SEARCH · PubMed Health

Results for “root exudates”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 325 records · Page 18Linked to original sources

PubMedDate not supplied

[The distribution of introduced nitrogen-fixing bacteria in the rice root zone].

The most oxidized zone 0-1.5 mm of root, which determines the high number of aerobic diazotrophic microorganisms, the reduced zone 1.5-4.5 mm, where their quantity was decreased and maximum of anaerobic nitrogen-fixing bacteria development observed as well as the reducing zone 4.5-7.5 mm, in which aerobic, obligate and facultative anaerobic bacteria coexist, have been discovered in the rice root exudations and their decomposition products.

Aerobiosis↗

PubMed2003

[Effects of rice plants on methane emission from paddy fields].

Methane emission from rice paddy fields is the net result of the combination of many processes, i.e., CH4 production, CH4 oxidation and CH4 transportation in paddy soil. Rice plants play a key role in the CH4 emission from paddy fields, particularly in all the processes involved. The positive and negative effects of rice plants on CH4 emission from paddy fields are well recognized as the main factors influencing the temporal variation of CH4 emission flux in paddy field. Process-based studies about the effects of rice plants on methane emission from paddy fields were summarized, and different roles of rice plants on this emission were discussed. Root exudates and litters of rice plants could serve as the substrate for methanogenesis and enhance the CH4 production of paddy soils, resulting in a high CH4 emission peak, particularly in rice late growing season. Rhizospheric CH4 oxidation induced by rice root-excreted oxygen constitutes a main biogenic sink of CH4, which could account for 36-90% of CH4 produced in paddy soil over the entire growing season of rice. Up to 80% and more of CH4 released from rice field during a growing season could be emitted by rice plant-mediated transport. The fully developed aerenchyma of rice plants could be of importance in CH4 emission during rice growing seasons, and responsible for the CH4 emission peak observed at rice early growing season.

Methane↗

PubMed2001

Possible role of root border cells in detection and avoidance of aluminum toxicity.

Root border cells are living cells that surround root apices of most plant species and are involved in production of root exudates. We tested predictions of the hypothesis that they participate in detection and avoidance of aluminum (Al) toxicity by comparing responses of two snapbean (Phaseolus vulgaris) cultivars (cv Dade and cv Romano) known to differ in Al resistance at the whole-root level. Root border cells of these cultivars were killed by excess Al in agarose gels or in simple salt solutions. Percent viability of Al-sensitive cv Romano border cells exposed in situ for 96 h to 200 microM total Al in an agarose gel was significantly less than that of cv Dade border cells; similarly, relative viability of harvested cv Romano border cells was significantly less than that of cv Dade cells after 24 h in 25 microM total Al in a simple salt solution. These results indicate that Al-resistance mechanisms that operate at the level of whole roots also operate at the cellular level in border cells. Al induced a thicker mucilage layer around detached border cells of both cultivars. Cultivar Dade border cells produced a thicker mucilage layer in response to 25 microM Al compared with that of cv Romano cells after 8 h of treatment and this phenomenon preceded that of observed cultivar differences in relative cell viability. Release of an Al-binding mucilage by border cells could play a role in protecting root tips from Al-induced cellular damage.

Aluminum↗

PubMed2004

Uptake of weathered DDT in vascular plants: potential for phytoremediation.

Since the discovery of its insecticidal properties and its subsequent widespread use, DDT [2,2-bis(chlorophenyl)-1,1,1-trichloroethane] has accumulated in the environment, having a wide range of adverse effects on nontarget species. Due to their hydrophobicity, DDT and other persistent organic pollutants are difficult to remove from contaminated soils, and increasingly so through time as weathering occurs. Phytoremediation is an emerging plant-based technology that may be used to cost-effectively remove or neutralize contaminants in the environment. For some phytoremediation strategies, it must first be possible to translocate hydrophobic chemicals across the root and through the shoot via an aqueous transpiration stream. The objective of this study was to compare the ability of five plant varieties (zucchini, tall fescue, alfalfa, rye grass, and pumpkin) to mobilize and translocate DDT. Plants were grown in the greenhouse in soil contaminated with DDT and its metabolites, DDD and DDE (sigmaDDT refers to all of DDT, DDD, and DDE) at two concentrations (high approximately 3700 ng/g, and low approximately 150 ng/g). All trays were covered with laboratory Parafilm to limit volatilization. Cucurbita pepo species (pumpkin and zucchini) achieved the highest translocation and bioaccumulation factors, and also extracted the highest absolute amounts of sigmaDDT from both the high and low sigmaDDT soils. In the high sigmaDDT soil treatment, pumpkin accumulated 1519 ng of sigmaDDT in the roots and 57,536 ng of sigmaDDT in the shoots, and zucchini accumulated 2043 ng of sigmaDDT in the roots and 35,277 ng of sigmaDDT in the shoots. With the exception of alfalfa and pumpkin, principal component analysis detected no preferential translocation or transformation of sigmaDDT compounds within the plant. The success of the Cucurbita pepo species in this study to extract and translocate such hydrophobic molecules may be related to their high transpiration volume, large above-ground biomass, and composition of root exudates. This suggests potential for their application in phytoremediation.

