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Results for “canonical correlation analysis”

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PubMed1990

[A comparison of hematological and serum biochemical values between two groups of female cynomolgus monkeys reared under different conditions].

The influence of long term rearing conditions on the hematological and serum biochemical values in laboratory-bred female cynomolgus monkeys (Macaca fascicularis) was studied under the following two conditions. Group A: New born infants were nursed by their mothers for at least 12 weeks after birth. After weaning, four monkeys of approximately equal age and body weight were kept in a relatively small cage (90 cm W x 60 cm D x 60 cm H) and reared to five years of age. These rearing conditions are commonly used in the breeding program of our primate center. Group B: One male and five females of wild origin were introduced into a relatively large cage (180 cm W x 180 cm D x 160 cm H). Female monkeys born in these cages were used in this study. All of them were reared by their own mothers and grew well in these cages. Male monkeys born in these cages were removed at about 3.5 years of age. Hematological and serum biochemical values between the two groups in each age class were compared and analyzed by the canonical discriminant analysis (the discriminant analysis with reduction of dimensionality). Age correlated highly with the value of the first canonical variate. The second canonical variate detected a difference in the blood hematology and biochemistry probably induced by the difference in rearing conditions.

Age Factors↗

PubMed1995

A comparison of period amplitude and power spectral analysis of sleep EEG in normal adults and depressed outpatients.

Three experiments were carried out to evaluate the relationship between two techniques for quantifying electroencephalographic (EEG) data during sleep: period amplitude analysis (PAA) and power spectral analysis (PSA). In Experiment 1, canonical correlations and regression analyses were computed on PSA and PAA data from 40 undergraduate volunteers. The results yielded an average canonical correlation of 0.98. Further, multiple regression analyses demonstrated that the PSA variables accounted for approximately 66% of the variance in the PAA data, whereas PAA variables captured 88% of the variance in the PSA data. Epoch-to-epoch correlations were higher for PAA measures than for PSA data, perhaps indicating greater stability of PSA measures across epochs of sleep. In Experiment 2, PSA and PAA data were compared in 17 unmedicated outpatients with unipolar depression. Canonical correlations and regression analyses indicated that the overlap in variance between PSA and PAA did not exceed 50%, regardless of whether PSA or PAA variables were used as predictors. Epoch-to-epoch correlations between PAA measures were significantly higher than correlations among PSA variables, again suggesting greater stability of PAA data across epochs of sleep. The range of correlations for either data set was, however, substantially lower in the depressed than in the normal group. Experiment 3 evaluated the possibility that filter settings and artifact-rejection procedures had contributed to reduced overlap in PSA-PAA variance and reduced stability in depressed patients. An additional group of eight healthy volunteers served as subjects. Findings in Experiment 3 indicated that methodological differences between Experiments 1 and 2 did not account for the reduced correlations in the depressed group. It was concluded that PSA and PAA data should be comparable in normal subjects but are relatively independent in depressed patients. Epoch-to-epoch correlations were higher for PAA data than those found between PSA measures in both normal subjects and depressed patients, suggesting that PAA may be more stable across sleep epochs. Reduced stability may be a reflection of nonstationarity in the EEG of depressed patients.

Adolescent↗

PubMed1987

Irrational beliefs in relation to self-esteem and depression.

The joint relationship of depression and self-esteem to Ellis' "irrational beliefs" as measured by the Irrational Beliefs Test (Jones, 1968) was investigated in an Australian sample (N = 268) of students and nonstudents. Analysis that used partial correlation and canonical correlation showed six irrational beliefs to be jointly related to low self-esteem and depression: Demand for Approval, High Self-expectations, Frustration Reactivity, Anxious Overconcern, Problem Avoidance, and Helplessness. The results confirm the findings of previous studies and are consistent with the concept of depressive self-schemas.

Adolescent↗

PubMed2003

Structure of microbial communities in Sphagnum peatlands and effect of atmospheric carbon dioxide enrichment.

