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At least 271 records · Page 15Linked to original sources
PubMed1999

Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community.

We used a culture-independent approach, namely, thermal gradient gel electrophoresis (TGGE) analysis of ribosomal sequences amplified directly from community DNA, to determine changes in the structure of the microbial community following phenol shocks in the highly complex activated sludge ecosystem. Parallel experimental model sewage plants were given shock loads of chlorinated and methylated phenols and simultaneously were inoculated (i) with a genetically engineered microorganism (GEM) able to degrade the added substituted phenols or (ii) with the nonengineered parental strain. The sludge community DNA was extracted, and 16S rDNA was amplified and analyzed by TGGE. To allow quantitative analysis of TGGE banding patterns, they were normalized to an external standard. The samples were then compared with each other for similarity by using the coefficient of Dice. The Shannon index of diversity, H, was calculated for each sludge sample, which made it possible to determine changes in community diversity. We observed a breakdown in community structure following shock loads of phenols by a decrease in the Shannon index of diversity from 1.13 to 0.22 in the noninoculated system. Inoculation with the GEM (Pseudomonas sp. strain B13 SN45RE) effectively protected the microbial community, as indicated by the maintenance of a high diversity throughout the shock load experiment (H decreased from 1.03 to only 0.82). Inoculation with the nonengineered parental strain, Pseudomonas sp. strain B13, did not protect the microbial community from being severely disturbed; H decreased from 1.22 to 0.46 for a 3-chlorophenol-4-methylphenol shock and from 1.03 to 0.70 for a 4-chlorophenol-4-methylphenol shock. The catabolic trait present in the GEM allowed for bioprotection of the activated sludge community from breakdown caused by toxic shock loading. In-depth TGGE analysis with similarity and diversity algorithms proved to be a very sensitive tool to monitor changes in the structure of the activated sludge microbial community, ranging from subtle shifts during adaptation to laboratory conditions to complete collapse following pollutant shocks.

Bacteria↗
PubMed2003

Oxygen dynamics in petroleum hydrocarbon contaminated salt marsh soils: III. A rate model.

A model describing oxygen dynamics due to crude oil biodegradation under flooded conditions in saltwater wetlands was developed. The model is composed of three non-linear ordinary differential equations (ODEs) that simulate oxygen uptake, cell growth, and oil degradation simultaneously. The model equations were solved by using a stiff version of ODE solver, ODEPACK, which employs a multistep method and allows the change of step sizes and order of methods (ie., Gear's method). The results of model simulation were compared with experimental data obtained from a fully aerated microcosm study. The results of model simulation indicate that dissolved oxygen concentration in the overlying water rapidly depleted below 3 mg l(-1) unless the reaeration coefficient was higher than 2.0 day(-1). Active aerobic biodegradation of crude oil did not occur under flooded conditions because (i) dissolved oxygen is rapidly depleted, (ii) reaeration is not sufficient enough to replenish dissolved oxygen and (iii) the oil dissolution rate constant decreases over time. The model may lead to better understanding of oxygen demand for a long bioremediation period. The results of this study may be applicable for the establishment of an engineered bioremediation strategy.

Biodegradation, Environmental↗
PubMed2006

Evaluating the risk to aquatic ecosystems posed by leachate from tire shred fill in roads using toxicity tests, toxicity identification evaluations, and groundwater modeling.

The risk to adjacent aquatic systems posed by leachates from scrap tires used in engineering applications has not been characterized adequately. Toxicity testing, toxicity identification evaluation (TIE), and groundwater modeling were used to determine the circumstances under which tire shreds could be used as roadbed fill with negligible risk to aquatic organisms in adjacent water bodies. Elevated levels of iron, manganese, and several other chemicals were found in tire shred leachates. However, chronic toxicity tests with Ceriodaphnia dubia and fathead minnows (Pimephales promelas) showed no adverse effects caused by leachates collected from tire shreds installed above the water table. Exposure to leachates collected from tire shreds installed below the water table resulted in significant reductions to both survival and reproduction in C. dubia. The TIE results indicated that exposure to soluble metals (likely ferrous iron primarily) and the formation of iron hydroxide precipitates on this invertebrate species likely were the causes of the observed effects. The available chemistry data show that iron concentrations in the affected groundwater decreased substantially within a short distance (0.61 m) downgradient of tire shred fill. Based on geochemical modeling, the use of tire shreds in applications below the water table is appropriate in settings where dissolved oxygen is greater than 2.0 mg/L, pH is greater than 5.8, and a downgradient buffer of approximately 3.0 m exists between the fill and the surface water. For settings with lower dissolved oxygen concentrations or lower pH, results of groundwater modeling indicate that a greater buffer distance (approximately 11 m) is needed to dilute the leachate to nontoxic levels under various soil and groundwater conditions solely through advection and dispersion processes.

