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At least 307 records · Page 17Linked to original sources

PubMed1985

A microcomputer system designed for psychological and behavioural experiments.

This paper describes a relatively cheap MC6809-based microcomputer designed to run experiments in real-time, and to use the hardware and software facilities of a larger (HOST) computer. Each microcomputer is capable of controlling a wide range of psychological and behavioural experiments, and includes 32K RAM, 4K EPROM, 32 digital input lines, 32 digital output lines, analogue/digital converters, and programmable timers. Any programming language may be used, providing a cross-compiler generating MC6809 executable code exists for the HOST. Following over a year of use we can confirm that this system provides an effective method of running psychological and behavioural experiments.

Computers↗

PubMed1989

Enhancing high-speed digitization of single-unit neuronal activity on a microcomputer using a hybrid software-hardware technique.

A new data acquisition technique allows a microcomputer simultaneously to digitize spikes at high rates, analyze spike waveforms for computer-based spike separation and manage other control tasks. The technique has two key features: a software scheduling routine written in a high-level language and a hardware analog delay of neuronal signals using simple hardware external to the computer. The technique provides an alternative for real-time data acquisition and can be used on microcomputers without requiring interrupt processing and assembly language programming.

Action Potentials↗

PubMed1989

A fast, high precision and inexpensive analog to digital board for PC-AT or compatible.

We describe a simple and inexpensive circuit for analog data acquisition with high speed and high resolution, for use in an IBM PC-AT or compatible. The circuit is suitable for a wide range of applications in electrophysiology. Features of the circuit include multichannel reading, programmable sampling rate, and direct memory access controlled dual buffering for continuous recording. A program written in the C programming language for control of data acquisition is also given.

Computers↗

PubMed1986

A computerized system for rapid retrieval and compilation of critical or interesting patient data.

The timely availability and presentation of critical and interesting patient data is essential to ensure quality patient care as well as ease of recognition and, secondarily, to provide material for teaching and research. The ability to accomplish these goals expeditiously in a complex and busy clinical laboratory may be difficult to acquire. An on-line, computerized system has been developed which automatically searches each patient record for up to 600 different laboratory tests, compares each result against individually established limits, and then formats pertinent test results for maximum discrimination. The report format also includes patient and specimen collection data, diagnosis, attending physician's name, and other desired associated test results. An additional feature of the system is that selected critical or interesting results for each laboratory division may be displayed on video display terminals located throughout the laboratory and at nursing stations. The system was written using the FORTRAN programming language and runs on a Control Data Cyber 18 computer.

Clinical Laboratory Techniques↗

PubMedDate not supplied

SEQUAL: an interactive computer program for sequential classification of biomedical data.

A computer program for sequential bayesian classification of patterns defined by integer and real-valued data is described. Classified patterns from a training sample are used to estimate the non-parametric (kernel) probability density functions and the a-priori class probabilities necessary to implement the bayesian classification. For each pattern and at each step in the sequential program, the 'best' feature to be measured at the next step is computed on the basis of the estimated misallocation error rate. The user can actually use the proposed feature or any other one; once the chosen feature has been measured, its value is used to allocate the pattern into the class with the highest conditional a-posteriori probability, according to the Bayes formula. The main feature of the program consists in the computation of the 'probability of reversal' at each step of the sequential procedure. The probability of reversal represents the probability that at the next step the pattern will be classified into a class different from the present one. The probability of reversal can be used as a stopping criterion, which is more efficient than other commonly used stopping rules, such as the a-posteriori Bayes probability or the estimated misallocation error rate. The program, available in FORTRAN 77 for a VAX/VMS machine, has been tested both on simulated and real data collected from patients suffering from various forms of hepatic disease.

Bayes Theorem↗

PubMed1994

A new combined integral-light and slit-scan data analysis system (DAS) for flow cytometry.

Flow cytometry using list mode parameters such as fluorescence emission, light scatter and size on one hand and different slit-scan parameters on the other hand needs a fast, flexible, efficient and easy-to-use data analysis software. A new software package (data analysis system, DAS) has been developed that integrates data analysis for conventional (integral-light) flow cytometry and for slit-scan flow cytometry. The requirements, design and some examples are discussed and an implementation for IBM-compatible computers is presented. Special attention is directed to the handling of different data types from one-parameter histograms to multiparameter slit-scan data files. The package can be used as an interpreting programming language or as an interactive menu-driven command line interpreter with a large number of graphic, mathematical and statistical functions. DAS is not limited to use in flow cytometry only, but multidimensional data analysis, from astronomy to economics, can be done as well.

Data Display↗

PubMed1994

X window system based user interface in radiology.

A teleradiology system was designed for image transfer between two hospitals. One of the main challenges of the work was the user interface, which was to be easy to operate and to learn, and was equipped with useful functions for image manipulation and diagnosing. The software tools used were the Unix operating system (HP-UX v.7.0), C programming language and the X Window System (or simply X). The graphical user interface (GUI) was based on OSF-Motif standard, and it was developed by using the HP-Interface Architect. Both OSF-Motif and HP-Interface Architect are based on X. The results of the development project were installed for clinical use in the Turku University Central Hospital. The work demonstrates, that the X Window System has useful and advantageous features for radiology department's computer network environment.