Little is known about the structure of microbial communities in Sphagnum peatlands, and the potential effects of the increasing atmospheric CO2 concentration on these communities are not known. We analyzed the structure of microbial communities in five Sphagnum-dominated peatlands across Europe and their response to CO2 enrichment using miniFACE systems. After three growing seasons, Sphagnum samples were analyzed for heterotrophic bacteria, cyanobacteria, microalgae, heterotrophic flagellates, ciliates, testate amoebae, fungi, nematodes, and rotifers. Heterotrophic organisms dominated the microbial communities and together represented 78% to 97% of the total microbial biomass. Testate amoebae dominated the protozoan biomass. A canonical correspondence analysis revealed a significant correlation between the microbial community data and four environmental variables (Na+, DOC, water table depth, and DIN), reflecting continentality, hydrology, and nitrogen deposition gradients. Carbon dioxide enrichment modified the structure of microbial communities, but total microbial biomass was unaffected. The biomass of heterotrophic bacteria increased by 48%, and the biomass of testate amoebae decreased by 13%. These results contrast with the absence of overall effect on methane production or on the vegetation, but are in line with an increased below-ground vascular plant biomass at the same sites. We interpret the increase in bacterial biomass as a response to a CO2-induced enhancement of Sphagnum exudation. The causes for the decrease of testate amoebae are unclear but could indicate a top-down rather than a bottom-up control on their density.

Amoeba↗

PubMed2006

Comparison of the concentrations of phenolic constituents in cane sugar manufacturing products with their antioxidant activities.

Polyphenol content and free radical scavenging capacity of seven kinds of sugar manufacturing products (A sugars, clear juices, syrups, massecuite, and A, B, and C molasses) were studied. Seventy-two samples were collected at different stages of the process during two sugar harvests from a local sugar factory (Bois-Rouge, La Réunion). The total phenolic content of sugar products was determined according to the Folin-Ciocalteu assay. Polyphenols of sugar products were extracted with ethyl acetate and quantified by LC-UV-ESI-MS during all of the process. ABTS and DPPH assays were applied to aqueous solution of sugar products, which exhibited interesting free radical scavenging activity. Comparatively, ethyl acetate extracts exhibited higher antioxidant activity. Multivariate analyses (principal component analysis and canonical discriminant analysis) demonstrated a significant correlation between polyphenols and antioxidant activity. Moreover, it was observed that the sugar process results in an increase of the phenolic content and the free radical scavenging capacity of the different products. These products and especially molasses proved to be a rich source of natural antioxidants and may represent an interesting alternative to synthetic food antioxidants.

Antioxidants↗

PubMed1975

Common themes among morale and depression scales.

This paper reports on the intra- and interbattery scaling of three morale and depression batteries comprised of self-reported items: PGC, G-H, and ZUNG. Responses to the three scales were sought from a sample of long-term residents of a state mental hospital. First, the batteries were factor analyzed separately to identify the intrabattery scales; then the resultant scales were compared using canonical correlation and super matrix factor analysis to identify the interbattery themes. These analyses resulted in the identification of a Clinical Depression domain across all three batteries and single independent themes in both the Zung and PGC batteries.

Adult↗

PubMedDate not supplied

The Wilhelmine E. Key 1987 invitational lecture. Genetic changes associated with the evolution of adaptedness in cultivated plants and their wild progenitors.

