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PubMed1985

Oxidant abundances in rainwater and the evolution of atmospheric oxygen.

A one-dimensional photochemical model has been used to estimate the flux of dissolved hydrogen peroxide (H2O2) and of other soluble species in rainwater as a function of atmospheric oxygen level. H2O2 should have replaced O2 as the dominant oxidant in rainwater at oxygen levels below 10(-3)-10(-2) times the present atmospheric level (PAL). The exact value of pO2 at which H2O2 becomes more important than O2 depends on the abundance of trace gases such as CO, CH4, and NO. H2O2 was probably an important oxidant even in an O2-free atmosphere, provided that CO2 levels were significant higher than today's. In model atmospheres containing free O2 the concentration of photochemically produced oxidants generally exceeds that of photochemically produced reductants. The oxidizing power of rainwater is therefore greater than that due to dissolved molecular O2 alone. The difference is small at present but becomes important at O2 levels less than 10(-3) PAL. At O2 levels between 10(-4) and 10(-5) PAL the oxidizing power of rainwater is almost independent of pO2. Precambrian soils in which a part or all of the Fe2+ in their source rocks has been oxidized to Fe3+ could therefore have developed in the presence of an atmosphere with very low values of pO2. On the other hand, the upper limit for pO2 during early and mid-Precambrian time suggested by the incomplete oxidation of FeO in soils developed on basaltic rocks is affected only slightly by the presence of photochemical products in rainwater.

Atmosphere↗
PubMed1977

Deuterolysis of amino acid precursors: evidence for hydrogen cyanide polymers as protein ancestors.

Deuterolysis experiments suggest that hydrogen cyanide polymers rather than aminoacetonitriles are major precursors of alpha-amino acids obtained from spark reactions and other studies on chemical evolution. These results are consistent with the hypothesis that the original heteropolypeptides on the earth were synthesized spontaneously from hydrogen cyanide and water without the intervening formation of alpha-amino acids.

Amino Acids↗
PubMed2004

Montmorillonite, oligonucleotides, RNA and origin of life.

Na-montmorillonite prepared from Volclay by the titration method facilitates the self-condensation of ImpA, the 5'-phosphorimidazolide derivative of adenosine. As was shown by AE-HPLC analysis and selective enzymatic hydrolysis of products, oligo(A)s formed in this reaction are 10 monomer units long and contain 67% 3',5'-phosphodiester bonds (Ferris and Ertem, 1992a). Under the same reaction conditions, 5'-phosphorimidazolide derivatives of cytidine, uridine and guanosine also undergo self-condensation producing oligomers containing up to 12-14 monomer units for oligo(C)s to 6 monomer units for oligo(G)s. In oligo(C)s and oligo(U)s, 75-80% of the monomers are linked by 2',5'-phosphodiester bonds. Hexamer and higher oligomers isolated from synthetic oligo(C)s formed by montmorillonite catalysis, which contain both 3',5'- and 2',5'-linkages, serve as catalysts for the non-enzymatic template directed synthesis of oligo(G)s from activated monomer 2-MeImpG, guanosine 5'-phospho-2-methylimidazolide (Ertem and Ferris, 1996). Pentamer and higher oligomers containing exclusively 2',5'-linkages, which were isolated from the synthetic oligo(C)s, also serve as templates and produce oligo(G)s with both 2',5'- and 3',5'-phosphodiester bonds. Kinetic studies on montmorillonite catalyzed elongation rates of oligomers using the computer program SIMFIT demonstrated that the rate constants for the formation of oligo(A)s increased in the order of 2-mer < 3-mer < 4-mer ... < 7-mer (Kawamura and Ferris, 1994). A decameric primer, dA(pdA)8pA bound to montmorillonite was elongated to contain up to 50 monomer units by daily addition of activated monomer ImpA to the reaction mixture (Ferris, Hill and Orgel, 1996). Analysis of dimer fractions formed in the montmorillonite catalyzed reaction of binary and quaternary mixtures of ImpA, ImpC, 2-MeImpG and ImpU suggested that only a limited number of oligomers could have formed on the primitive Earth rather than equal amounts of all possible isomers (Ertem and Ferris, 2000). Formation of phosphodiester bonds between mononucleotides by montmorillonite catalysis is a fascinating discovery, and a significant step forward in efforts to find out how the first RNA-like oligomers might have formed in the course of chemical evolution. However, as has been pointed out in several publications, these systems should be regarded as models rather than a literal representation of prebiotic chemistry (Orgel, 1998; Joyce and Orgel, 1999; Schwartz, 1999).