Biodegradation, Environmental↗

PubMed2001

Growth of AM fungi on in vitro root organ culture of Sorghum vulgare and Saccharum officinarum.

Spores of Gl mosseae and Gig gigantea germinated on minimal medium produced extraradical mycelium. Gl. mosseae infected roots of S. officinarum in in vitro condition were inoculated in M medium with in vitro cultured roots of Sorghum vulgare (test roots). From the infected root of S. officinarum, the mycelium developed and it infected the test roots. The roots developed new mycelia and further the mycelia produced a few hyaline spores. In MS medium combined with soil extract, root exudate, thiamine HCl and inositol combination, spore germination and germ tube growth were higher when compared with other media.

Culture Techniques↗

PubMed1989

Requirement for chemotaxis in pathogenicity of Agrobacterium tumefaciens on roots of soil-grown pea plants.

Agrobacterium tumefaciens Tn5 mutants deficient in chemotaxis to root exudates were used to study the significance of chemotaxis in crown gall pathogenesis. Mutants deficient in motility and in chemotaxis were fully virulent when inoculated by direct immersion in inoculum, followed by growth for 2 weeks in moist growth pouches. Ability of mutant bacteria to move through soil to infect roots was tested by planting wounded seedlings into air-dried soil or sand that had been infested with inoculum. Mutant bacteria were almost as virulent as the parent on plants grown in sand but were avirulent on soil-grown plants.

Chemotaxis↗

PubMed2004

Evaluation of agriculture-based phytoremediation in Pacific island ecosystems using trisector planters.

It is difficult to directly evaluate the efficacy of phytoremediation of petroleum hydrocarbon contaminants embedded in deep soil layers, especially if the contaminants are of relatively low concentration and are unevenly distributed. This report describes the greenhouse and laboratory experiments carried out to evaluate a field demonstration project. A trisector planter was designed to simulate field conditions, including soil profiles and field management of the trees selected. The third or bottom section of the planter was spiked with known quantities of 6 diesel-fuel components and the reduction of their concentrations was monitored after 200 days under the influence of the plant root systems. Results are statistically compared; among the three tree species used, milo (Thespesia populnea) and kou (Cordia subcordata) are more effective than false sandalwood (Myoporum sandwicense) in reducing the concentration of the spiked contaminant. Enumerations of populations of hydrocarbon-degrading microoorganisms in the bottom section suggest that biodegradation may be affected by the response of microorganisms to both the "close rhizosphere" (soil within 1 mm of the root) and the "expanded rhizosphere" (soil in the bottom section after root removal). Root exudates leached from the upper sections could be responsible for the expanded rhizosphere effect in the bottom section.

Agriculture↗

PubMed2004

Nod factor-treated Medicago truncatula roots and seeds show an increased number of nodules when inoculated with a limiting population of Sinorhizobium meliloti.

Medicago truncatula is a model legume plant that interacts symbiotically with Sinorhizobium meliloti, the alfalfa symbiont. This process involves a molecular dialogue between the bacterium and the plant. Legume roots exude flavonoids that induce the expression of a set of rhizobial genes, the nod genes, which are essential for nodulation and determination of the host range. In turn, nod genes control the synthesis of lipo-chito-oligosaccharides (LCOs), Nod factors, which are bacteria-to-plant signal molecules mediating recognition and nodule organogenesis. M. truncatula roots or seeds have been treated with Nod factors and hydroponically growing seedlings have been inoculated with a limiting population of S. meliloti. It has been shown that submicromolar concentrations of Nod factors increase the number of nodules per plant on M. truncatula. Compared with roots, this increase is more noticeable when seeds are treated. M. truncatula seeds are receptive to submicromolar concentrations of Nod factors, suggesting the possibility of a high affinity LCO perception system in seeds or embryos as well.