The results of long-term studies of changes in adaptedness in a number of experimental populations of annual plants are summarized. Measurements made of quantitative traits showed that cumulative increases in reproductive capacity continued in these experimental populations for more than 50 generations. Highly significant allelic frequency changes also occurred for marker loci governing morphological variants, disease resistance, allozymes, and rDNA restriction fragments. Individual effects of the marker loci on quantitative traits were determined by extensive progeny testing of selfed families descended from single plants isolated from various generations of the experimental populations. Comparisons between homozygotes and heterozygotes of marker loci for quantitative trait expression revealed that all the marker loci studied had statistically significant additive effects on several to many quantitative traits; thus, each Mendelian locus, in addition to being a locus for its discrete descriptive effect, was also a locus for several quantitative traits. Consistent associations were found between superior reproductive capacity (e.g., larger numbers of kernels per plant) and the alleles of marker loci that increased in frequency over generations; no other quantitative traits measured were clearly and consistently associated with alleles that increased in frequency. Multilocus analyses based on canonical correlation, log linear, and cluster analysis procedures showed that highly significant associations developed in early generations among alleles of different loci in all the predominantly selfing populations studied. Dynamic changes featuring amalgamations of alleles into fewer clusters involving larger numbers of loci continued into the late generations. Patterns of ecogenetic differentiation that developed under predominant selfing were found to be fine-scaled overlays of environmental heterogeneity. The picture of evolutionary change that emerges is one in which the incorporation of increasing numbers of favorably interacting alleles into large synergistic complexes was accompanied in inbreeding populations by increases in adaptedness to the local environment and also by striking ecogenetic differentiation among local populations that occupy unlike habitats, including differentiation between cultivated plants and their wild progenitors. Selfing appears to promote the development and maintenance of adaptedness within populations and at the same time to facilitate the development of spatial differentiation by retarding gene flow between populations.(ABSTRACT TRUNCATED AT 400 WORDS)

Adaptation, Physiological↗

PubMed2004

[Effects of different vegetation restoration of degraded red soil on earthworm population dynamics].

This study was conducted at the long-term experimental plots in Ecological Experimental Station of Red Soil in Yujiang County (28 degrees 15'30''N, 116 degrees 55'30''E ), Jiangxi Province, subtropical China. Earthworm population was investigated seasonally from May 1999 to February 2000, under different vegetations including four artificial woodlands [deciduous broadleaf woodland (Quercus chenii, Qc), evergreen broadleaf woodland (Schima superba, Ss), coniferous woodland (Pinus massonina, Pm) and mixed woodland (Schima superba-Pinus massonina, Sm)], two grasslands [gently-disturbed grassland (G1), undisturbed grassland (G2)] and control wasteland (CK). The results indicated that the population structure was very simple. Only Drawinda gisti characterized by pioneer was found. The seasonal averages of density and biomass were in the order of G2 > G1 > Qc > Ss > Pm > Sm > CK, and those of G2, G1 and Qc were significantly higher than those of the latters (P < 0.05). Seasonal fluctuations were obvious with dry-hot summer depressing the earthworm population sharply, leading to the aestivation of earthworm. Based on the variation coefficients of density and biomass, Qc had the highest ecosystem stability, followed by Sm and Ss, and G1, G2, and Pm had the lowest stability. The overall differentiation of earthworm population could be drawn through canonical discriminant analysis. There were significant correlations between earthworms and some soil properties (P < 0.01). Overall, the differentiation of earthworm population was driven by the quantity and quality of soil organic matter returned by the vegetations. Additionally, based on earthworm population, the importance of selecting appropriate vegetation types during the restoration of degraded red soil was emphasized.

Animals↗

PubMed1990

Crack users: the new AIDS risk group?

Crack cocaine, a smokable form of cocaine hydrochloride, is now widely available in American inner cities. Reports of high rates of unprotected sexual activity among crack users, coupled with reports of high rates of sexually transmitted diseases (STDs), have raised fears that this population of drug users may soon be contracting and disseminating sexually transmitted HIV. In a study of 205 black adolescent crack users conducted in Oakland and San Francisco, California, 101 respondents (49% of the sample) who reported using crack in combination with sexual activity were examined. Those respondents who reported having a history of one or more STD were compared using discriminant analysis (DA). A successful discrimination (canonical correlation = 0.61, p = 0.000) identified five variables that distinguished those with a STD history from those with no STD history: gender (being female) (p = 0.000), frequency of marijuana use (p = 0.005), response to the question; "Do you plan for sex or does it just happen?" (p = 0.002), response to the statement, "I use drugs to get away from my problems" (0.029), and response to the question, "Do you agree that sex doesn't feel as good when you use a condom?" (p = 0.006). The selection of these variables was thought to represent an underlying passivity in the way that crack users who combine crack use with sex approach sexual activity.

