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Results for “Scattering, Small Angle”

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PubMed2005

Persistence length of titin from rabbit skeletal muscles measured with scattering and microrheology techniques.

The persistence length of titin from rabbit skeletal muscles was measured using a combination of static and dynamic light scattering, and neutron small angle scattering. Values of persistence length in the range 9-16 nm were found for titin-II, which corresponds to mainly physiologically inelastic A-band part of the protein, and for a proteolytic fragment with 100-nm contour length from the physiologically elastic I-band part. The ratio of the hydrodynamic radius to the static radius of gyration indicates that the proteins obey Gaussian statistics typical of a flexible polymer in a -solvent. Furthermore, measurements of the flexibility as a function of temperature demonstrate that titin-II and the I-band titin fragment experience a similar denaturation process; unfolding begins at 318 K and proceeds in two stages: an initial gradual 50% change in persistence length is followed by a sharp unwinding transition at 338 K. Complementary microrheology (video particle tracking) measurements indicate that the viscoelasticity in dilute solution behaves according to the Flory/Fox model, providing a value of the radius of gyration for titin-II (63 +/- 1 nm) in agreement with static light scattering and small angle neutron scattering results.

Animals↗

PubMed1997

Assessment of the aggregation state of integral membrane proteins in reconstituted phospholipid vesicles using small angle neutron scattering.

The assessment of the physical size of integral membrane protein complexes has generally been limited to samples solubilized in non-ionic detergent, a process which may introduce artifacts of unknown scope and severity. A system has been developed that allows observation of the small angle scattering profile of an integral membrane protein while incorporated in small unilamellar phospholipid vesicles. Contrast matching of isotopically substituted phospholipid eliminates the contribution of the bilayer to the observed scattering, resulting in a profile dependent only on the structure of the individual membrane protein complexes and their spatial arrangement in the vesicle. After appropriate compensation for their spatial arrangement, information about the molecular mass and radius of gyration of the individual complexes can be obtained. The validity of the approach has been established using monomeric bacteriorhodopsin as a model system.

Bacteriorhodopsins↗

PubMed2006

Small-angle neutron scattering study of concentrated colloidal dispersions: the electrostatic/steric composite interactions between colloidal particles.

Small-angle neutron scattering was used to investigate the interactions in concentrated colloidal dispersions containing silica or polystyrene latex with adsorbed polyethyleneoxide (PEO). In these dispersions of charged particles, both electrostatic and steric repulsions are present. The PEO layer was made invisible to neutrons through contrast matching. The effect of the interparticle repulsion was clearly shown in the scattering spectra by the appearance of a peak at low Q. The effective potentials can be well described by the Hayter-Penfold/Yukawa (HPY) potential. In the silica dispersions studied, the layer thickness is small, hence the electrostatic potential dominates and the potential has a lower concentration dependence. In the dispersions of polystyrene latex, the adsorbed layer is thicker; consequently, the electrostatic potential dominates at low volume fraction (the potential has a lower concentration dependence), and the steric potential dominates at higher volume fraction (the potential has a higher concentration dependence). This study also suggests that when more than one potential is present the stronger one has a dominant influence in determining the structure factor. This finding makes it possible to describe the multicomponential interactions by a single function.

Journal Article↗

PubMed1988

Domain interaction in rabbit muscle pyruvate kinase. II. Small angle neutron scattering and computer simulation.

The effects of ligands on the structure of rabbit muscle pyruvate kinase were studied by small angle neutron scattering. The radius of gyration, RG, decreases by about 1 A in the presence of the substrate phosphoenolpyruvate, but increases by about the same magnitude in the presence of the allosteric inhibitor phenylalanine. With increasing pH or in the absence of Mg2+ and K+, the RG of pyruvate kinase increases. Hence, there is a 2-A difference in RG between two alternative conformations. Length distribution analysis indicates that, under all experimental conditions which increase the radius of gyration, there is a pronounced increase observed in the probability for interatomic distance between 80 and 110 A. These small angle neutron scattering results indicate a "contraction" and "expansion" of the enzyme when it transforms between its active and inactive forms. Using the alpha-carbon coordinates of crystalline cat muscle pyruvate kinase, a length distribution profile was calculated, and it matches the scattering profile of the inactive form. These observations are expected since the crystals were grown in the absence of divalent cations (Stuart, D. I., Levine, M., Muirhead, H., and Stammers, D. K. (1979) J. Mol. Biol. 134, 109-142). Hence, results from neutron scattering, x-ray crystallographic, and sedimentation studies (Oberfelder, R. W., Lee, L. L.-Y., and Lee, J.C. (1984) Biochemistry 23, 3813-3821) are totally consistent with each other. With the aid of computer modeling, the crystal structure has been manipulated in order to effect changes that are consistent with the conformational change described by the solution scattering data. The structural manipulation involves the rotation of the B domain relative to the A domain, leading to the closure of the cleft between these domains. These manipulations resulted in the generation of new sets of atomic (C-alpha) coordinates, which were utilized in calculations, the result of which compared favorably with the solution data.