Animals↗
PubMed2005

Iron, phytoplankton growth, and the carbon cycle.

Iron is an essential nutrient for all living organisms. Iron is required for the synthesis of chlorophyll and of several photosynthetic electron transport proteins and for the reduction of CO2, SO4(2-), and NO3(-) during the photosynthetic production of organic compounds. Iron concentrations in vast areas of the ocean are very low (<1 nM) due to the low solubility of iron in oxic seawater. Low iron concentrations have been shown to limit primary production rates, biomass accumulation, and ecosystem structure in a variety of open-ocean environments, including the equatorial Pacific, the subarctic Pacific and the Southern Ocean and even in some coastal areas. Oceanic primary production, the transfer of carbon dioxide into organic carbon by photosynthetic plankton (phytoplankton), is one process by which atmospheric CO2 can be transferred to the deep ocean and sequestered for long periods of time. Accordingly, iron limitation of primary producers likely plays a major role in the global carbon cycle. It has been suggested that variations in oceanic primary productivity, spurred by changes in the deposition of iron in atmospheric dust, control atmospheric CO2 concentrations, and hence global climate, over glacial-interglacial timescales. A contemporary application of this "iron hypothesis" promotes the large-scale iron fertilization of ocean regions as a means of enhancing the ability of the ocean to store anthropogenic CO2 and mitigate 21st century climate change. Recent in situ iron enrichment experiments in the HNLC regions, however, cast doubt on the efficacy and advisability of iron fertilization schemes. The experiments have confirmed the role of iron in regulating primary productivity, but resulted in only small carbon export fluxes to the depths necessary for long-term sequestration. Above all, these experiments and other studies of iron biogeochemistry over the last two decades have begun to illustrate the great complexity of the ocean system. Attempts to engineer this system are likely to provoke a similarly complex, unpredictable response.

Carbon↗
PubMed1996

When Biologists and Engineers Collide: Habitat Conservation Planning in the Middle of Urbanized Development

/ The City of Austin, Texas, is one of the fastest growing metropolitan areas in the United States. It is also in one of the most biologically diverse terrestrial ecosystems in the world: the Balcones Canyonlands. Five cave invertebrates and two species of birds that inhabit the area are listed as threatened or endangered, two species of plants are candidates for listing, several others are considered rare and of concern, and a species of the salamander has also been proposed for listing. A habitat conservation plan, of "national significance . . ." according to Secretary of Interior Bruce Babbit (Haurwitz 1996), has been under development for the last several years to conserve those endangered species through a 2400-ha system of preserves and to allow development to continue in more than 162,000 ha of surrounding area. The preserve system, comprising several units ranging in size from less than a hundred to several thousand hectares, would be bordered in many instances by developed areas. Development and maintenance of the infrastructure necessary for new and existing development, both commercial and residential, could have negated the biological value of the preserves (e.g., power-line corridors, water-treatment pipelines and facilities). The challenge of bringing this plan to fruition illustrates the complex biological, technical, and sociological context within which habitat conservation planning may occur. Resolving resource use conflicts of this nature have several commonalities that overarch these contexts. If recognized and addressed, one may move easily and foster positive results. These commonalities can be expressed as principles such as: relying on scientists to recognize, but not solve problems; acting before a scientific consensus is achieved; including human motivation and responses as part of the system to be studied and managed; and confronting uncertainty.KEY WORDS: Endangered species; Habitat conservation plan; Resource conflicts; Biologists; Engineers

Journal Article↗
PubMed1987

Role of motility, chemotaxis, and adhesion in microbial ecology.