Acquired Immunodeficiency Syndrome↗

PubMed1993

Analysis of multivariate parallel-line bioassay with composite responses and composite doses, using canonical correlations.

The use of a composite response to estimate the relative potency in a multivariate parallel-line bioassay is described by Finney. Occasionally a multivariate bioassay has multiple drugs also. Such a situation arises, for example, when a treatment contains several drugs. A procedure for combining multiple responses and combining multiple drugs is proposed in this paper, in order to obtain point and interval estimates of the relative potency. A composite response and a composite dose level for this purpose are obtained by using canonical analysis.

Biological Assay↗

PubMed1987

[Discriminant analysis of hematological and serum biochemical values in cynomolgus monkey (Macaca fascicularis) bred and reared under the indoor individually-caged conditions].

The data on hematological and serum biochemical properties of laboratory-bred cynomolgus monkeys (Macaca fascicularis) at different ages were analyzed by discriminant analysis. All the animals had been bred and reared under uniform environmental conditions at Tsukuba Primate Center for Medical Science, N.I.H., Japan. The items used were as follows: red blood cell count (RBC), hematocrit value (Ht), hemoglobin concentration (Hb), mean corpuscular volume (MCV), white blood cell count (WBC), glutamic oxaloacetic transaminase activity (GOT), glutamic pyruvic transaminase activity (GPT), total protein concentration (TP), albumin concentration (ALB), albumin-globulin ratio (A/G), blood urea nitrogen (BUN), glucose concentration (GLU), total cholesterol concentration (TCHO), free cholesterol concentration (FCHO), triglyceride concentration (TG) and alkaline phosphatase activity (ALP). In total, 1086 animals in 10 age groups were examined. Data analyses were done with respect to the difference of sex. Discrimination was possible by Mahalanobis' generalized distance between centroids of groups. In canonical discriminant analysis (discriminant analysis with reduction of dimensionality), age was highly correlated to the value of the first canonical variate. From the approximate relative value of the eigenvector of the first canonical variate, the most discriminant variables are WBC, TP, ALB, A/G, TCHO, FCHO, TG, and ALP. It can be concluded that periodic measurement of these 8 parameters is necessary and sufficient to monitor the physiological conditions of growing monkeys.

Age Factors↗

PubMed1997

Neuropsychological predictors of adaptive kitchen behavior in geriatric psychiatry inpatients.

This study examined the degree to which demographic variables, psychiatric diagnosis, depression rating, and neuropsychological test performance predict adaptive kitchen behavior in geriatric psychiatry patients and normal elderly volunteers. Amixed group of 27 participants including 8 normal volunteers and 19 geriatric psychiatry inpatients underwent psychiatric evaluation, neuropsychological testing, and a kitchen skills assessment conducted in a natural setting. Both depression and dementia were prevalent among patients. The kitchen skills assessment was abnormal in 69% of patients, compared to none of the normal volunteers. Estimated premorbid IQs, psychiatric diagnosis, and neuropsychological test scores significantly predicted the pass/fail status on the kitchen skills assessment, but there was no effect for age, education, gender, or depression. The discriminant function analysis classified 92% of cases, and the canonical correlation coefficient was .84. Of the neuropsychological tests employed in the study, two tests involving visuospatial processing and attention were retained in the discriminant function analysis. The results are consistent with previous studies that suggest that visuospatial tasks are more predictive of instrumental activities of daily living than are cognitive tasks emphasizing verbal and memory abilities. In addition, we conclude that neuropsychological test data are useful and valid for the purpose of guiding clinical judgments regarding activities of daily living in geriatric psychiatry patients.

