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Adaptation to the sky: Defining the feather with integument fossils from mesozoic China and experimental evidence from molecular laboratories.

In this special issue on the Evo-Devo of amniote integuments, Alibardi has discussed the adaptation of the integument to the land. Here we will discuss the adaptation to the sky. We first review a series of fossil discoveries representing intermediate forms of feathers or feather-like appendages from dinosaurs and Mesozoic birds from the Jehol Biota of China. We then discuss the molecular and developmental biological experiments using chicken integuments as the model. Feather forms can be modulated using retrovirus mediated gene mis-expression that mimics those found in nature today and in the evolutionary past. The molecular conversions among different types of integument appendages (feather, scale, tooth) are discussed. From this evidence, we recognize that not all organisms with feathers are birds, and that not all skin appendages with hierarchical branches are feathers. We develop a set of criteria for true avian feathers: 1) possessing actively proliferating cells in the proximal follicle for proximo-distal growth mode; 2) forming hierarchical branches of rachis, barbs, and barbules, with barbs formed by differential cell death and bilaterally or radially symmetric; 3) having a follicle structure, with mesenchyme core during development; 4) when mature, consisting of epithelia without mesenchyme core and with two sides of the vane facing the previous basal and supra-basal layers, respectively; and 5) having stem cells and dermal papilla in the follicle and hence the ability to molt and regenerate. A model of feather evolution from feather bud --> barbs --> barbules --> rachis is presented, which is opposite to the old view of scale plate --> rachis --> barbs --> barbules (Regal, '75; Q Rev Biol 50:35).

Adaptation, Biological↗

Fossil sister group of craniates: predicted and found.

This study investigates whether the recently described Cambrian fossil Haikouella (and the very similar Yunnanozoon) throws light on the longstanding problem of the origin of craniates. In the first rigorous cladistic analysis of the relations of this animal, we took 40 anatomical characters from Haikouella and other taxa (hemichordates, tunicates, cephalochordates, conodont craniates and other craniates, plus protostomes as the outgroup) and subjected these characters to parsimony analysis. The characters included several previously unrecognized traits of Haikouella, such as upper lips resembling those of larval lampreys, the thick nature of the branchial bars, a mandibular branchial artery but no mandibular branchial bar, muscle fibers defining the myomeres, a dark fibrous sheath that defines the notochord, conclusive evidence for paired eyes, and a large hindbrain and diencephalon in the same positions as in the craniate brain. The cladistic analysis produced this tree: (protostomes, hemichordates (tunicates, (cephalochordates, (Haikouella, (conodonts + other craniates))))), with the "Haikouella + craniate" clade supported by bootstrap values that ranged from 81-96%, depending on how the analysis was structured. Thus, Haikouella is concluded to be the sister group of the craniates. Alternate hypotheses that unite Haikouella with hemichordates or cephalochordates, or consider it a basal deuterostome, received little or no support. Although it is the sister group of craniates, Haikouella is skull-less and lacks an ear, but it does have neural-crest derivatives in its branchial bars. Its craniate characters occur mostly in the head and pharynx; its widely spaced, robust branchial bars indicate it ventilated with branchiomeric muscles, not cilia. Despite its craniate mode of ventilation, Haikouella was not a predator but a suspension feeder, as shown by its cephalochordate-like endostyle, and tentacles forming a screen across the mouth. Haikouella was compared to pre-craniates predicted by recent models of craniate evolution and was found to fit these predictions closely. Specifically, it fits Northcutt and Gans' prediction that the change from ciliary to muscular ventilation preceded the change from suspension feeding to predatory feeding; it fits Butler's claim that vision was the first craniate sense to start elaborating; it is consistent with the ideas of Donoghue and others about the ancestor of conodont craniates; and, most strikingly, it resembles Mallatt's prediction of the external appearance of the ancestral craniate head. By contrast, Haikouella does not fit the widespread belief that ancestral craniates resembled hagfishes, because it has no special hagfish characters. Overall, Haikouella agrees so closely with recent predictions about pre-craniates that we conclude that the difficult problem of craniate origins is nearly solved.

Anatomy, Comparative↗

Original molluscan radula: comparisons among Aplacophora, Polyplacophora, Gastropoda, and the Cambrian fossil Wiwaxia corrugata.