Algorithms↗

PubMed2005

Detection of submicron-sized raft-like domains in membranes by small-angle neutron scattering.

Using coarse grained models of heterogeneous vesicles we demonstrate the potential for small-angle neutron scattering (SANS) to detect and distinguish between two different categories of lateral segregation: 1) unilamellar vesicles (ULV) containing a single domain and 2) the formation of several small domains or "clusters" (approximately 10 nm in radius) on a ULV. Exploiting the unique sensitivity of neutron scattering to differences between hydrogen and deuterium, we show that the liquid ordered (lo) DPPC-rich phase can be selectively labeled using chain deuterated dipalymitoyl phosphatidylcholine (dDPPC), which greatly facilitates the use of SANS to detect membrane domains. SANS experiments are then performed in order to detect and characterize, on nanometer length scales, lateral heterogeneities, or so-called "rafts", in approximately 30 nm radius low polydispersity ULV made up of ternary mixtures of phospholipids and cholesterol. For 1:1:1 DOPC:DPPC:cholesterol (DDC) ULV we find evidence for the formation of lateral heterogeneities on cooling below 30 degrees C. These heterogeneities do not appear when DOPC is replaced by SOPC. Fits to the experimental data using coarse grained models show that, at room temperature, DDC ULV each exhibit approximately 30 domains with average radii of approximately 10 nm.

1,2-Dipalmitoylphosphatidylcholine↗

PubMed2005

Structure of polymer micelles close to the solid interface. A grazing incidence small angle neutron scattering study.

Block copolymers are widely used in industry. For scientific interests their aqueous solutions offer a model system for the investigation of crystallisation as the macromolecules agglomerate for elevated concentrations into micelles, which crystallise when a critical volume fraction is reached. We report on grazing incidence small angle neutron scattering (GISANS) or near surface small angle neutron scattering (NS-SANS) as an experimental tool to investigate the micelle crystallisation close to interfaces with different chemical termination. We find that in general crystallization is suppressed at a repulsive surface and favoured at an attractive one. Furthermore we show that the crystallization close the interface can be controlled by the micelle stability, resulting from the different composition and length of the monomers. The effect of the interface is found more important for a high micelle stability, whereas for a low stability it is shadowed by adsorbed monomers.

Journal Article↗

PubMed1981

Small-angle multiple scattering and spatial resolution in charged particle tomography.

The formulae for the RMS scattering angle given by small-angle multiple-scattering theory are discussed and a correction to the standard Rossi formula is derived. Values of the correction factor are calculated for protons, alpha-particles and heavy ions; these results show that the correction is important for protons and alpha-particles but negligible for heavy ions with mass number 12-40. The values of the RMS scattering angle and the RMS lateral displacement are calculated for a proton beam passing through water. For protons the correction for energy loss in thick targets is even more important.

Alpha Particles↗

PubMed1994

The aggregation behavior of zinc-free insulin studied by small-angle neutron scattering.

The aggregation behavior of zinc-free insulin has been studied by small-angle neutron scattering as a function of pH and ionic strength of the solution. The pair distance distribution functions for the 12 samples have been obtained by indirect Fourier transformation. The results show that the diameter of the aggregates is 40 A at pH 11 and 10 mM NaCl, independent of the protein concentration. The largest diameter of about 120 A is found for pH 8, 100 mM NaCl, and a protein concentration of 10 mg/ml. Estimates of the pair distance distribution functions, free of inter-particle correlation effects, were obtained by an indirect Fourier transformation, omitting the data at small scattering vectors, which are influenced by these effects. By this procedure the weight-averaged molecular mass and the average radius of gyration were determined. These parameters vary from 1.3 times the monomer mass and 14 A, to 6.8 times the monomer mass and 31 A, respectively. The mass distribution between the oligomers was determined by a model based on the crystal structure of zinc-free insulin. The results from this model and the Fourier transformations have been compared to an equilibrium model recently introduced by Kadima et al. (1993). The neutron scattering results agree well with the predictions of this model except that broader mass distributions are suggested by neutron scattering.