Computer Communication Networks↗

PubMed1994

How to improve a neural network for early detection of hepatic cancer.

Radiologists perform differential diagnoses of hepatic (liver) masses using ultrasonography (US), computed tomography (CT), magnetic resonance imaging (MRI), and laboratory tests, but interpretation is often difficult. In our earlier research, a backpropagation neural network was designed to diagnose five classifications of hepatic masses: metastatic carcinoma, hepatoma, cavernous hemangioma, abscess, and cirrhosis. After being trained using ultrasonographic data and laboratory tests, the network classified hepatic masses correctly in 51 of 72 cases. That accuracy of 71% is higher than the 50% scored by the average radiology resident in training but lower than the 90% scored by the typical board-certified radiologist. What do we need to do to increase that accuracy and make the network friendly enough that radiologists will use it in their diagnoses? We have reviewed the literature, discussed alternatives and developed a plan to improve the diagnostic accuracy of the networks. That plan consists of: (i) get many more patient cases and more data variables, including MRI and CT data, so the network can be more highly trained. A shortage of enough patient cases to properly train the network is the key problem; (ii) use genetic algorithms and other techniques to preprocess the data; (iii) the network should have an optical interface to read images directly; and (iv) build a user-friendly interface using the C programming language on a 486 microcomputer. Continued research along the guidelines in this study should provide a sophisticated neural network for early detection of hepatic cancer that hopefully will exceed the diagnostic abilities of most radiologists.

Carcinoma, Hepatocellular↗

PubMed1991

The portable virtual simulator.

The Virtual Simulator is a software tool for support and management of the geometric component of 3-dimensional radiotherapy treatment design. The Virtual Simulator is a software implementation of a physical simulator with additional functionality not currently available on physical simulators. Treatment of a virtual patient, derived from CT or other source, is simulated using the Virtual Simulator in the same way a physical simulator would be used. The intent of this approach is to provide the user with a familiar working environment for radiotherapy treatment design. Key features include an effective and efficient user interface, and the use of computing techniques and software standards which enhance portability to a variety of computer workstations. The Virtual Simulator is implemented in the C programming language using the X Window System, and has been written with the generic UNIX workstation in mind. It has been demonstrated that it can be installed and run without modification on workstations from a number of vendors.

Computer Simulation↗

PubMed1992

Radiation oncology residents' computer workstation.

We are investigating the feasibility of using the Macintosh computer as a workstation platform for radiation oncology residents because of its ease of use, graphics capability, and low cost. Hypercard was chosen as the programming environment because it easily mixes graphics, text, and control functions in an integrated screen display. Furthermore, it results in a system that can be relatively easily extended and customized by individual users with varying degrees of computer skills. We have developed several software modules in order to test the ability of this environment to support the demands of such a workstation. Modules created thus far include various clinical physics aids and tutorials, treatment planning guides, oncology databases, and others. The software runs on all Macintosh configurations, but calculation speeds are improved when a 68020 or greater processor is used. In general, we have been pleased with the implementation thus far. Graphics display capability is good, but design and entry of graphics have proved labor-intensive. Searching is fast and text is easily entered and manipulated. Finished modules can be customized with minimal computer training, but implementing complex new functions requires familiarity with Hypercard's programming language. New modules, once developed, are easily integrated into the workstation universe, suggesting that cooperative development of the workstation by multiple contributors is realistically achievable.

Computer Graphics↗

PubMed1983

A computer approach to measuring shuttle box activity and conditioned place preference.

A procedure is described for measuring locomotor activity and place preference using an Apple II + computer. The interface consists of a single integrated circuit connected by a 16 pin jumper cable to the Apple's game I/O connector. This approach can be easily adapted to provide sequential reading of one to seven input lines from up to 16 different test boxes. The software is written in basic and doesn't require any knowledge of memory addressing or machine language programming.

Animals↗

PubMed1989

An automated approach for conditioning and testing the hearing of gerbils.

A simple, inexpensive hardware and software protocol is described for conditioning and testing hearing of gerbils with minimal experimenter involvement. Behavioral thresholds correspond closely with data which employ nonautomated procedures. Partial source listings of the programs written in the 'C' programming language are provided.

Acoustic Stimulation↗

PubMed1993

Enhanced robotic dissolution system with concurrent off-line analysis.

A Zymate II robotic dissolution system was modified by addition of a liquid chromatography (LC) system equipped with an Isco ISIS autosampler. Using the Concurrent EasyLab programming language, operation of this LC system was integrated into the main robotic dissolution procedure. This enabled simultaneous dissolution sampling and LC analysis of standard and pre-pulled sample solutions. The resulting dual-tasking system effects considerable efficiency of operation and results in significant time savings. Comparison of the robotic and non-robotic data indicate good correlation and statistically insignificant differences at the 95% confidence level. Validation studies confirm linearity and precision of the quantitative LC method, accuracy and precision of volume and temperature measurements and negligible vessel-to-vessel carryover.