Medicago truncatula↗

PubMed2004

Phytoremediation of petroleum hydrocarbons in tropical coastal soils. II. Microbial response to plant roots and contaminant.

GOAL, SCOPE AND BACKGROUND: The goal of this study was to understand the interaction between plants and microorganisms during petroleum-hydrocarbon bioremediation in Pacific Islands coastal soils. Total bacteria and hydrocarbon-degrading microorganisms population dyanamics were examined in the rhizospheres of tropical trees and shrubs, which were evaluated for their phytoremediation potential in a greenhouse experiment. The respective and combined effects of plant roots and diesel contaminant on the microbial populations were determined in relation to diesel fuel depletion. An increase in the grading populations size of the hydrocarbon-degrading populations of microbes, elicited by rhizodeposition, is generally regarded as conducive to an enhanced degradation of petroleum hydrocarbon pollutants in vegetated soil. METHODS: The soil was a coastal sandy loam (pH 7.8) which was artificially contaminated with 10 g of No. 2 diesel fuel/kg soil or left uncontaminated. The pots were irrigated with fertilizer and 1% NaCl. The enumerations were carried out in the contaminated and uncontaminated rhizospheres of three trees, kiawe (Prosopis pallida), milo (Thespesia populnea), and kou (Cordia subcordata) and three shrubs, beach naupaka (Scaevola sericea), false sandalwood (Myoporum sandwicense), and oleander (Nerium oleander). Unplanted control soils were included in the experiment. Total bacteria and phenanthrene-degrading bacteria were enumerated on plates. Diesel- and pristane-degrading microorganisms were enumerated by the most-probable-number technique in tissue-culture plates. RESULTS AND DISCUSSION: All four types of microorganisms responded to the rhizosphere of the 6 plants in uncontaminated soil and to the diesel contaminant in unplanted soil. In contaminated rhizospheres, no effect of the plant on the hydrocarbon-degrader numbers was visible. Total bacteria responded more to the plant roots than to the contaminant. The phenanthrene-degrading bacteria and pristane-degrading microorganisms were more influenced by the contaminant than by the plants. The diesel-degrading microorganisms were equally stimulated by the plants and the contaminant. The numbers of hydrocarbon degraders were similar in the contaminated rhizospheres of the three effective plants (kiawe, kou, and milo) and in those of the three ineffective shrubs. CONCLUSION: The results suggest the quality of the rhizodeposition is plant-dependent and governs the type of diesel-degrader populations that will be enhanced by a given plant. RECOMMENDATIONS AND OUTLOOK: In the proposed phytoremediation-benefit model plant roots maintain high levels of hydrocaron degraders in uncontaminated soil. When the root enters a contaminated zone of soil, those hydrocarbon degraders that prefer the contaminant would switch to the contaminant as a carbon source, effectively removing the hydrocarbons. If the root exudates and the contaminant are equally attractive to the hydrocarbon degraders, the contaminant degradaton would be less effective.

Biodegradation, Environmental↗

PubMed1994

Establishing and maintaining specific pathogen free (SPF) conditions in aqueous solutions using ozone.

The paper discusses the use of ozone in space applications for the elimination of pathogens, and the enhancement of the oxidation potential of ozone using hydrogen peroxide and ultraviolet radiation. These combinations will be possible to set up in space conditions. The sterilizing effect versus free radical generation is an important equilibrium to establish when specific pathogen free conditions are wanted in aqueous solutions containing organic matter. In situ sterilization of plant roots in hydroponic systems, as well as the oxidation of root exudates, will be discussed. The paper will contain examples of the chemical interaction of ozone with some of the other compounds found in hydroponic systems.

Animals↗

PubMed2000

Axenic germination of Scutellospora erythropa and Scutellospora nigra in in vitro conditions.

Spores of Scutellospora erythropa and Scu. nigra isolated from neem rhizosphere soils from coastal regions of Chennai were tested for axenic germination in in vitro conditions. They showed positive results in media of different composition using root exudates, soil extract, thiamine HCl and inositol. The combined medium increased the spore germination in Scu. erythropa and in Scu. nigra over water agar control. The germ tube often grew up to 3.8 cm on combined media but no vegetative spores and extramatrical auxillary cells were observed during the experiment. There was significant increase in hyphal growth when the roots were introduced into the medium, 3 days after spore germination.