Crystallization↗

PubMed1985

Small-angle neutron scattering study of lateral phase separation in dimyristoylphosphatidylcholine-cholesterol mixed membranes.

The small-angle neutron scattering (SANS) technique developed previously is used to study the lateral phase separation in dimyristoylphosphatidylcholine (DMPC)-cholesterol mixed vesicles in the L alpha (35 degrees C) and L beta' (7 degrees C) phase of DMPC. To increase the sensitivity of the previous method, we apply the so-called inverse contrast variation technique where contrast matching is performed at a constant H2O/D2O ratio by varying the ratio of DMPC with deuterated and protonated hydrocarbon chains. Phase boundaries can be determined to an accuracy of +/- 0.5 mol %. In parallel experiments phase separation in the L beta' phase was also studied by freeze-fracture electron microscopy. For DMPC in the L alpha phase complete miscibility is clearly established up to cholesterol molar fractions of xc = 0.14. Strong evidence is provided that this is also the case up to xc approximately equal to 0.45. Cholesterol is no longer soluble above this limit and precipitates as small crystallites. For the L beta' phase (7 degrees C) phase boundaries are clearly established at xc1 = 0.08 and xc2 = 0.24, and very strong evidence is provided for two additional boundaries at xc3 = 0.435 and xc4 approximately equal to 1.0. At 0 less than or equal to xc less than or equal to xc1 the mixture forms a tilted solid solution in both the L beta' and P beta' phase while at xc1 less than or equal to xc less than or equal to xc2 this phase coexists with a nontilted mixture containing 24 mol % cholesterol.(ABSTRACT TRUNCATED AT 250 WORDS)

Cholesterol↗

PubMed2005

Small-angle neutron scattering study of concentrated colloidal dispersions: the interparticle interactions between sterically stabilized particles.

Small-angle neutron scattering (SANS) was used to investigate the interparticle interactions in concentrated dispersions of colloidal silica stabilized either by steric or by electrostatic repulsive interactions. In 10 mM NaCl, an adsorbed PEO layer is required to prevent flocculation, and particles are stabilized by steric repulsions. The adsorbed layer was made invisible to neutrons by contrast matching with the aqueous continuous phase. Dispersions of the same particles at the same concentrations but in the absence of added salt and adsorbed PEO were also studied. In both cases, the SANS spectra of concentrated dispersions show a peak at low Q, which is due to interparticle interactions: a structure factor. The SANS data can be described rather well by a homogeneous spherical form factor and a structure factor based on the Hayter-Penfold/Yukawa potential model. The steric potential was compared to the electrostatic potential obtained by fitting the SANS data of the bare silica dispersions. The steric potential shows a greater dependence on the particle volume fraction, which we ascribe to the penetration and compression of the adsorbed PEO layer as the particles approach.

Journal Article↗

PubMed2005

Small-angle neutron scattering on a core-shell colloidal system: a contrast-variation study.

Small-angle neutron scattering (SANS) measurements are reported on a sterically stabilized, core-shell colloidal system using contrast variation. Aqueous dispersions of polystyrene particles bearing grafted poly(ethylene glycol) (PEG) have been studied over a large range of particle concentrations and two different solvent conditions for the PEG polymer. SANS data are analyzed quantitatively by modeling the particles as core-shell colloids. In a good solvent and under particle contrast conditions, an effective hard-sphere interaction captures excluded-volume interactions up to high concentrations. Contrast variation, through isotopic substitution of both the core and solvent, expedite a detailed study of the PEG layer, both in the dilute limit and as a function of the particle concentration. Upon diminishing the solvent quality, subtle changes in the PEG layer translate into attractions among particles of moderate magnitude.

Journal Article↗

PubMed2001

Droplet polydispersity and shape fluctuations in AOT [bis(2-ethylhexyl)sulfosuccinate sodium salt] microemulsions studied by contrast variation small-angle neutron scattering.