This review emphasized the implications of recent data pertaining to the role that motility, chemotaxis, and adhesion play in microbial ecology. Some of these processes appear to promote colonization by allowing certain organisms to selectively "seek out" nutrients or sites of colonization. For example, chemotaxis to NO3- and NO2- may provide pseudomonads with such a strong competitive mechanism that it allows this group of bacteria to outcompete other members of the soil microbiota for these chemicals. Likewise, chemotaxis also allows other bacteria to enter and colonize the mucus gel lining the intestinal epithelium and thereby resist physical removal from the gut. On the other hand, the understanding of such mechanisms offers important new possibilities for the deliberate control of microorganisms for the benefit of man. To that end, much remains to be done before a thorough understanding of the ecology of the microflora of any ecosystem can be accomplished. It is hoped that this review will stimulate further work in this area, as well as to lead to collaboration between engineers and microbiologists, which should lead to fruitful and exciting research in the future.

Animals↗
PubMed1992

The implantation of life on Mars: feasibility and motivation.

Environmental conditions on Mars are extremely hostile, and would be destructive to any organisms which might arrive there unprotected to-day. However, it is a biocompatible planet. Its unalterable astrophysical parameters would allow the maintenance of a much thicker, warmer carbon dioxide atmosphere than that which currently exists. Though very cold (averaging about -60 degrees C), highly oxidizing and desiccated, Mars may possess substantial quantities of the materials needed to support life--in particular, water and carbon dioxide. A general scenario for implanting life on Mars would include three main phases: (1) robotic and human exploration to determine whether sufficiently large and accessible volatile inventories are available; (2) planetary engineering designed to warm the planet, release liquid water and produce a thick carbon dioxide atmosphere; and (3) if no indigenous Martian organisms emerge as liquid water becomes available, a program of biological engineering designed to construct and implant pioneering microbial communities able to proliferate in the newly clement, though still anaerobic, Martian environment. The process of establishing an ecosystem, or biosphere, on a lifeless planet is best termed 'ecopoiesis.' This new word, derived from Greek, means 'the making of an abode for life.' It is by no means clear whether ecopoiesis on Mars is scientifically possible or technologically achievable. Thus we urge that it be one of the objectives of space research during the next century to assess the feasibility of ecopoiesis on Mars.

Atmosphere↗
PubMed2006

[Impacts of farmland consolidation on farmland landscape].

Farmland consolidation is the act of regulating, improving, and comprehensively renovating the structure, quality, and layout of field, water, road, forestry, and village in the countryside in a certain area by means of administration, economy, law, and engineering techniques according to the goal and usage defined by land use planning, so as to improve farmland use rate and its output rate, to increase farmland area, and to achieve better productive, living, and ecological environment. Recently, farmland consolidation has been carried out all over the country, especially in its economy-developed regions. But, unscientific planning and unsuitable farmland consolidation engineering have negative effects on field ecological system. In this paper, based on the technology of GIS and RS, the basic theories and methods of landscape ecology and a compositive grading method were applied to analysis the dynamics of farmland landscape fragmentation in Tongxiang county. The results showed that the farmland landscape fragmentation in this county was strongly affected by consolidation. More attention should be paid to the protection of farmland landscape during consolidation, and to avoid or decrease the negative effects resulted from unscientific planning and unsuitable farmland consolidation engineering.

Biomass↗
PubMed2002

[Diversity of the microorganisms degrading aromatic hydrocarbons].

Aromatic hydrocarbons are biological xenobiotics. Indigenous microorganism groups turn from being unfamiliar with into active response to environmental changes by their adaptability to environment. There are changes in their genetic background, and then, the biodiversity turns into being. This paper reviewed the microorganism groups resources, biocharacters, genetic background, evolvement and their adaptability to environment; described the genetic information, expression and regulatory for some species in detail; and pointed out that the degradation of aromatic hydrocarbons depended mainly on new microorganisms formed by genetic engineering and on their highly efficient metabolic regulatory.

Bacteria↗
PubMed2000

Marine biodiversity and ecosystem services: an elusive link.

