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Electric field induced order reconstruction in a nematic cell.

We have experimentally observed the biaxial switching between two topologically distinct textures of a nematic liquid crystal cell submitted to a strong electric field. The effect is deduced from optical and electrical measurements across the cell. Above a static threshold, a bulk order reconstruction is observed, where the final nematic orientation in the centre becomes perpendicular to its initial one, inducing a total pi change of orientation across the cell. Using short electric field pulses, a higher dynamical threshold is observed. These experiments are explained by a Landau-de Gennes-Khalatnikov model. The threshold implies the local exchange of two eigenvalues of the nematic order tensor through intermediate biaxial states. The onset of the effect in a thin splay-bend wall decreases the static threshold by almost an order of magnitude. The model explains reasonably well the static and dynamic measurements within the present description of nematic biaxiality.

Electricity↗

Correlates of unhealthy weight-control behaviors among adolescents: implications for prevention programs.

This study aimed to identify correlates of unhealthy weight-control behaviors in adolescents to guide the development of programs aimed at the primary prevention of disordered eating. A model explaining unhealthy weight-control behaviors was tested among 4,746 adolescents using structural equation modeling. Models fit the data well and explained 76% of the variance in unhealthy weight-control behaviors among girls and 63% among boys. Weight-body concerns were a strong correlate of unhealthy weight-control behaviors in both girls and boys. Models also emphasized the importance of weight-specific social norms within the adolescent's proximal environment. Findings suggest the importance of addressing weight-body concerns within prevention programs and extending interventions beyond classroom settings to ensure changes in weight-related norms among peer groups and family members.

Adolescent↗

Genetic control of cell intercalation during tracheal morphogenesis in Drosophila.

BACKGROUND: Branching morphogenesis transforms an epithelial sheet into a tubular network with distinct features regarding the length and diameter of individual tubes. Branching is controlled by several signaling pathways, but the molecular consequences of these pathways in the responding cells are poorly understood. RESULTS: We have undertaken a detailed characterization of cell rearrangements during tracheal branching morphogenesis in Drosophila embryos with a GFP fusion protein labeling the adherens junctions (AJs) and high-resolution live imaging. To analyze the branching process at the cellular level, we further developed an imaging approach that allows us to follow single cells during the branching process. We find that controlled cell intercalation, which requires extensive AJ remodeling, is key to the formation of tracheal branches of different cellular complexities. In particular, most branches consist of tubes with individual cells wrapped around the lumen. These branches form through cell intercalation, which requires the transformation of most of the initial intercellular AJs into autocellular AJs. We propose a step-wise model explaining how this AJ remodeling occurs and use this model to better understand defects in various mutants. We find that Dpp and Wnt signaling control cell intercalation by regulating the expression of Spalt, a zinc finger transcription factor; Spalt inhibits intercalation, leading to the formation of large, multicellular tubes. CONCLUSION: Tracheal morphogenesis is regulated by an interplay of different signaling systems that control cell migration and cell intercalation, respectively. Only the combined action of these signaling systems allows efficient branch elongation and the formation of morphologically distinct branches.

Adherens Junctions↗

Buffering processes in a boreal dissolved organic carbon-rich stream during experimental acidification.

The role of organic acids on surface water acidity as well as their buffering during anthropogenic acidification and subsequent recovery was studied in a field experiment on a total organic carbon (TOC)-rich stream draining the Svartberget catchment in northern Sweden. H(2)SO(4) was added to the stream to increase SO(4)(2-) concentration by 90 microeq l(-1) for 30 h. About 60% of the added H(+) was buffered by protonation of organic acids, another 20% was buffered by base cations released from the surface of the stream channel and only ca. 20% of the added acid remained unbuffered. TOC concentrations (27 mg l(-1)), and site density of carboxylic groups--8.6 microeq (mg TOC)(-1)--remained stable during the experiment. Two models of organic acid dissociation (a triprotic model and a monoprotic pH-dependent pKa model) were fitted to the experimental results. These models explained the observed variations in organic anions, but the model parameters were quite different from those reported by studies in Northern America and Central Europe. This experiment had substantially more buffering effect of TOC between pH 4.4 and 5.3, which is an environmentally important pH range.