As the original molluscan radula is not known from direct observation, we consider what the form of the original radula may have been from evidence provided by neomenioid Aplacophora (Solenogastres), Gastropoda, Polyplacophora, and the Cambrian fossil Wiwaxia corrugata (Matthews). Conclusions are based on direct observation of radula morphology and its accessory structures (salivary gland ducts, radular sac, anteroventral radular pocket) in 25 species and 16 genera of Aplacophora; radula morphogenesis in Aplacophora; earliest tooth formation in Gastropoda (14 species among Prosobranchia, Opisthobranchia, and Pulmonata); earliest tooth formation in four species of Polyplacophora; and the morphology of the feeding apparatus in W. corrugata. The existence of a true radula membrane and of membranoblasts and odontoblasts in neomenioids indicates that morphogenesis of the aplacophoran radula is homologous to that in other radulate Mollusca. We conclude from p redness of salivary gland ducts, a divided radular sac, and a pair of anteroventral pockets that the plesiomorphic state in neomenioids is bipartite, formed of denticulate bars that are distichous (two teeth per row) on a partially divided or fused radula membrane with the largest denticles lateral, as occurs in the genus Helicoradomenia. The tooth morphology in Helicoradomenia is similar to the feeding apparatus in W. corrugata. We show that distichy also occurs during early development in several species of gastropods and polyplacophorans. Through the rejection of the null hypothesis that the earliest radula was unipartite and had no radula membrane, we conclude that the original molluscan radula was similar to the radula found in Helicoradomena species.

Animals↗

Evolution and homology of the astragalus in early amniotes: new fossils, new perspectives.

The reorganization of the ankle in basal amniotes has long been considered a key innovation allowing the evolution of more terrestrial and cursorial behavior. Understanding how this key innovation arose is a complex problem that largely concerns the homologizing of the amniote astragalus with the various ossifications in the anamniote tarsus. Over the last century, several hypotheses have been advanced homologizing the amniote astragalus with the many ossifications in the ankle of amphibian-grade tetrapods. There is an emerging consensus that the amniote astragalus is a complex structure emerging via the co-ossification of several originally separate elements, but the identities of these elements remain unclear. Here we present new fossil evidence bearing on this contentious question. A poorly ossified, juvenile astragalus of the large captorhinid Moradisaurus grandis shows clear evidence of four ossification centers, rather than of three centers or one center as posited in previous models of astragalus homology. Comparative material of the captorhinid Captorhinikos chozaensis is also interpretable as demonstrating four ossification centers. A new, four-center model for the homology of the amniote astragalus is advanced, and is discussed in the context of the phylogeny of the Captorhinidae in an attempt to identify the developmental transitions responsible for the observed pattern of ossification within this clade. Lastly, the broader implications for amniote phylogeny are discussed, concluding that the neomorphic pattern of astragalus ossification seen in all extant reptiles (including turtles) arose within the clade Diapsida.

Alligators and Crocodiles↗

Functional implications of neural canal anatomy in recent and fossil marine carnivores.

A statistical and functional relationship between neural canal anatomy and locomotor mode is demonstrated in living marine mammals of the Order Carnivora. This relationship is interpreted to be the result of differential innervation and territory of musculature involved in generating the six locomotor patterns analyzed. This osteological reflection of a behavioral trait allows prediction of locomotor pattern in extinct genera of closely related taxa. The robust data allow such predictions even when a considerable number of presacral vertebrae are missing in the fossil specimens. In some cases, these predictions conflict with interpretations based solely on limb osteology.

Analysis of Variance↗

Carbon isotope ratio analysis of organic moieties from fossil mummified wood: establishing optimum conditions for off-line pyrolysis extraction using gas chromatography/mass spectrometry.

Mummified fossil wood was studied using off-line pyrolysis-gas chromatography/mass spectrometry to reveal detailed insights into the pyrolysis conditions that are needed to obtain simultaneously sufficient amounts of both cellulose and lignin markers for stable carbon isotope analyses. The off-line pyrolysis was applied at a range of temperatures (200, 250 and 300 degrees C) and times (1 and 2 h) to determine the optimum temperature and time that yielded the highest quantity of true markers for lignin and cellulose. Increasing the time from 1 to 2 h had no effect whereas increasing the temperature led to large differences. The products released during the low-temperature pyrolysis were mostly related to thermally labile moieties. Only at 300 degrees C were sufficient amounts of products released that represent true cellulose and lignin building blocks and which could be studied using gas chromatography/combustion isotope ratio mass spectrometry.