Microemulsions consisting of AOT water, and decane or iso-octane are studied in the region of the phase diagram where surfactant covered water droplets are formed. The polydispersity and shape fluctuations of the microemulsion droplets are determined and compared in the two different alkane types. Conductivity measurements show that there is a pronounced dependence of the temperature behavior of the microemulsion on the type of alkane used. In both cases the microemulsion droplets start to form larger aggregates when the temperature increases. But in the system with decane this aggregation temperature occurs at a temperature about 10 degrees C lower than in a similar system with iso-octane. Aggregation phenomena are avoided and the two systems are at approximately the same reduced temperature with respect to the aggregation temperature when the temperature of the AOT/D(2)O/decane microemulsion is 10 degrees C and the temperature of the AOT/D(2)O/iso-octane microemulsion is 20 degrees C. Contrast variation small-angle neutron scattering measurements are performed at these temperatures on systems with volume fractions of 5% D2O+AOT by varying the scattering length density of the alkane. The small-angle scattering for 11 different contrasts evenly distributed around the match points are studied for each sample. The scattering data for the different contrasts are analyzed using a molecular constrained model for ellipsoidal droplets of water covered by AOT, interacting as polydisperse hard spheres. All contrasts are fitted simultaneously by taking the different contrast factors into account. The analysis show that at the same reduced temperature with respect to the aggregation temperature the droplet size, polydispersity index, the size of the shape fluctuations are similar in the two systems. A polydispersity index (sigma/R of the Gaussian size distribution) of 16% and an average axis ratio of the droplets of 1.56 is found in the AOT/D(2)O/decane microemulsion. In the AOT/D(2)O/iso-octane system the polydispersity index is also 16% while the axis ratio is 1.72. The bending elastic constant kappa and the Gaussian bending elastic constant kappa; can be estimated from these numbers. For AOT/D(2)O/decane we find kappa=3.4 k(B)T and kappa=-5.9 k(B)T and for AOT/D(2)O/iso-octane we find kappa=2.35k(B)T and kappa=-3.8k(B)T, where k(B) is the Boltzmann constant and T is the absolute temperature.

Journal Article↗

PubMed1997

Progressive cyclic nucleotide-induced conformational changes in the cGMP-dependent protein kinase studied by small angle X-ray scattering in solution.

Small angle scattering data from bovine lung type Ialpha cGMP-dependent protein kinase (PKG) in the absence of cGMP show the protein to have a highly asymmetric structure with a radius of gyration (Rg) of 45 A and a maximum linear dimension (dmax) of 165 A. The addition of cGMP induces a marked conformational change in PKG. The Rg and dmax increase 25-30%, and the protein's mass moves further away from the center of mass; this results in an even more asymmetric structure. Fourier transform infrared spectroscopy data suggest that the conformational change induced by cGMP binding is primarily due to a topographical movement of the structural domains of PKG rather than to secondary structural changes within one or more of the individual domains. Each monomer of the dimeric PKG contains one high and one low affinity cGMP-binding site. A prominent increase in the asymmetry of PKG occurs with binding to high affinity cGMP-binding sites alone, but the full domain movements require the binding to both sets of sites. These conformational changes occurring in PKG with the progressive binding of cGMP to both sets of cGMP-binding sites correlate with past data, which have indicated that cGMP binding to both sets of sites is required for the full activation of the enzyme. These results provide the first quantitative measurement of the overall PKG structure, as well as an assessment of the structural events that accompany the activation of a protein kinase upon binding a small molecular weight ligand.

Animals↗

PubMed2006

Time-resolved small-angle neutron scattering during heat-induced fibril formation from bovine beta-lactoglobulin.

We study in situ the kinetics of heat-induced fibrilar aggregation of bovine beta-lactoglobulin at pH 2.0 and 80 degrees C for the first time by time-resolved small-angle neutron scattering. A simple model for the scattering from a mixture of monodisperse charged spheres (monomeric beta-lactoglobulin) interacting via a screened electrostatic repulsion and noninteracting long cylinders (protein fibrils) is used to describe the data. The experimental data are fitted to the model and the concentration of the monomeric protein and the protein incorporated in fibrils are obtained as adjustable parameters. Thus, a simple physical model allows the determination of realistic kinetic parameters during fibrilar protein aggregation. This result constitutes an important step in understanding the process of irreversible fibrilar aggregation of proteins.

Animals↗

PubMed2001

Characterization of the denatured states distribution of neocarzinostatin by small-angle neutron scattering and differential scanning calorimetry.