Journal Article↗

The validity of analyses testing the etiology of comorbidity between two disorders: comparisons of disorder prevalences in families.

Klein and Riso proposed several alternative models explaining the causes of comorbidity between two disorders (KR models). For each comorbidity model, they also presented a set of predictions for comparing the prevalence of disorder A-only, disorder B-only, and disorder AB (i.e., both disorders) among the relatives of probands with A-only, B-only, AB and controls (i.e., the KR predictions). Neale and Kendler provided the quantitative expectations for these prevalences (i.e., the NK models) and suggested biometric model fitting as an alternative way of testing comorbidity models. Neale and Kendler also suggested that the KR predictions have limited use because variations in the model parameters may lead to different predictions. We tested the KR predictions on two sets of data simulated under the assumptions of the KR/NK models. The results predicted by Klein and Riso and the results derived from the simulated datasets matched in most cases, but there were several notable discrepancies between the two sets of results. First, these discrepancies may be due to variations in the model parameters although the KR predictions are valid tests of the model for some model parameter sets. Second, several KR predictions may not be valid because they do not consider the necessary conditions for the diagnosis of A-only and B-only or alternative routes to comorbidity that are not hypothesized in their comorbidity model, including the fact that some comorbid cases will result by chance in all comorbidity models.

Comorbidity↗

Structure-function relationships of thrombin based on the computer-generated three-dimensional model of the B chain of bovine thrombin.

The advent of sophisticated computer graphics systems that permit the representation of macromolecular structure has made it possible to examine protein structure in detail. We have used one aspect of this technology to develop a model of thrombin. The model is based on structural and functional similarities this enzyme exhibits with respect to proteins found in the family of serine proteinases. This review has covered interpretations of the structure of the model based on analyses of data that had been collected before and after the model was developed. On one hand, the conceptualization of primary and secondary features in the model of the active site of thrombin has for the most part been preceded by data from experiments on the interaction of thrombin with naturally occurring substrates and inhibitors. The features of the model explain these data adequately. On the other hand, the model has been more recently used in an interactive way to derive information about the bioregulatory aspects of thrombin. The realization that the amino-terminus portion of the cyanogen-bromide fragment was probably not part of the chemotactic activity, because it was probably internalized in the native protein, has suggested that synthetic analogs should focus more on the carboxyterminus of the peptide. It is hoped that in the future the model will continue to serve more in this function and that it can be used to explore further other aspects about the structural and functional relationships of this enzyme.

Amino Acid Sequence↗

A model of human knee ligaments in the sagittal plane. Part 2: Fibre recruitment under load.

A mathematical model of the knee ligaments in the sagittal plane is used to study the forces in the cruciate and collateral ligaments produced by anterior/posterior tibial translation. The model is based on ligament fibre functional architecture. Geometric analysis of the deformed configurations of the model ligaments provides the additional compatibility conditions necessary for calculation of the statically indeterminate distributions of strain and stress within the ligaments and the sharing of load between ligaments. The investigation quantifies the process of ligament fibre recruitment, which occurs when fibres made slack by passive flexion/extension of the knee stretch and change their spatial positions in order to resist applied loads. The calculated ligament forces are in reasonable agreement with experimental results reported in the literature. The model explains some subtleties of ligament function not incorporated in models that represent the ligaments by a small number of lines.

Biomechanical Phenomena↗

A daily time series analysis of stream water phosphorus concentrations along an urban to forest gradient.