Bentonite↗
PubMed1971

Interconnected patterns of biogeography and evolution.

Analysis of the fauna of the carabid beetles of New Guinea reveals both a broad dispersal pattern and a local turnover pattern that together fit into a world-wide pattern of successive dispersals and replacements that run from large to small areas and from more to less favorable climates. This pattern coincides broadly with a world-wide pattern of species numbers. Evolution by group selection, proceeding most rapidly and effectively where species are most numerous, connects the patterns and can supply the force that gives direction to the dispersal pattern. Directional change at any level of complexity involves movement that results in the formation of diverse groups of units (which are themselves groups of smaller units) and differential survival. This process-generalized group selection-has been continuous from chemical evolution on the earth's surface, through the origin of life, and into successive interacting levels of organic evolution. A corollary is that evolution should make situations favorable to itself, by group selection, and has probably done so in (for example) tropical rain forest, where new information about group evolution may be sought.

Journal Article↗
PubMed2005

Constraining the spectrum of supernova neutrinos from nu-process induced light element synthesis.

We constrain energy spectra of supernova neutrinos through the avoidance of an overproduction of the 11B abundance during Galactic chemical evolution. In supernova nucleosynthesis calculations with a parametrized neutrino spectrum as a function of temperature of nu(mu,tau) and nu(mu,tau) and total neutrino energy, we find a strong neutrino temperature dependence of the 11B yield. When the yield is combined with observed abundances, the acceptable range of the nu(mu,tau) and nu(mu,tau) temperature is found to be 4.8 to 6.6 MeV. Nonzero neutrino chemical potentials would reduce this temperature range by about 10% for a degeneracy parameter eta(nu) = mu(nu)/kT(nu) smaller than 3.

Journal Article↗
PubMedDate not supplied

Interpretation of the results of investigating molecular fossils.

The difficulties and possible errors in interpreting the results of investigating molecular fossils within the scope of the problem of chemical evolution and origin of life on the earth are examined. These difficulties can be largely overcome on the basis of modeling processes of the transformation of organic matter under different geological conditions.

Amino Acids↗
PubMedDate not supplied

Stoichiometric network analysis.

Stoichiometric network analysis is a systematic, general approach to the qualitative, nonlinear dynamics of chemical reaction mechanisms and other systems with stoichiometry. The advantage of a qualitative approach is that no rate constants are needed to determine qualitative features of the dynamics. If one is interested in stability, the approach yields inequalities among the steady-state concentrations and the rate of flow through sequences of important reactions. These parameters are often the ones most easily measured experimentally. By comparing such experiments with the inequalities derived from stoichiometric network analysis, one can often prove that certain mechanisms cannot account for oscillations or other types of observed dynamics. The approach covers far more than stability. The existence of steady states of zero concentration has an interesting mathematics and applies to chemical evolution. The folding of the manifold of steady states can be found by direct calculation and plays a role in switching enzymes on and off. The approach leads to theorems showing that some steady states are globally attracting or, possibly, that a region containing chaos or an oscillation is globally attracting. The subject of sensitivity analysis has been reformulated in this context. Algorithms that apply many of the theoretical results to chemical networks have been developed and combined into a computer program package.

Chemical Phenomena↗
PubMed1993

Aldehydes in hydrothermal solution: standard partial molal thermodynamic properties and relative stabilities at high temperatures and pressures.

Aldehydes are common in a variety of geologic environments and are derived from a number of sources, both natural and anthropogenic. Experimental data for aqueous aldehydes were taken from the literature and used, along with parameters for the revised Helgeson-Kirkham-Flowers (HKF) equations of state, to estimate standard partial molal thermodynamic data for aqueous straight-chain alkyl aldehydes at high temperatures and pressures. Examples of calculations involving aldehydes in geological environments are given, and the stability of aldehydes relative to carboxylic acids is evaluated. These calculations indicate that aldehydes may be intermediates in the formation of carboxylic acids from hydrocarbons in sedimentary basin brines and hydrothermal systems like they are in the atmosphere. The data and parameters summarized here allow evaluation of the role of aldehydes in the formation of prebiotic precursors, such as amino acids and hydroxy acids on the early Earth and in carbonaceous chondrite parent bodies.

Aldehydes↗
PubMed2005

A hydrogen-rich early Earth atmosphere.