Activities of Daily Living↗

PubMed2004

Conservation and developmental control of alternative splicing in maebl among malaria parasites.

Genes of malaria parasites and other unicellular organisms have larger exons with fewer and smaller introns than metaozoans. Such differences in gene structure are perceived to extend to simpler mechanisms for transcriptional control and mRNA processing. Instead, we discovered a surprisingly complex level of post-transcriptional mRNA processing in analysis of maebl transcripts in several Plasmodium species. Mechanisms for internal alternative cis-splicing and exon skipping were active in multiple life cycle stages to change exon structure in the deduced coding sequence (CDS). The major alternatively spliced transcript utilized a less favorable acceptor splice site, which shifted codon triplet usage to a different CDS with a hydrophilic C terminus, changing the canonical type I membrane MAEBL product to a predicted soluble isoform. We found that developmental control of the alternative splicing pattern was distinct from the canonical splicing pattern. Western blot analysis indicated that MAEBL expression was better correlated with the appearance of the canonical ORF1 transcript. Together these data reveal that RNA metabolism in unicellular eukaryotes like Plasmodium is more sophisticated than believed and may have a significant role regulating gene expression in Plasmodium.

Alternative Splicing↗

PubMed1984

Associations between anterior temporal, masseter, and orbicularis oris muscle activity and craniofacial morphology in children.

In a sample of children with Class I (n = 18), Class II, Division 1 (n = 25) and Class II, Division 2 (n = 12) malocclusions, the relationship between jaw muscle activity and specific craniofacial variables has been quantified. Muscle data were obtained from the temporal, masseter, and orbicularis oris muscles at rest, in maximum intercuspation, and during clenching, jaw opening, and swallowing. Contrasts in means of the three skeletal groups identified differences in both the craniofacial and muscle variables. Orbicularis oris muscle amplitude was greater at rest and in maximum intercuspation in Class II, Division 2 subjects. Anterior temporal amplitude during clenching was significantly lower in Class II, Division 1 subjects. A principal component analysis reduced the data base, and three canonical correlations were identified at the 0.05 level of significance. Significant canonical correlations could not be found between the cephalometric data and clench, swallow, or jaw-opening tasks, which suggests no dependency between these factors. Two canonical correlations were found for the rest position data. A linear combination of masseter and orbicularis oris activity and incisor separation was correlated (r1 = 0.758) with a linear combination of mandibular unit length, upper and lower central incisor angulation, and SNOP. The second rest canonical correlation (r2 = 0.733) involved the anterior temporal muscle and a series of sixteen cephalometric variables. For the maximum intercuspation data, orbicularis oris amplitude was correlated with a linear combination of upper incisor angulation and SNOP variables (r1 = 0.727). The multivariate statistical analysis extracted a clinically significant association between orbicularis oris muscle activity and incisor position.

Cephalometry↗

PubMedDate not supplied

Brain natriuretic peptide and cyclic guanosine-3',5' monophosphate in pre-eclampsia.

The objective of this study is to determine the possibility that pre-eclampsia, a disease characterized by altered vascular tone, may result in altered levels of fetal BNP and cGMP, and to determine whether pre-eclampsia alters the maternal-fetal relationship of BNP and cGMP. Paired maternal and umbilical venous plasma levels of BNP and cGMP were determined in 13 pre-eclamptic and 9 normotensive primigravidas in the third trimester. Statistical analysis was performed using multivariate analysis of variance, linear regression, and canonical correlation. Overall, levels of cGMP were lower in pre-eclampsia (P < 0.03). Pre-eclampsia was also associated with an altered maternal-fetal relationship for BNP and cGMP (P < 0.008, P < 0.02, respectively). With pre-eclampsia, the maternal:fetal ratio was reduced for BNP and was increased for cGMP. Because of its role as a second messenger for many vasoactive hormones, we hypothesize that fetal cGMP levels may better reflect overall vascular tone than do individual hormones. Altered BNP and cGMP maternal-fetal homeostasis raises the possibility of maternal-fetal coordination of vascular control.