Alcohols↗

Developmental evolution of metazoan bodyplans: the fossil evidence.

Evidence from the fossil record, developmental biology and metazoan phylogeny demonstrates that the rapid origination of major metazoan bodyplans during the late Neoproterozoic and earliest Cambrian was intimately associated with a series of innovations in developmental control mechanisms that included the Hox gene cluster. The interval between about 565 Ma (million years ago) and 530 Ma evidently includes the protostome-deuterostome branching, diversification of independent higher metazoan clades, diversification of important developmental control systems, and formation of higher metazoan bodyplans. Comparative paleontological and developmental studies will allow further tests of alternative models for the sequence of these events, illuminating the association between developmental and bodyplan evolution.

Animals↗

Fossil clavicle of a middle Pleistocene hominid from the Central Narmada Valley, India.

The discovery of a Middle Pleistocene hominid clavicle is reported here. This discovery is particularly important because clavicles are hitherto unrepresented in the fossil record of Asia. The Narmada clavicle comes from the Boulder Conglomerate horizon at Hathnora near Hoshangabad in the Central Narmada Valley. This is the same deposit that previously yielded the Homo erectus/archaic Homo sapiens partial cranium, which has recently been dated to between 0.2 and 0.7 ma (million years ago). The specimen has some unusual morphology and is a very short and robust bone, far shorter than even the early African Homo erectus clavicles. It is about the size that would be expected in an adult human pygmy. This discovery reopens the debate on the taxonomic position of the Narmada hominid in human ancestry.

Animals↗

Additional human fossils from Klasies River Mouth South Africa.

A fragmentary temporal bone and partial atlas from the Middle Stone Age (MSA) at Klasies River Mouth (KRM) are described and analyzed. The atlas (SAM-AP 6268) is comparable to Levantine "Early Modern", Neandertal and recent human vertebrae. The temporal (SAM-AP 6269) is similar to recent African homologues except that the posteromedial wall of the glenoid fossa is composed entirely of the squamous temporal, a situation that appears to be infrequent among other Pleistocene fossils. The KRM glenoid fossa is also mediolateraly broad and anteroposteriorly short in comparison with many, but not, all recent specimens. Nevertheless, the KRM temporal is decidedly modern, both morphologically and metrically, by comparison with other Pleistocene specimens. The limited evidence provided by this bone is consistent with that of other MSA cranial remains from this site in suggesting an overall, if somewhat ambiguous pattern of morphological modernity.

Animals↗

Middle Stone Age human fossils from Die Kelders Cave 1, Western Cape Province, South Africa.

Die Kelders Cave 1 (DK1) preserves a thick series of Middle Stone Age (MSA) horizons that date to a fairly short temporal interval sometime between about 60 and 80 ka ago. Twenty-seven human fossils, comprising 24 isolated teeth, a mandibular fragment, and two manual middle phalanges derive from seven of the 12 layers. The vast majority are children, and all may have come from sub-adult individuals. The entire assemblage may represent a minimum of ten individuals. As might be expected for teeth of such antiquity, most of the DK1 crowns tend to be large in comparison to recent African homologues. They tend to be smaller than, albeit more similar in size to, the teeth of penecontemporaneous archaic populations from Eurasia. The majority of morphological variants displayed by the DK1 crowns characterize the teeth of recent sub-Saharan Africans, and the DK1 crowns resemble those of recent Africans in a number of traits that have been used to define a sub-Saharan African regional complex. The morphological similarities between the DK1 MSA and recent African teeth, however, do not necessarily signify a close evolutionary relationship between them, because these crowns variants appear to be plesiomorphic.

Africa South of the Sahara↗

Fossil Macaca remains from RDB quarry (Villafranca d'Asti, Italy): new data and overview.