We show that the escape of hydrogen from early Earth's atmosphere likely occurred at rates slower by two orders of magnitude than previously thought. The balance between slow hydrogen escape and volcanic outgassing could have maintained a hydrogen mixing ratio of more than 30%. The production of prebiotic organic compounds in such an atmosphere would have been more efficient than either exogenous delivery or synthesis in hydrothermal systems. The organic soup in the oceans and ponds on early Earth would have been a more favorable place for the origin of life than previously thought.

Amino Acids↗
PubMed2002

Numerical models, geochemistry and the zero-paradox noble-gas mantle.

Numerical models of whole-mantle convection demonstrate that degassing of the mantle is an inefficient process, resulting in ca. 50% of the (40)Ar being degassed from the mantle system. In this sense the numerical simulations are consistent with the (40)Ar mass balance between the atmosphere and mantle reservoir. These models, however, are unable to preserve the large-scale heterogeneity predicted by models invoking geochemical layering of the mantle system. We show that the three most important noble-gas constraints on the geochemically layered mantle are entirely dependent on the (3)He concentration of the convecting mantle derived from the (3)He flux into the oceans and the average ocean-crust generation rate. A factor of 3.5 increase in the convecting-mantle noble-gas concentration removes all requirements for: a (3)He flux into the upper mantle from a deeper high (3)He source; a boundary in the mantle capable of separating heat from helium; and a substantial deep-mantle reservoir to contain a hidden (40)Ar rich reservoir. We call this model concentration for the convecting mantle the 'zero-paradox' concentration. The time-integrated flux of (3)He into the oceans is a robust observation, but only representative of the ocean-floor activity over the last 1000 years. In contrast, ocean-floor generation occurs over tens of millions of years. We argue that combining these two observations to obtain the (3)He concentration of the mantle beneath mid-ocean ridges is unsound. Other indicators of mantle (3)He concentration suggest that the real value may be at least a factor of two higher. As the zero-paradox concentration is approached, the noble-gas requirement for mantle layering is removed. We further consider the role that recycled material plays in ocean-island-basalt generation and show that a source with high (3)He and (3)He/(4)He must exist within the mantle. Nevertheless, only a small amount of this material is required to generate both the observed ocean-island (3)He/(4)He ratios and the concentrations inferred from basalt samples for this mantle source.

Argon↗
PubMed1997

[Detection of organic compounds on Mars].

McKay et al. detected polycyclic aromatic hydrocarbons (PAHs) in Martian meteorite ALH 84001 by two-step laser mass spectrometry. From the presence of PAHs, together with other results, they concluded that there were past life of Mars. On the other hands, no organisms nor organic compounds were detected in Martian regolith in Viking experiments in 1976. In order to obtain solid evidence for organisms or bioorganic compounds compounds on Mars, further analyses of Martian samples are required. There may be four classes of organic compounds on Mars, which are (i) organic compounds abiotically formed from primitive Mars atmosphere, (ii) Organic compounds delivered out of Mars, (iii) Organic compounds biotically formed by Mars organisms, and (iv) Organic compounds abiotically formed from the present Mars atmosphere. Possible organic compounds on Mars and analytical methods for them are discussed.

Evolution, Chemical↗
PubMed2006

Early breakthrough of molybdenum and uranium in a permeable reactive barrier.

A permeable reactive barrier (PRB) using zerovalent iron (ZVI) was installed at a site near Cañon City, CO, to treat molybdenum (Mo) and uranium (U) in groundwater. The PRB initially decreased Mo concentrations from about 4.8 to less than 0.1 mg/L; however, Mo concentrations in the ZVI increased to 2.0 mg/L after about 250 days and continued to increase until concentrations in the ZVI were about 4 times higherthan in the influent groundwater. Concentrations of U were reduced from 1.0 to less than 0.02 mg/L during the same period. Investigations of solid-phase samples indicate that (1) calcium carbonate, iron oxide, and sulfide minerals had precipitated in pores of the ZVI; (2) U and Mo were concentrated in the upgradient 5.1 cm of the ZVI; and (3) calcium was present throughout the ZVI accounting for up to 20.5% of the initial porosity. Results of a column test indicated that the ZVI from the PRB was still reactive for removing Mo and that removal rates were dependenton residence time and pH. The chemical evolution of the PRB is explained in four stages that present a progression from porous media flow through preferential flow and, finally, complete bypass of the ZVI.

Absorption↗
PubMedDate not supplied

Experimental simulation of Titan's organic chemistry at low temperature.