During a 1-year period, we sampled stream water total phosphorus (TP) concentrations daily and soluble reactive phosphorus (SRP) concentrations weekly in four Seattle area streams spanning a gradient of forested to urban-dominated land cover. The objective of this study was to develop time series models describing stream water phosphorus concentration dependence on seasonal variation in stream base flows, short-term flow fluctuations, antecedent flow conditions, and rainfall. Stream water SRP concentrations varied on average by +/- 18% or +/- 5.7 microg/L from one week to another, whereas TP varied +/- 48% or +/- 32.5 microg/L from one week to another. On average, SRP constituted about 47% of TP. Stream water SRP concentrations followed a simple sine-wave annual cycle with high concentrations during the low-flow summer period and low concentrations during the high-flow winter period in three of the four study sites. These trends are probably due to seasonal variation in the relative contributions of groundwater and subsurface flows to stream flow. In forested Issaquah Creek, SRP concentrations were relatively constant throughout the year except during the fall, when a major salmon spawning run occurred in the stream and SRP concentrations increased markedly. Stream water SRP concentrations were statistically unrelated to short-term flow fluctuations, antecedent flow conditions, or rainfall in each of the study streams. Stream water TP concentrations are highly variable and strongly influenced by short-term flow fluctuations. Each of the processes assessed had statistically significant correlations with TP concentrations, with seasonal base flow being the strongest, followed by antecedent flow conditions, short-term flow fluctuations, and rainfall. Times series models for each individual stream were able to predict approximately 70% of the variability in the SRP annual cycle in three of the four streams (r2 = 0.57-0.81), whereas individual TP models explained approximately 50% of the annual cycle in all streams (r2 = 0.39-0.59). Overall, time series models for SRP and TP dynamics explained 82% and 76% of the variability for these variables, respectively. Our results indicate that SRP, the most biologically available and therefore most important phosphorus fraction, has simpler and easier-to-predict seasonal and weekly dynamics.

Animals↗

[Planar model of nucleosome and chromatin structure of high orders].

A model of nucleosome is discussed, which consists of two nucleohistone strand folds, located at the same level, similarly directed and having a rhomboid form. The folds are symmetric to each other. Four histones (H3, H2a, H2b and H4) take part in the formation of each fold. Nucleosome begins with a DNA region, bound with H1 histone and terminates with free DNA. Total sequence of histones along DNA is H1-H3-H2a-H2b-H4-H4-H2b-H2a-H3. Polypeptide chains of neighboring histones are oppositely directed and are located at opposite DNA strands. The model explains regularities of chromatin splitting under combined effect of ds-nucleases and trypsin, and of ss-nucleases. It is also in a good agreement with other properties of chromatin. Nucleosomes join to each other "side-to-side" under coincidence of terminal elements with faces of the rhomboid nucleosome structures. The model permits to explain the formation of a highest order structure--a helix of six nucleosomes, forming a fibril of 250--300 A in diameter. The degree of DNA compactness in it reaches 80--100.

Chemical Phenomena↗

Comments on a time-dependent version of the linear-quadratic model.

The accuracy and interpretation of the "LQ + time" model (E = D(alpha + beta d) - gamma T) are discussed. Evidence is presented, based on data in the literature, that this model does not accurately describe the changes in isoeffect dose occurring with protraction of the overall treatment time during fractionated irradiation of the lung. This lack of fit of the model explains, in part, the surprisingly large values of gamma/alpha that have been derived from experimental lung data. The large apparent time factors for lung suggested by the model are also partly explained by the fact that gamma T/alpha, despite having units of dose, actually measures the influence of treatment time on the effect scale, not the dose scale, and is shown to consistently overestimate the change in total dose. The unusually high values of alpha/beta that have been derived for lung using the model (approximately 5 Gy) are shown to be influenced by the method by which the model was fitted to data. Reanalyses of the data using a more statistically valid regression procedure produce estimates of alpha/beta more typical of those usually cited for lung (approximately 3 Gy). Most importantly, published isoeffect data from lung indicate that the true deviation from the linear-quadratic (LQ) model is nonlinear in time, instead of linear, and also depends on other factors such as the effect level and the size of dose per fraction. Thus, we do not advocate the use of the "LQ + time" expression as a general isoeffect model.

Animals↗

Perception of racism explains the difference between Blacks' and Whites' level of healthcare trust.