Biomarkers↗

PubMed1989

Metamemory perceptions in depressions of young and older adults.

This research investigated how depression in two age groups related to responses on a metamemory questionnaire (MMQ), and to the correspondence between MMQ self-reports and performance on memory tests. Forty-four younger and 56 older women were clinically assessed and completed both the MMQ and a series of experimental memory procedures. Data on 11 MMQ subscales were analyzed by analysis of variance, chi 2, and canonical correlation techniques. Compared with controls, depressed subjects tended to report more generalized and extensive memory difficulties, particularly in recent as opposed to remote memory, but were not deficient in basic metamemory knowledge and did not manifest different perceptions regarding age changes in memory or regarding its personal significance. There was no evidence for a differential impact of late-life depression on metamemory perceptions, reflected by the general absence of age-by-depression interactions. Cumulatively, self-reports correlated .598 with objective measures, a relationship that did not vary as a function of age or depression. Reports about the retention of "important" information and about the use of recall strategies were identified as the only self-report measures reliably associated with performance.

Adult↗

PubMed1997

Modeling of progressive glomerular injury in humans with lupus nephritis.

We studied glomerular function longitudinally for 36-120 mo in 21 patients undergoing treatment for diffuse, proliferative lupus nephritis. We determined glomerular filtration rate (GFR) and glomerular oncotic pressure (IIGC) and computed the two-kidney ultrafiltration coefficient (Kf) at 6- to 12-mo intervals. The relationships and cross talk among the three variables over time were then analyzed by eigenfunction regression and canonical correlations. We also performed a morphometric analysis of serial biopsies and computed single-nephron Kf in patent glomeruli at baseline and after 36-94 mo of follow-up. Patients were divisible into progressors (n = 12) or nonprogressors (n = 9) according to the presence or absence, respectively, of an irrevocable decline in GFR over time. Examination of longitudinal variables revealed GFR to be strongly related to Kf in all patients and inversely related to IIGC in progressors. By serial morphometric analysis we observed a threefold increase in the prevalence of global sclerosis in progressors but unchanged prevalence in nonprogressors. Whereas single-nephron Kf of remnant glomeruli increased to supernormal levels in nonprogressors, the absence of this compensatory phenomenon in progressors permitted GFR and Kf to decline in parallel with the declining number of functional glomeruli.

Adolescent↗

PubMedDate not supplied

Preseason hamstring muscle weakness associated with hamstring muscle injury in Australian footballers.

Hamstring muscle strain is the most prevalent injury in Australian Rules Football, accounting for 16% of playing time missed as a result of injury. Thirty-seven professional footballers from an Australian Football League team had preseason measurements of hamstring and quadriceps muscle concentric peak torque at 60, 180, and 300 deg/sec measured on a Cybex 340 dynamometer. Players were studied prospectively throughout the 1995 season. During that time, six players sustained clinically diagnosed hamstring muscle injuries that caused them to miss match-playing time. The injured hamstring muscles were all weaker than in the opposite leg in absolute values and hamstring-to-quadriceps muscle ratios. According to our t-test results, hamstring muscle injury was significantly associated with a low hamstring-to-quadriceps muscle peak torque ratio at 60 deg/sec on the injured side and a low hamstring muscle side-to-side peak torque ratio at 60 deg/sec. Flexibility (as measured by the sit-and-reach test) did not correlate with injury. Discriminant-function analysis using the two significant ratio variables resulted in a canonical correlation with injury of 0.4594 and correctly classified legs into injury groups with 77.4% success. These results indicate that preseason isokinetic testing of professional Australian Rules footballers can identify players at risk of developing hamstring muscle strains.

Adult↗