A wide range of experiments has already been carried out to simulate the chemical evolution of Titan. Such experiments can provide useful information on the possible nature of minor constituents, mostly organic, likely to be present in Titan's atmosphere. Indeed, all but one of the organic compounds already detected in Titan's atmosphere have been identified in simulation experiments. The exception, C4N2, as well as other compounds expected in Titan from theoretical modeling, such as other N-organics, mainly CH2N2, and polyynes, namely C6H2, have never been detected in experimental simulation. It turned out that these compounds were thermally unstable, and the temperature conditions used during the simulation experiments (including conditions used for chemical analysis) were not appropriate. We have recently started a new program of simulation experiments using temperature conditions close to those of Titan's environment, more compatible with the build-up and detection of organics only stable at low temperature. Spark discharge of N2-CH4 gas mixtures was carried out at low temperature in the range of 100-150 K. The analysis of the obtained products was performed through FTIR, GC and GC-MS techniques. GC-peak identification was done owing to its mass spectrum and, in most cases, by comparison of the retention time and of the mass spectrum with standards. We report here the first detection in Titan's simulation experiments of C6H2. Its abundance is a few 10(-2) relative to C4H2. We also report a tentative identification of HC5N (to be confirmed by use of standard) with an abundance of a few 10(-2) relative to HC3N. The possible presence of HC5N suggested by our work provides the occurrence of very novel pathways in the formation of Titan's organic aerosols, involving not only C and H but also N atoms.

Acetylene↗
PubMed1982

Organic syntheses from CH4-N2 atmospheres: implications for Titan.

Numerous experiments have already been performed, simulating the evolution of gaseous mixtures containing CH4 when submitted to energy flux. From their results, it appears that a variety of organic compounds, including unsaturated hydrocarbons and nitriles such as HCN, can be synthesized into noticeable amounts from CH4-N2 mixtures. In particular, systematic studies of the influence of the composition of the mixture on the nature and amount of synthesized compounds show that organic volatile nitriles, and particularly cyanoacetylene and cyanogen, are formed only in media rich in nitrogen. Those nitriles have been identified very recently in the atmosphere of Titan, and thus, data from such laboratory experiments may provide important indirect information on the organic chemistry occurring at the periphery of this satellite of Saturn. However, during these experiments, there is a continuous formation and accumulation of molecular hydrogen, which does not occur in the atmosphere of Titan, because of H2 escape. In order to reassess the data already available from this type of laboratory studies, experiments on CH4-N2 atmospheres, with and without H2 escape, have been recently performed. The influence of this parameter on the chemical evolution of the atmosphere and on the nature and relative quantities of organic compounds has been studied. After reviewing these experiments, implications of the obtained results on the organic chemistry at the periphery of Titan are discussed.

Chemical Phenomena↗
PubMed1987

Laboratory experiments in the study of the chemistry of the outer planets.

The investigation of chemical evolution of bodies in our solar system has, in the past, included observations, theoretical modeling, and laboratory simulations. Of these programs, the last one has been the most criticized due to the inherent difficulties in accurately recreating alien environments in the laboratory. Processes such as wall reactions and changes in chemistry due to difficulties in achieving realistic conditions of temperature, pressure, composition, and energy flux may yield results which are not truly representative of the systems being modeled. However, many laboratory studies have been done which have yielded data useful in planetary science. Gross simulations of atmospheric chemistry have placed constraints on the nature of complex molecules expected in planetary atmospheres. More precise studies of specific chemical processes have provided information about the sources and properties of product gases and aerosols. Determinations of basic properties such as spectral features and reaction rate constants yield data useful in the interpretation of observations and in computational modeling. Alone, and in conjunction with modeling, laboratory experiments will continue to be used to further our understanding of the outer solar system, and some experiments that need to be done are listed.

Aerosols↗
PubMed2006

H3+ cooling in primordial gas.

Simulations of the thermal and dynamical evolution of primordial gas typically focus on the role played by H2 cooling. H2 is the dominant coolant in low-density primordial gas and it is usually assumed that it remains dominant at high densities. However, H2 is not an effective coolant at high densities, owing to the low critical density at which it reaches local thermodynamic equilibrium and to the large opacities that develop in its emission lines. It is therefore important to quantify the contribution made to the cooling rate by emission from the other molecules and ions present in the gas. A particularly interesting candidate is the H3+ ion, which is known to be an effective coolant at high densities in planetary atmospheres. In this paper, we present results from simulations of the thermal and chemical evolution of gravitationally collapsing primordial gas, which include a detailed treatment of H3+ chemistry and an approximate treatment of H3+ cooling. We show that in most cases, the contribution from H3+ is too small to be important, but if a sufficiently strong ionizing background is present, then H3+ cooling may become significant.

Journal Article↗