Efforts to test the hypothesised positive link between ecosystem services and functions and biodiversity are increasing in order to forecast the consequences of the present erosion of biodiversity on ecosystem functions and to provide an additional basis for the conservation of biodiversity. These efforts have been, however, modest in marine ecosystems. An examination of seagrass communities, which are simple assemblages with a limited membership of about 50 species worldwide and <12 species in any one community, provides, however, strong evidence for the existence of such positive link between species richness and ecosystem functions. Ecosystem functions are, however, dependent on the particular membership of the community, rather that its number, for the functions are species-specific properties. Yet evidence, is provided, that an increasing species richness should be, on average, linked to an increase in the functional repertoire present in the community, will lead to a more efficient use of resources and a greater capacity to ensure the sustainability of ecosystem functions under disturbance or ecosystem change. Closer examination indicates that the functional variability of mixed-species seagrass assemblages is correlated to the variability in species size, whereas species of similar size tend to show similar functional capacities and, therefore, a greater degree of functional redundancy. In addition, the demonstration of positive interactions in seagrass communities, which are also dependent on the presence of engineering species in the community that facilitate the growth of other species, provides increasing grounds to expect an enhanced functional performance of mixed communities over that expected from a simple additive contribution of the community members. Multispecific communities also hold, within the functional repertoire they contain, many unrealised functional potentials that may prove instrumental to ensure the sustainability of ecosystem functions in the presence of disturbance or a changing environment. The arguments offered, illustrated for the comparatively simple seagrass communities, provide strong reasons to expect a strong - if difficult to test experimentally - positive relationship between species diversity and the functions of marine ecosystems and, thereby, the services they yield to humanity.

Journal Article↗
PubMed1992

Intergeneric natural plasmid transformation between E. coli and a marine Vibrio species.

Natural transformation is the mechanism of procaryotic gene transfer that involves the uptake and expression of genetic information encoded in extracellular DNA. This process has been regarded as a mechanism to transfer genes (primarily chromosomal markers) between closely related strains or species. Here we demonstrate the cell-contact-dependent transfer of a non-conjugative plasmid from a laboratory E. coli strain to a marine Vibrio species, the first report of intergeneric natural plasmid transformation involving a marine bacterium. The nucleic acid synthesis inhibitors nalidixic acid and rifampicin inhibited the ability of the E. coli to function as a donor. However, dead cells also served as efficient donors. There was an obligate requirement for cell contact. No transfer occurred in the presence of DNase I, when donors and recipients were separated by a 0.2-micron filter, or when spent medium alone was used as a source of transforming DNA. These results indicate that contact-mediated intergeneric plasmid exchange can occur in the absence of detectable viable donor cells and that small non-conjugative plasmids can be spread through heterogeneous microbial communities by a process previously not recognized, natural plasmid transformation. These findings are important in the assessment of genetic risk to the environment, particularly from wastewater treatment systems and the use of genetically engineered organisms in the environment.

Bacterial Adhesion↗
PubMed1993

Forests and forestry: radiation protection measures with special reference to the Chernobyl accident zone.

A large proportion of the area contaminated by the Chernobyl accident in the former USSR is forested and has presented unique problems when considering appropriate post-contamination management and clean-up techniques. These problems are related to the forest's role as both a source and sink for radioactive contamination. Although it has been suggested that resuspension from forested areas may provide a secondary source of contamination to adjacent land, data collected after the Kyshtym and Chernobyl accidents suggest that forest ecosystems may also be effective in limiting the further spread of contamination away from the point of initial deposition and that this effect will increase over time. Such evidence serves to highlight the importance of these ecosystems in influencing the behaviour of radionuclides immediately after their release to the environment. Management practices for forested areas adopted since 1986 are described and a critical appraisal is presented of engineering-based countermeasures implemented over the initial post-accident period. These were intended to remove large quantities of contaminated materials from the forest environment. However, it is suggested that the natural processes of self-decontamination of trees and forest floor litter layers are sufficiently rapid and efficient to necessitate radical alterations to the technology based approaches adopted in the first 2 years after the Chernobyl accident.

Accidents↗
PubMed1994

Contribution of the Global Regulator Gene gacA to Persistence and Dissemination of Pseudomonas fluorescens Biocontrol Strain CHA0 Introduced into Soil Microcosms.