OBJECTIVE: To test the hypothesis that the level of healthcare trust does not differ between Blacks and Whites. DESIGN: Cross-sectional telephone-based survey. METHODS: This study recruited low-income residents of Miami-Dade and Duval counties in Florida by using random-digit dialing (RDD). One thousand and five residents participated; however, analyses were limited to Black (n=550) or White (n=374) respondents. Trained interviewers used a structured questionnaire to obtain information about respondent demographics, trust in health care, perception of racism, and access to care. RESULTS: Black respondents included fewer males (P=.0146) and younger subjects (P < or = .05); otherwise, they were similar to White respondents. Compared to Duval County respondents, Miami-Dade respondents were younger (< or = .05), richer (< or = .05), and mostly males (P=.0355). Blacks perceived more racism than did Whites (P<.0001). Healthcare trust differed by race and respondents' county (P<.0001). The proportion of variance in healthcare trust explained (R2) by race was 2%. Introducing perception of racism into the model eliminated differences in trust between White and Black respondents. Overall, the model explaining healthcare trust accounted for 21.2% of the variance in trust; the model adjusted for respondents' county, demographics, access to care, and liking treatment during routine appointment. CONCLUSION: This study observed that perception of racism accounted for the residual differences in healthcare trust between Whites and Blacks; therefore, healthcare distrust may not be an attribute of Blacks. Respondents' experience with the healthcare system accounted for most of the difference in trust.

Adult↗

Timing Spectroscopy of Quasi-Periodic Oscillations in the Low-Mass X-Ray Neutron Star Binaries.

Precise simultaneous measurements of the frequencies of the two kilohertz quasi-periodic oscillations (referred in the literature as upper and lower kHz QPOs) cast doubts on the validity of the simple beat-frequency interpretation and some of the modifications introduced to explain the results of the varying frequency difference. A new model explains the variation of the frequency difference, suggesting that the upper kHz QPO, namely nuh, is an upper hybrid frequency of the Keplerian oscillator under the influence of the Coriolis force and the lower kHz QPO is the Keplerian frequency nuK. Such an oscillator has two branches characterized by a high frequency nuh ( approximately 1 kHz) and by a low frequency nuL ( approximately 50 Hz). The frequency nuL depends strongly on the angle delta between the normal to the neutron star disk and Omega-the angular velocity of the magnetosphere surrounding the neutron star. In the lower part of the QPO spectrum ( approximately 10 Hz), this model identifies the frequency of radial viscous oscillations nuV (previously called "extra noise component") and the break frequency nub, which is associated with the diffusive process in the transition region (the innermost part of the disk). According to this model, all frequencies (namely nuh, nuL, nub, and nuV) have specific dependences on nuK. This Letter focuses on the verification of the predicted relations. For the source 4U 1728-34, the best theoretical fit is obtained for delta=8&fdg;3+/-1&fdg;0, which is slightly larger than the value of delta=5&fdg;5+/-0&fdg;5 previously found for Scorpius X-1. In addition, we show that the theoretically derived power-law relation nub~nu1.61V is consistent with the recent observations of other atoll and Z-sources.

Journal Article↗

The quality of adolescents' friendships: associations with mothers' interpersonal relationships, attachments to parents and friends, and prosocial behaviors.

Adolescents' friendship quality and observed emotional expression with their best friends were predicted from reports of their mother's interpersonal relationships-specifically the quality of her marriage and social network. Two models explaining these relationships received support. Consistent with an Attachment Theory model, adolescents' perceptions of marital quality predicted attachment security with mother, father and friends. Security of attachment to friends in turn predicted best friendship quality, but not affective behavior with the friend. A Social Learning Theory model was also supported, in which perceptions of both marital quality and mother's social network quality predicted adolescents' prosocial behavior. Prosocial behavior in turn predicted both best friendship quality and affective behavior with the friend.

Adolescent↗

Prevention and treatment of juvenile problem behavior: a proposal for a socio-ecological approach.

This study proposes a socio-ecological model representing the relation between emotional and behavioral problems of children and risk factors in the family, at school and in the peer group. An empirical examination of a sample of 150 children at risk for delinquency shows that the model explains 30-40% of the variance in problem behavior. The model is used to provide possibilities for prevention and intervention.

Adaptation, Psychological↗

Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models.