Fungi↗

PubMed2003

Rice seedlings release momilactone B into the environment.

Since the growth inhibitor momilactone B was found recently in root exudates of rice (Oryza sativa L.), 3-day-old rice seedlings were transferred to hydroponic culture and the level of momilactone B released into the environment from the seedlings was measured. At day 15 after transfer, the level of momilactone B in the culture solution was 1.8 nmol per seedling compared with endogenous levels of 0.32 and 0.63 nmol per root and shoot, respectively, suggesting that rice seedlings actively releases momilactone B into the culture solution. This release must occur from the roots because only rice roots were immersed in the culture solution. Momilactone B inhibited the growth of ten cress (Lepidium sativum L.) seedlings at concentrations greater than 3 microM. Ten rice seedlings were incubated with ten cress seeds in a Petri dish containing 1 ml of medium, the medium contained 18 nmol of momilactone B, which came to 18 microM. This level of momilactone B was enough to reveal growth inhibition of the cress seedlings. Release level of momilactone B and its effectiveness as a growth inhibitor suggest that it may play an important role in rice allelopathy.

Brassicaceae↗

PubMed2006

Response of rice (Oryza sativa) with root surface iron plaque under aluminium stress.

BACKGROUND AND AIMS: Rice (Oryza sativa) is an aquatic plant with a characteristic of forming iron plaque on its root surfaces. It is considered to be the most Al-tolerant species among the cereal crops. The objective of this study was to determine the effects of root surface iron plaque on Al translocation, accumulation and the change of physiological responses under Al stress in rice in the presence of iron plaque. METHODS: The japonica variety rice, Koshihikari, was used in this study and was grown hydroponically in a growth chamber. Iron plaque was induced by exposing the rice roots to 30 mg L(-1) ferrous iron either as Fe(II)-EDTA in nutrient solution (6 d, Method I) or as FeSO(4) in water solution (12 h, Method II). Organic acid in root exudates was retained in the anion-exchange resin and eluted with 2 m HCl, then analysed by high-performance liquid chromatography (HPLC) after proper pre-treatment. Fe and Al in iron plaque were extracted with DCB (dithionite-citrate-bicarbonate) solution. KEY RESULTS AND CONCLUSIONS: Both methods (I and II) could induce the formation of iron plaque on rice root surfaces. The amounts of DCB-extractable Fe and Al on root surfaces were much higher in the presence of iron plaque than in the absence of iron plaque. Al contents in root tips were significantly decreased with iron plaque; translocation of Al from roots to shoots was significantly reduced with iron plaque. Al-induced secretion of citrate was observed and iron plaque could greatly depress this citrate secretion. These results suggested that iron plaque on rice root surfaces can be a sink to sequester Al onto the root surfaces and Fe ions can pre-saturate Al-binding sites in root tips, which protects the rice root tips from suffering Al stress to a certain extent.

Adsorption↗

PubMed2005

Visualization of interactions between a pathogenic and a beneficial Fusarium strain during biocontrol of tomato foot and root rot.

The soilborne fungus Fusarium oxysporum f. sp. radicis-lycopersici causes tomato foot and root rot (TFRR), which can be controlled by the addition of the nonpathogenic fungus F. oxysporum Fo47 to the soil. To improve our understanding of the interactions between the two Fusarium strains on tomato roots during biocontrol, the fungi were labeled using different autofluorescent proteins as markers and subsequently visualized using confocal laser scanning microscopy. The results were as follows. i) An at least 50-fold excess of Fo47over F. oxysporum f. sp. radicis-lycopersici was required to obtain control of TFRR. ii) When seedlings were planted in sand infested with spores of a single fungus, Fo47 hyphae attached to the root earlier than those of F. oxysporum f. sp. radicis-lycopersici. iii) Subsequent root colonization by F. oxysporum f. sp. radicis-lycopersici was faster and to a larger extent than that by Fo47. iv) Under disease-controlling conditions, colonization of tomato roots by the pathogenic fungus was significantly reduced. v) When the inoculum concentration of Fo47 was increased, root colonization by the pathogen was arrested at the stage of initial attachment to the root. vi) The percentage of spores of Fo47 that germinates in tomato root exudate in vitro is higher than that of the pathogen F. oxysporum f. sp. radicis-lycopersici. Based on these results, the mechanisms by which Fo47 controls TFRR are discussed in terms of i) rate of spore germination and competition for nutrients before the two fungi reach the rhizoplane; ii) competition for initial sites of attachment, intercellular junctions, and nutrients on the tomato root surface; and iii) inducing systemic resistance.

