' accounting for most of the variation by means of a Principal Components Analysis (PCA). Presence or absence of the primates within the quadrats, assessed by repeat transect surveys, was taken to indicate habitat preferences. Discrimination between the habitat and forest structure in areas of primate presence as opposed to absence was carried out by means of Discriminant Function Analysis (DFA). This highlighted patterns in most utilized habitat. Vertical utilization of the forest was also assessed along with presence in bamboo and general activity on encounter. Suggestions of habitat preference and utilization are made for each of the six sympatric species studied, based on significantly discriminating habitat factors, vertical stratification on encounter and relationships with bamboo. Saguinus fuscicollis and Cebus moloch appeared as habitat generalists. Cebus apella, Saimiri sciureus, and Aotus spp., exhibited varying degrees of preference for habitat factors suggesting disturbed forest, Cebus albifrons was more generalistic but with a possible association with primary, naturally disturbed forest. C. apella was encountered in Terra Firme forest significantly more than in Floodplain. For S. sciureus, C. moloch, and C. apella, upper understory was the most utilized forest layer, for C. albifrons, middle canopy and for S. sciureus and Aotus spp., lower understory. Both positive and negative relationships with bamboo were highlighted. Significant positive relationships between Aotus spp., and bamboo suggest dense bamboo stands provide important daytime resting sites for this nocturnal species. C. moloch was also shown to utilize bamboo whereas S. fuscicollis appeared to actively avoid it. High levels of conformity with past studies in terms of habitat utilization patterns described for the species studied supports the conclusion that the methods used in this study provide an effective means of assessing primate habitat utilization within complex habitat.

Animals↗
PubMedDate not supplied

Rhizomys sumatrensis and Cannomys badius, new natural animal hosts of Penicillium marneffei.

The incidence of Penicillium marneffei infection has increased substantially, especially in persons with HIV infection. Very little is known about the natural reservoirs or animal hosts of P. marneffei. This pathogenic fungus was first isolated from a species of bamboo rat (Rhizomys sinensis) in Vietnam and later from another rodent species, R. pruinosus. We studied a total of 75 captured bamboo rats; P. marneffei could be isolated from the internal organs of 13 of 14 (92.8%) of large bamboo rats, R. sumatrensis, and of 3 of 10 reddish-brown small bay bamboo rats, Cannomys badius (30%). All 51 greyish-black C. badius were negative on culture. Among R. sumatrensis, P. marneffei were frequently recovered from the lungs (85.7%), spleen (50%) and liver (28.6%). Of the 28 soil samples collected from the bamboo rat burrows and the 67 from the residential areas of patients with P. marneffei infection, P. marneffei was isolated from one soil sample collected from a burrow of R. sumatrensis. The mycological characteristics of P. marneffei isolates from bamboo rats and humans were very similar. Our data indicate that R. sumatrensis and C. badius may be important animal hosts of P. marneffei in northern Thailand.

Animals↗
PubMed1997

Seasonal variation in activity and diet in a small-bodied folivorous primate, Hapalemur griseus, in southeastern Madagascar.

How small-bodied (500-1,200 g) folivorous prosimian primates cope with large amounts of foliage in their diet seasonally has yet to be determined for many species such as Hapalemur griseus, which specializes on bamboo. To address this issue, we present results on seasonal variation in activity and diet from a wild group of H. griseus in southeastern Madagascar. Throughout the study (which was conducted from July-November 1994 and July 1995-February 1996), H. griseus primarily fed on new growth from three species of bamboo: two species of liana bamboo and Cephalostachyum perrieri. Bamboo species were used in different ways seasonally; liana bamboo was consumed more during the dry, cool season, and C. perrieri was eaten more often during the wet, warm season. H. griseus also spent more of their time feeding and traveling than nocturnal folivores of similar body size during the dry season. During the warm wet season, H. griseus decreased the amount of time spent feeding and traveling and rested more often. We hypothesize that seasonal changes in activity may be primarily related to the distribution and availability of food sources and/or reproductive cycles.

Animals↗
PubMed2006

Silica deposition in abaxial epidermis before the opening of leaf blades of Pleioblastus chino (Poaceae, Bambusoideae).

UNLABELLED: BACKGROUND AND AIMS Silica deposition is one of the important characteristics of the family Poaceae. The distribution, deposition process and physiology of silica in this family have been extensively investigated. Bamboos among members of Poaceae have leaves with a fairly long life span, and the leaves continuously accumulate silica in their tissues throughout their life, not only during the course of leaf opening, but also after opening. It has been revealed that the silica deposition process in relation to ageing of the bamboo leaf after opening differed depending on the cell types comprising the tissues. However, silica deposition has never been examined during the development and maturation periods of bamboo leaves. Hence, to clarify the silica deposition process in a developmental stage of the bamboo leaf, distribution of silica was observed in the abaxial epidermis before the opening of the leaf blades of Pleioblastus chino. METHODS: Abaxial epidermal tissues of leaves were examined using a scanning electron microscope equipped with an energy dispersive X-ray microanalyser. KEY RESULTS: Among seven cell types comprising the abaxial epidermis, three types of cells, guard cells, prickle hairs and silica cells, deposited silica conspicuously, and another four types, cork cells, long cells, micro hairs and subsidiary cells, deposited only a little silica. Among the former group of cell types, silica cells and guard cells deposited silica over their entire surfaces, while prickle hairs deposited silica only in the point-tips. Silica deposition was detected firstly in prickle hairs, and then in silica cells and guard cells. Only silica cells were assumed to deposit silica conspicuously before leaf opening but not conspicuously after opening. CONCLUSIONS: Cell types in leaf epidermis of bamboo are classified into three groups according to the silica deposition pattern. Silica deposition in silica cells may be positive as a part of the physiological activities of leaves.

Cell Differentiation↗
PubMed2006

Interactive effects of natural and human disturbances on vegetation dynamics across landscapes.

Accurate measures of human effects on landscape processes require consideration of both the direct impacts from human activities and the indirect consequences of the interactions between humans and the landscape. This is particularly evident in systems experiencing regular natural disturbances such as in the mountainous areas of southwestern China, where the remaining population of giant pandas (Ailuropoda melanoleuca) is supported. Here the spatiotemporal patterns of human impacts, forests, and bamboo episodic die-offs combine to determine the distribution of panda habitat. To study the complex interactions of humans and landscapes, we developed an integrated spatiotemporally explicit model of household activities, natural vegetation dynamics, and their impacts on panda habitat. Using this model we examined the direct consequences of local fuelwood collection and household creation on areas of critical giant panda habitat and the indirect impacts when coupled with vegetation dynamics. Through simulations, we found that over the next 30 years household impacts would result in the loss of up to 30% of the habitat relied on by pandas during past bamboo die-offs. The accumulation and spatial distribution of household impacts would also have a considerable indirect influence on the spatial distribution of understory bamboo. While human impacts influence both bamboo die-off and regeneration, over 19% of pre-existing low-elevation bamboo habitat may be lost following an episodic die-off depending on the severity of the impacts and timing of the die-offs. Our study showed not only the importance of the spatial distribution of direct household impacts on habitat, but also the far-reaching effects of the indirect interactions between humans and the landscapes they are modifying.

Animals↗