We suggest a nucleotide substitution model that takes correlation between base-paired nucleotides into account. The model includes the estimation of the transition-transversion ratio and allows inference of the shape parameter of a discrete gamma distribution to include rate heterogeneity. A Cox-test statistic, applied to a diatom ribosomal RNA alignment, shows that the suggested correlation model explains evolution of the stem region better than usual independence models. Moreover, the Cox-test procedure is extended to shed some light upon the problem of assigning helical regions in a secondary structure based alignment. This approach provides an estimate of the percentage of stem positions that do not appear to be correlated.

Base Sequence↗

Spatial-scale effects on relative importance of physical habitat predictors of stream health.

A common theme in recent landscape studies is the comparison of riparian and watershed land use as predictors of stream health. The objective of this study was to compare the performance of reach-scale habitat and remotely assessed watershed-scale habitat as predictors of stream health over varying spatial extents. Stream health was measured with scores on a fish index of biotic integrity (IBI) using data from 95 stream reaches in the Eastern Corn Belt Plain (ECBP) ecoregion of Indiana. Watersheds hierarchically nested within the ecoregion were used to regroup sampling locations to represent varying spatial extents. Reach habitat was represented by metrics of a qualitative habitat evaluation index, whereas watershed variables were represented by riparian forest, geomorphology, and hydrologic indices. The importance of reach- versus watershed-scale variables was measured by multiple regression model adjusted-R2 and best subset comparisons in the general linear statistical framework. Watershed models had adjusted-R2 ranging from 0.25 to 0.93 and reach models had adjusted-R2 ranging from 0.09 to 0.86. Better-fitting models were associated with smaller spatial extents. Watershed models explained about 15% more variation in IBI scores than reach models on average. Variety of surficial geology contributed to decline in model predictive power. Results should be interpreted bearing in mind that reach habitat was qualitatively measured and only fish assemblages were used to measure stream health. Riparian forest and length-slope (LS) factor were the most important watershed-scale variables and mostly positively correlated with IBI scores, whereas substrate and riffle-pool quality were the important reach-scale variables in the ECBP.

Agriculture↗

Social networks and quality of life for long-term survivors of leukemia and lymphoma.

GOALS: This study examined the relationship between personal and medical characteristics and quality of life (QOL) for long-term survivors (LTS) of leukemia and lymphoma, and how social networks influence this relationship. PATIENTS AND METHODS: Fifty three LTS, at least 10 years postdiagnosis, were administered a standardized psychometric instrument, the Quality of Life--Cancer Survivors, to assess multidimensional aspects of QOL. Social network characteristics were measured by items assessing social support satisfaction, use of supportive care services, network size, and reliance on formal and informal social ties. MAIN RESULTS: A hierarchical regression model explained 52.4% of the variance in QOL for the final model, including all important predictors. Social support satisfaction (beta=0.393, p=0.001) and the use of supportive care services (beta=-0.262, p=0.047) significantly predicted QOL after controlling for confounding variables. Social network structures (including network size and reliance on formal and informal social ties) were indirectly associated with QOL through the use of supportive care services. CONCLUSIONS: The results indicate that the use of supportive care services, satisfaction with social support, network size, and reliance on formal and informal social ties affect QOL for long-term cancer survivors. Enhancing cancer survivors' social networks may ultimately improve their QOL.

Adult↗

A simple model to analyze the effectiveness of linear time normalization to reduce variability in human movement analysis.

In this paper we propose a simple model to predict the effect of linear time normalization to reduce variability in human movement analysis. This model is based on analysis of the correlation between timing variables and total movement duration. We obtain a simple expression to predict the variation coefficient (CV) of the normalized variable as a function of the CV of the original one, the CV of the total movement duration and the correlation between both variables. Depending on the correlation coefficient, R, very different results can be obtained after normalization. If R is positive and high, the linear normalization process effectively decreases variability. However, an increase of variability of the normalized variable can be expected if R decreases. This model explains why linear normalization does not always reduce variability. The model is applied to an example of sit-to-stand movement in order to show its effectiveness and to illustrate the close relationship between the correlation coefficient and the suitability of linear time-scale normalization.

Humans↗