Bacterial Proteins↗

PubMed1994

Dynamics of microorganism populations in recirculating nutrient solutions.

This overview covers the basic microbial ecology of recirculating hydroponic solutions. Examples from NASA and Soviet CELSS tests and the commercial hydroponic industry will be used. The sources of microorganisms in nutrient solutions include air, water, seeds, plant containers and plumbing, biological vectors, and personnel. Microbial fates include growth, death, and emigration. Important microbial habitats within nutrient delivery systems are root surfaces, hardware surfaces (biofilms), and solution suspension. Numbers of bacteria on root surfaces usually exceed those from the other habitats by several orders of magnitude. Gram negative bacteria dominate the microflora with fungal counts usually much lower. Trends typically show a decrease in counts with increasing time unless stressed plants increase root exudates. Important microbial activities include carbon mineralization and nitrogen transformations. Important detrimental interactions include competition with plants, and human and plant pathogenesis.

Bacteria↗

PubMed2003

Identification of Streptomyces coelicolor proteins that are differentially expressed in the presence of plant material.

Streptomyces coelicolor and Lemna minor were used as a model to study the modulation of bacterial gene expression during plant-streptomycete interactions. S. coelicolor was grown in minimal medium with and without L. minor fronds. Bacterial proteomes were analyzed by two-dimensional gel electrophoresis, and a comparison of the two culture conditions resulted in identification of 31 proteins that were induced or repressed by the presence of plant material. One-half of these proteins were identified by peptide mass fingerprinting by using matrix-assisted laser desorption ionization-time of flight mass spectrometry. The induced proteins were involved in energetic metabolism (glycolysis, pentose phosphate pathway, oxidative phosphorylation), protein synthesis, degradation of amino acids, alkenes, or cellulose, tellurite resistance, and growth under general physiological or oxidative stress conditions. The repressed proteins were proteins synthesized under starvation stress conditions. These results suggest that root exudates provide additional carbon sources to the bacteria and that physiological adaptations are required for efficient bacterial growth in the presence of plants.

Araceae↗

PubMed2003

Elucidation of the biosynthetic pathway of the allelochemical sorgoleone using retrobiosynthetic NMR analysis.

NMR analyses of the labeling pattern obtained using various 13C-labeled precursors indicated that both the lipid tail and the quinone head of sorgoleone, the main allelopathic component of the oily root exudate of Sorghum bicolor, were derived from acetate units, but that the two moieties were synthesized in different subcellular compartments. The 16:3 fatty acid precursor of the tail is synthesized by the combined action of fatty-acid synthase and desaturases most likely in the plastids. It is then exported out of the plastids and converted to 5-pentadecatriene resorcinol by a polyketide synthase. This resorcinol intermediate was identified in root hair extracts. The lipid resorcinol intermediate is then methylated by a S-adenosylmethionine-dependent O-methyltransferase and subsequently dihydroxylated by a P450 monooxygenase to yield the reduced form of sorgoleone.

Benzoquinones↗

PubMed2005

Biomimetic measurement of allelochemical dynamics in the rhizosphere.

Polydimethylsiloxane (PDMS) materials were used to quantify levels of the photosynthesis inhibitor sorgoleone in the undisturbed rhizosphere of sorghum plants. The materials used included stir bars coated with PDMS (stir bar sorptive extraction), technical grade optical fiber coated with a thin film of PDMS (matrix-solid phase microextraction), and PDMS tubing. PDMS tubing retained the most sorgoleone. As analyzed by high performance liquid chromatography, amounts of sorgoleone retained on the PDMS materials increased with time. Other materials tested (polyurethane foam plugs, C18 and Tenax disks, and resin capsules) proved less suitable, as they were subject to sometimes extensive penetration by fine root hairs. These results demonstrate the potential for PDMS-based materials to monitor the release of allelochemicals in the undisturbed rhizosphere of allelopathic plants. Unlike extraction procedures that recover all available compounds present in the soil, PDMS functions in a manner more analogous to plant roots in sorbing compounds from soil solution or root exudates. Information on chemical dynamics in the rhizosphere is crucial for evaluating specific hypotheses of allelopathic effects, understanding allelopathic mechanisms, and assessing the importance of allelopathic processes in plant communities.

Benzoquinones↗