Structural and regulatory genes involved in the synthesis of antimicrobial metabolites are essential for the biocontrol activity of fluorescent pseudomonads and, in principle, amenable to genetic engineering for strain improvement. An eventual large-scale release of such bacteria raises the question of whether such genes also contribute to the persistence and dissemination of the bacteria in soil ecosystems. Pseudomonas fluorescens wild-type strain CHA0 protects plants against a variety of fungal diseases and produces several antimicrobial metabolites. The regulatory gene gacA globally controls antibiotic production and is crucial for disease suppression in CHA0. This gene also regulates the production of extracellular protease and phospholipase. The contribution of gacA to survival and vertical translocation of CHA0 in soil microcosms of increasing complexity was studied in coinoculation experiments with the wild type and a gacA mutant which lacks antibiotics and some exoenzymes. Both strains were marked with spontaneous resistance to rifampin. In a closed system with sterile soil, strain CHA0 and the gacA mutant multiplied for several weeks, whereas these strains declined exponentially in nonsterile soil of different Swiss origins. The gacA mutant was less persistent in nonrhizosphere raw soil than was the wild type, but no competitive disadvantage when colonizing the rhizosphere and roots of wheat was found in the particular soil type and during the period studied. Vertical translocation was assessed after strains had been applied to undisturbed, long (60-cm) or short (20-cm) soil columns, both planted with wheat. A smaller number of cells of the gacA mutant than of the wild type were detected in the percolated water and in different depths of the soil column. Single-strain inoculation gave similar results in all microcosms tested. We conclude that mutation in a single regulatory gene involved in antibiotic and exoenzyme synthesis can affect the survival of P. fluorescens more profoundly in unplanted soil than in the rhizosphere.

Journal Article↗
PubMed2000

Artificial biospheres as a model for global ecology on planet Earth.

Artificial biospheres of the scale and complexity of Biosphere 2 can only work with coordinated rigorous design at each level of ecology: biospheres, biomes, bioregions, ecosystems, communities, patches, phases, physical-chemical functions, guilds, populations, organisms, and cells (both eucaryotic and procaryotic). This article reviews these theoretical concepts and provides examples of how this structure was applied to the design and development of Biosphere 2. In addition to this ecological engineering design, the addition of humans as inhabitants in the closed system required design of ethnological patterns and of technical and cybernetic systems for meeting specifically human requirements of labor efficiency, climate, nutrition, wastewater recycle, and pure air and water. Ecological levels of biospheric complexity can be directly applied to studies of the Earth's biosphere and, in fact, must be used to understand complex biospheric processes.

Animals↗
PubMed2002

[Ecological restoration technologies for mined lands: a review].

Mining activities usually cause catastrophic and extensive environmental changes, and eventually cause major damages to the whole ecosystem. The natural restoration for mine lands and tailings is a very slow process, and even can hardly reach their original states. Therefore, how to develop rapid and efficient approaches to accelerate restoration of mined lands has been highlighted by restorationists and environmental engineers during the past two decades. Almost all studies in this field indicate that the major problems come from soils: such as high metal concentrations, extremely strong acidity resulting from oxidation of pyrite, and poor fertility. Replacement of topsoil is therefore regarded as the most efficient method to alleviate adverse conditions of substrates; if this method is not available, other alternatives with lime, fertilizers, organic manures, garbage, mining wastes, and others will be applicable. In the aspect of using plants, species with strong resistance and rapid growth, like grasses and herbaceous legume, are always the first choice. If utilizing plants for the purpose of phytoremediation, species that are capable of accumulating exceptionally high concentrations of phytotoxic metals and of course, have a huge biomass, are preferably considered. No matter what type of ecosystem a mined land is restored or reclaimed to, an evaluation on whether it is a successful restoration or reclamation should be given. However, more practical, simple, and universal evaluation methods as well as more cost-effective, and operation-easy restoration techniques are still waiting to be developed. A set of artificial restoration methods that can be widely applied was summarized, and a discussion on the advantage and disadvantage of several evaluation systems was conducted in this review.

Ecosystem↗
PubMed2004

Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology.

Recent advances in the estimation of prokaryotic diversity have brought us insight into two questions: what is the extent of prokaryotic diversity, and perhaps more importantly, why bother finding out. In this review, we highlight the insights about the extent of diversity that may be gained by considering patterns that occur, or are likely to occur, in the relative abundance of prokaryotic taxa. We posit that global reservoirs of diversity are an important driving force behind patterns in localised diversity seen in leaves, intestines and wastewater treatment reactors. Thus, where the reservoir community is very large and relatively even, chance alone will prevent physically identical communities from having the same, or sometimes even stable, communities. By contrast, communities that tend to be similar (even when not physically identical) and stable are observed where the source diversity is low. Thus the relationship between structure and function in a community can only be understood, predicted and engineered through an understanding of the source of diversity from which the community is drawn.

Ecology↗