Capsules↗

PubMed1997

A computer model of uterine contractions based on action potential propagation and intercellular calcium waves.

OBJECTIVE: To simulate a uterine contraction using a novel computer model for uterine communication and to validate the assumptions of the computer model by comparing the simulated contraction with a real uterine contraction. METHODS: The computer model assumed two known mechanisms of intercellular communication: action potential propagation and calcium wave propagation. Simulations were performed on a desktop computer using available programming language. Model validity was assessed by fitting the computer-simulated contraction to a real contraction and comparing the fit values with values measured independently. RESULTS: The simulated contraction demonstrated five characteristics that are also observed in human labor: 1) gradual onset, 2) a linear rising segment, 3) a plateau region, 4) a symmetrical fall, and 5) gradual offset. The fit values agreed well with values determined experimentally and supported the model. CONCLUSIONS: Our results support the model, strongly suggesting that intercellular communication occurs throughout the uterus by action potentials and locally within the tissue by calcium waves.

Action Potentials↗

PubMed2000

Enhancing the quality of studies using transcranial magnetic and electrical stimulation with a new computer-controlled system.

Transcranial magnetic (TMS) and electrical (TES) stimulation of the human brain have become useful tools in neurophysiological and neuropsychological research. Here we describe an integrated system that allows experimental control, data recording and analysis of neurophysiological and neuropsychological TMS and TES procedures (including motor thresholds, recruitment curves, intracortical inhibition and facilitation with paired pulses). The system uses a multifunction input/output board and a set of virtual instruments (VI) programmed with the Labview graphical programming language. It also includes online curve fitting of recruitment curves using the Boltzmann sigmoid function and monitoring of the preinnervation grade of the target muscle. Modules for neuropsychological stimulus presentation or faster repetitive stimulation can be easily added. This system yields more accurate data recording and analysis in a user friendly and unified environment.

Computers↗

PubMed1993

An iconographic program for computer-controlled whole-cell voltage clamp experiments.

A Macintosh-based system is described for performing instrument control, data acquisition and storage operations in single-electrode whole-cell voltage clamp experiments. The system consists of a commercially available voltage clamp amplifier, multifunction input/output (I/O) board, graphical programming language (LabVIEW 2) and custom built 'virtual instrument' (VI). The I/O board is capable of fast (up to 110 ksample/s) multichannel analog-to-digital (A/D) conversion with 12-bit resolution. It can control the gain settings of the clamp unit through digital I/O lines and generate the P/N leak subtraction protocol to eliminate the linear portion of capacitive currents using analog output voltages and gating pulses. Complete voltage clamp protocols can be implemented using the on-screen front panel controls of the VI. It enables the user to visualize the acquired data, to graph sets of current-voltage (I-V) relations or to fit single-exponential functions to one current trace. To evaluate the adequacy of whole-cell recording, the total membrane capacitance (Cm), the series resistance (Rs) and the time constant (tau c) of the decay of the capacitive current are calculated using the single-exponential function fit to the data. The system is particularly well suited to the study of large quantities of transmembrane I-V relationships. Source code for the crucial elements of the VI as well as sample recordings from a cultured spinal cord neuron, illustrating system operation, are presented.

Amplifiers, Electronic↗

PubMed1999

A procedure for generating bootstrap samples for the validation of nonlinear mixed-effects population models.

A method is presented for automated preparation of bootstrap data samples and their presentation to NONMEM for use in the validation of population pharmacokinetic or pharmacodynamic models, which have been developed with relatively small numbers of subjects. The bootstrap sampling procedure involves the use of an MS-DOS batch file and a script file for use with the public-domain text processing program, AWK, which is a single EXE file (48k in size for the version used in this report). A UNIX version of AWK is also available and UNIX users can adapt the process to their needs. Its use obviates the need for expensive, high-end statistical packages and associated script files written using in-built programming languages. The method can easily be adapted to bootstrap sampling requirements in other biomedical modelling applications.

Computer Simulation↗

PubMed2000

MASTER: a Windows program for recording multiple auditory steady-state responses.

MASTER is a Windows-based data acquisition system designed to assess human hearing by recording auditory steady-state responses. The system simultaneously generates multiple amplitude-modulated and/or frequency-modulated auditory stimuli, acquires electrophysiological responses to these stimuli, displays these responses in the frequency-domain, and determines whether or not the responses are significantly larger than background electroencephalographic activity. The operator can print out the results, store the data on disk for more extensive analysis by other programs, review stored data, and combine results. The system design follows clear principles concerning the generation of acoustic signals, the acquisition of artifact-free data, the analysis of electrophysiological responses in the frequency-domain, and the objective detection of signals in noise. The instrument uses a popular programming language (LabVIEW) and a commercial data acquisition board (AT-MIO-16E-10), both of which are available from National Instruments.

Computer Simulation↗