Mentioned in faunal lists since the late 1960s, Macaca remains from Villafranca d'Asti (early Villafranchian, Italy) were never described in detail. If some doubts were reported in the past about the related stratigraphic position, at present, partly thanks to the original acquisition labels, there is enough information to place these finds within the updated stratigraphic and biochronologic framework of the Villafranca d'Asti area. The reported sample consists of upper dentition and postcranial bones. By size and morphology all these remains are clearly Cercopithecinae, comparable with the extant Macaca sylvanus and mostly distinguishable from Mesopithecus, Dolichopithecus and Paradolichopithecus. The dental remains in particular give us the opportunity to discuss an inferred European size trend from smallest Pliocene macaques up to the larger living species M. sylvanus. Although Pliocene localities in western Europe have yielded so far only scanty Macaca finds, our data (even if preliminary) refute a major overall size difference between the extant Barbary macaque and the related fossil remains.

Animals↗

The first discovery of a complete skeleton of a fossil orang-utan in a cave of the Hoa Binh Province, Vietnam.

Here we provide a description of the first complete adult fossil orang-utan skeleton from the Asian mainland. This specimen, and remains of a juvenile orang, were collected in a late Pleistocene cavern in the Hoa Binh Province of The Socialist Republic of Vietnam. The results confirm the suggestions by Hooijer (1948) Zool. Meded. Leiden29, 175-301 and later by Schwartz et al. (1995) Anthrop. Pap. Am. Mus. Nat. Hist.76, 1-24, that ancient orang-utans had bigger teeth than those of modern Pongo pygmaeus (P. p. pygmaeus and P. p. abelii), while the dental morphology is similar. Body proportions of the adult individual of Hoa Binh show a large skull with very large teeth but proportionally a small body. This individual is also singular in having high intermembral and brachial indices, in comparison with those of modern subspecies.

Animals↗

Fossil Cercopithecidae from the Hadar Formation and surrounding areas of the Afar Depression, Ethiopia.

Hadar is well known as one of the most productive early hominin sites in the world. Between 1972 and 1994 a large sample of fossil cercopithecid specimens was collected from Hadar and the nearby sites of Geraru, Ahmado, and Leadu. At least five, and possibly six, species are present in the sample, including two chronological subspecies of Theropithecus oswaldi. T. o. cf. darti is known from the Middle Pliocene deposits in the Hadar area, along with Parapapio cf. jonesi, cf. Rhinocolobus turkanaensis, and a new species of Cercopithecoides, C. meaveae. There are also isolated molars from the Middle Pliocene of a large colobine which most likely represent cf. R. turkanaensis, but may also represent another large colobine known from the nearby site of Maka in the Middle Awash. T. o. oswaldi is represented from younger deposits of Late Pliocene and Early Pleistocene age, along with the large colobine Cercopithecoides kimeui. Throughout the sequence Theropithecus oswaldi is by far the most abundant cercopithecid, with the other taxa being comparatively rare. The Parapapio material from Hadar is important as the only securely identifiable material of the genus in the East African Pliocene. Furthermore, the Hadar material includes the only associated postcranial remains for the genus. If the tentative identification of Rhinocolobus is correct, then the Hadar sample is the only known occurrence outside of the Turkana Basin. Cercopithecoides meaveae is a new species, currently only known from the Hadar region, most importantly by the associated partial skeleton from Leadu. It appears to show adaptations for terrestrial locomotion. Finally, Cercopithecoides kimeui, a very large colobine previously known from Olduvai Gorge, Koobi Fora, and Rawi is recorded from the uppermost part of the Formation.

Adaptation, Physiological↗

Molecules, morphology, fossils, and the relationship of angiosperms and Gnetales.

Morphological analyses of seed plant phylogeny agree that Gnetales are the closest living relatives of angiosperms, but some studies indicate that both groups are monophyletic, while others indicate that angiosperms are nested within Gnetales. Molecular analyses of several genes agree that both groups are monophyletic, but differ on whether they are related. Conflicts among morphological trees depend on the interpretation of certain characters; when these are analyzed critically, both groups are found to be monophyletic. Conflicts among molecular trees may reflect the rapid Paleozoic radiation of seed plant lines, aggravated by the long branches leading to extant taxa. Trees in which angiosperms are not related to Gnetales conflict more with the stratigraphic record. Even if molecular data resolve the relationships among living seed plant groups, understanding of the origin of angiosperm organs will require integration of fossil taxa, necessarily using morphology.