The denatured states of a small globular protein, apo-neocarzinostatin (NCS), have been characterized using several techniques. Structural properties were investigated by optical spectroscopy techniques and small-angle neutron scattering (SANS), as a function of guanidinium chloride (GdmCl) concentration. SANS experiments show that in heavy water, the protein keeps its native size at GdmCl concentrations below 2.5 M. A sharp transition occurs at about 3.6 M GdmCl, and NCS behaves like an excluded volume chain above 5 M. The same behavior is observed in deuterated buffer by fluorescence and circular dichroism measurements. For the H(2)O buffer, the transition occurs with lower concentration of denaturant, the shift being about 0.6 M. 8-Anilino-1-naphthalenesulfonate (ANS) was used as a hydrophobic fluorescent probe for studying the early stages of protein unfolding. Protein denaturation modifies the fluorescence intensity of ANS, a maximum of intensity being detected close to 2 M GdmCl in hydrogenated buffer, which shows the existence of at least one intermediate state populated at the beginning of the unfolding pathway. Differential scanning calorimetry (DSC) was used to obtain thermodynamic values for NCS denaturation. The melting curves recorded between 20 and 90 degrees C in the presence of various GdmCl concentrations (0-3 M) cannot be explained by a simple two-state model. Altogether, the data presented in this paper suggest that before unfolding the protein explores a distribution of states which is centered around compact states at denaturant concentrations below 2 M in H(2)O, and then shifts to less structured states by increasing denaturant concentrations.

Anilino Naphthalenesulfonates↗

PubMed1996

Solution conformations of pectin polysaccharides: determination of chain characteristics by small angle neutron scattering, viscometry, and molecular modeling.

The solution behavior of pectin polysaccharides has been investigated by small angle neutron scattering (SANS), viscosimetric, and molecular modeling studies. The samples used in the experimental study were obtained from apple and citrus and had degrees of methylation ranging from 28 to 73%, with a rhamnose content lying between 0.6 and 2.2%. Persistence lengths, derived from intrinsic viscosity measurements, ranged from 59 to 126 A, whereas those derived by SANS were between 45 and 75 A. These values correspond to 10-17 monomer units. The modeling simulations were performed for both homogalacturonan itself and homogalacturonan carrying various degrees of rhamnose inserts (rhamnogalacturonan). This required the evaluation of the accessible conformational space for the eight disaccharides that represent the constituent repeating segments of the homogalacturonan and rhamnogalacturonan polysaccharides. For each dimer, complete conformational analysis was accomplished using the flexible residue method of the MM3 molecular mechanics procedure and the results used to access the configurational statistics of representative pectic polysaccharide chains. For homogalacturonan, an extended chain conformation having a persistence length of 135 A (corresponding to 30 monomers) was predicted. The inclusion of varying amounts of rhamnose units (5-25%) in the model in strict alternating sequence with galacturonate residues (equivalent to the rhamnogalacturonan "hairy region" chains) only slightly reduced the calculated persistence length. The extended overall chain conformation remained relatively unchanged as a consequence of the self-cancellation of the kinking effects of successive paired rhamnose units.

Carbohydrate Conformation↗

PubMed1997

A small-angle neutron scattering study of gamma-crystallins near their isoelectric point.

In this paper, a small-angle neutron scattering study of gammaII-crystallins near their isoelectric point is presented. The experiments were carried out using protein concentrations of 5.7-85.7 mg/ml at temperatures in the range 11 -60 degrees C. The experimental data were analyzed using an ellipsoidal model for intraparticle correlations and the mean spherical approximation for interparticle correlations. Our studies revealed that gammaII-crystallins have a thick hydration layer, which is possibly due to the special arrangement of polar and ionic groups on their surface. The temperature scan shows that, as a result of relatively strong attractive forces, clusters of two, three, or higher oligomers are present below 20 degrees C. Our results suggest that protein clusters, with a distinctive hydration layer, form a protein-rich phase that separates from a protein-lean phase as the temperature is decreased below some threshold value.

Animals↗

PubMed1977

Small angle neutron scattering studies of chromatin subunits in solution.

Neutron scattering studies have been performed on dilute solutions of the fundamental subunit of chromatin, the nucleosome. The subunits contain approximately 195 base paris (bp) of DNA and histones H2A, H2B, H3, and H4. Measurements of the small angle scattering curves in various H2O/D2O solvents allow the contrast dependence of the radius of gyration of the subunits to be examined and give the mean scattering density of the particle. Further application of contrast variation to the higher angle scatter curves allows the contributions from the shape and internal structure of the subunits to be analyzed separately. From these results, we are able to propose a spherically averaged structure with most of the histones closely packed into a core of radius 3.2 nm surrounded by a loosely packed DNA-rich shell of 2.0 nm thickness resulting in a particle of 5.2 nm average radius. Model calculations for ellipsoids show that the outer shape of the subunit must have an axial ratio between 0.5 and 1.4 but is probably best described by more spherical particle. These results are correlated with the diffraction from chromatin films to provide an explanation for some of the diffraction rings.

Animals↗