Evolution, Molecular↗

Native, industrial and fossil chitins.

Countless living organisms continuously synthesize and degrade chitin enzymatically, for nutritional, morphogenetic and defensive or aggressive purposes. Chemically modified chitins are important in the light of their biochemical significance in medicine and crop protection; their environmentally friendly behaviour permits industrial exploitation of the huge chitinous biomasses generated by fishing activities and biotechnology. Chitin is promptly metabolized in sediments, and fossil chitin is not frequently encountered.

Animals↗

Sequence similarities of protein kinase substrates and inhibitors with immunoglobulins and model immunoglobulin homologue: cell adhesion molecule from the living fossil sponge Geodia cydonium. Mapping of coherent database similarities and implications for evolution of CDR1 and hypermutation.

Sequences of immunoglobulin (Ig) domains of adhesive molecule GSAMS from the living fossil sponge Geodia cydonium were compared with the important motif of peptide protein kinase substrates and inhibitors (PKSI), detail PKSI sequences, and a common template sequence, derived from structures determined previously. We found the site-restricted sequence similarities to these peptide sequences predominantly in the GSAM Ig1 domain of GSAMS in the domain region related to corresponding Ig similarities detected earlier. Additional sequence block-related analysis revealed the presence of CDR1-like segments within PKSI-related regions and resulted in the detection of increased numbers of hypermutation motifs just in the CDR1-like segment of GSAM Ig1 (GSAM(cdrl.1)). In the following database searches with PKSI-related regions and GSAM(cdr1.1) we looked for: (i) peptide similarities present in the context of Ig domains or related structures in a large range of species from Archaea to Vertebrata, and (ii) some special nucleotide similarities.

Amino Acid Motifs↗

Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record.

Planktonic foraminifera are marine protists, whose calcareous shells form oceanic sediments and are widely used for stratigraphic and paleoenvironmental analyses. The fossil record of planktonic foraminifera is compared here to their molecular phylogeny inferred from ribosomal DNA sequences. Eighteen partial SSU rDNA sequences from species representing all modern planktonic families (Globigerinidae, Hastigerinidae, Globorotaliidae, Candeinidae) were obtained and compared to seven sequences representing the major groups of benthic foraminifera. The phylogenetic analyses indicate a polyphyletic origin for the planktonic foraminifera. The Candeinidae, the Globorotaliidae, and the clade Globigerinidae + Hastigerinidae seem to have originated independently, at different epochs in the evolution of foraminifera. Inference of their relationships, however, is limited by substitution rates of heterogeneity. Rates of SSU rDNA evolution vary from 4.0 x 10(-9) substitutions/site/year in the Globigerinidae to less than 1.0 x 10(-9) substitutions/site/year in the Globorotaliidae. These variations may be related to different levels of adaptation to the planktonic mode of life. A clock-like evolution is observed among the Globigerinidae, for which molecular and paleontological data are congruent. Phylogeny of the Globorotaliidae is clearly biased by rapid rates of substitution in two species (G. truncatulinoides and G. menardii). Our study reveals differences in absolute rates of evolution at all taxonomic levels in planktonic foraminifera and demonstrates their effect on phylogenetic reconstructions.

Animals↗

Daughters inherit colonies from mothers in the 'living-fossil' ant Nothomyrmecia macrops.

Newly mated queens of monogynous (single queen) ants usually found their colonies independently, without the assistance of workers. In polygynous (multiple queen) species queens are often adopted back into their natal nest and new colonies are established by budding. We report that the Australian 'living-fossil' ant, Nothomyrmecia macrops, is exceptional in that its single queen can be replaced by one of the colony's daughters. This type of colony founding is an interesting alternative reproductive strategy in monogynous ants, which maximizes fitness under kin selection. Successive queen replacement results in a series of reproductives over time (serial polygyny), making these colonies potentially immortal. Workers raise nieces and nephews (relatedness < or = 0.375) the year after queen replacement. Although N. macrops is 'primitive' in many other respects, colony inheritance is likely to be a derived specialization resulting from ecological constraints on solitary founding.

Animals↗