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At least 325 records · Page 18Linked to original sources

Wave scattering by discrete breathers.

We present a theoretical study of linear wave scattering in one-dimensional nonlinear lattices by intrinsic spatially localized dynamic excitations or discrete breathers. These states appear in various nonlinear systems and present a time-periodic localized scattering potential for plane waves. We consider the case of elastic one-channel scattering, when the frequencies of incoming and transmitted waves coincide, but the breather provides with additional spatially localized ac channels whose presence may lead to various interference patterns. The dependence of the transmission coefficient on the wave number q and the breather frequency Omega(b) is studied for different types of breathers: acoustic and optical breathers, and rotobreathers. We identify several typical scattering setups where the internal time dependence of the breather is of crucial importance for the observed transmission properties.

Journal Article↗

Compactlike discrete breathers in systems with nonlinear and nonlocal dispersive terms.

Discrete breathers with purely anharmonic short-range interaction potentials localize superexponentially becoming compactlike. We analyze their spatial localization properties and their dynamical stability. Several branches of solutions are identified. One of them connects to the well-known Page and Sievers-Takeno lattice modes, another one connects with the compacton solutions of Rosenau. The absence of linear dispersion allows for extremely long-lived time-quasiperiodic localized excitations. Adding long-range anharmonic interactions leads to an extreme case of competition between length scales defining the spatial breather localization. We show that short- and long-range interaction terms competition results in the appearance of several characteristic crossover lengths and essentially breaks the concept of compactness of the corresponding discrete breathers.

Journal Article↗

Orientation tuning properties of simple cells in area V1 derived from an approximate analysis of nonlinear neural field models.

We present a general approximation method for the mathematical analysis of spatially localized steady-state solutions in nonlinear neural field models. These models comprise several layers of excitatory and inhibitory cells. Coupling kernels between and inside layers are assumed to be gaussian shaped. In response to spatially localized (i.e., tuned) inputs, such networks typically reveal stationary localized activity profiles in the different layers. Qualitative properties of these solutions, like response amplitudes and tuning widths, are approximated for a whole class of nonlinear rate functions that obey a power law above some threshold and that are zero below. A special case of these functions is the semilinear function, which is commonly used in neural field models. The method is then applied to models for orientation tuning in cortical simple cells: first, to the one-layer model with "difference of gaussians" connectivity kernel developed by Carandini and Ringach (1997) as an abstraction of the biologically detailed simulations of Somers, Nelson, and Sur (1995); second, to a two-field model comprising excitatory and inhibitory cells in two separate layers. Under certain conditions, both models have the same steady states. Comparing simulations of the field models and results derived from the approximation method, we find that the approximation well predicts the tuning behavior of the full model. Moreover, explicit formulas for approximate amplitudes and tuning widths in response to changing input strength are given and checked numerically. Comparing the network behavior for different nonlinearities, we find that the only rate function (from the class of functions under study) that leads to constant tuning widths and a linear increase of firing rates in response to increasing input is the semilinear function. For other nonlinearities, the qualitative network response depends on whether the model neurons operate in a convex (e.g., x(2)) or concave (e.g., sqrt(x)) regime of their rate function. In the first case, tuning gradually changes from input driven at low input strength (broad tuning strongly depending on the input and roughly linear amplitudes in response to input strength) to recurrently driven at moderate input strength (sharp tuning, supralinear increase of amplitudes in response to input strength). For concave rate functions, the network reveals stable hysteresis between a state at low firing rates and a tuned state at high rates. This means that the network can "memorize" tuning properties of a previously shown stimulus. Sigmoid rate functions can combine both effects. In contrast to the Carandini-Ringach model, the two-field model further reveals oscillations with typical frequencies in the beta and gamma range, when the excitatory and inhibitory connections are relatively strong. This suggests a rhythmic modulation of tuning properties during cortical oscillations.

Cerebral Cortex↗

Self-organization of polarized cell signaling via autocrine circuits: computational model analysis.

Recent studies have suggested that autocrine signaling through epidermal growth factor receptor (EGFR) might be involved in generating or maintaining an intrinsic polarity in tissue cells, possibly via spatial localization of EGFR-mediated signaling. The difficulty of experimental investigation of autocrine signaling makes especially valuable an application of computational modeling for critical hypotheses about the dynamic operation of the underlying signaling circuits, both intracellular and extracellular. Toward this end, we develop and analyze here a spatially distributed dynamic computational model of autocrine EGFR signaling. Under certain conditions, the model spontaneously evolves into a state wherein sustained signaling is spatially localized on smaller than cell dimension, conferring a polarity to the otherwise nonpolar model cell. Conditions of a sufficiently large rate of autocrine EGFR ligand release and of a sufficiently small exogenous ligand concentration are qualitatively consistent with experimental observations of EGFR-mediated migration. Thus, computational analysis supports the concept that autocrine EGFR signaling circuits could play a role in helping generate and/or maintain an intrinsic cell spatial polarity, possibly related to migration as well as tissue organization. We additionally offer particular suggestions for critical nodes in the EGFR signaling circuits governing this self-organization capability.

Adaptor Proteins, Signal Transducing↗

Breathers in two-dimensional neural media.

In this Letter we show how nontrivial forms of spatially localized oscillations or breathers can occur in two-dimensional excitable neural media with short-range excitation and long-range inhibition. The basic dynamical mechanism involves a Hopf bifurcation of a stationary pulse solution in the presence of a spatially localized input. Such an input could arise from external stimuli or reflect changes in the excitability of local populations of neurons as a precursor for epileptiform activity. The resulting dynamical instability breaks the underlying radial symmetry of the stationary pulse, leading to the formation of a nonradially symmetric breather. The number of breathing lobes is consistent with the order of the dominant unstable Fourier mode associated with perturbations of the stationary pulse boundary.

Algorithms↗

Cortical noradrenaline depletion eliminates sparing of spatial learning after neonatal frontal cortex damage in the rat.

The possibility that cortical noradrenaline (NA) is necessary for the sparing of function that occurs after neonatal frontal cortex damage was examined. Spatial localization by rats with frontal cortex damage sustained neonatally was better than by rats with similar damage sustained as adults. The sparing was abolished in rats depleted of cortical noradrenaline by means of neonatal 6-hydroxydopamine (6-OHDA) administration. NA depletion alone did not affect spatial localization. These data are consistent with the notion that NA has some general function in maintaining some forms of plasticity in posterior cortex.

Animals↗

Forward propagating reinforcement learning--biologically plausible learning method for multi-layer networks.

We introduce a biologically plausible method of implementing reinforcement learning to multi-layer neural networks. The key idea is to spatially localize the synaptic modulation induced by reinforcement signals, proceeding downstream from the initial layer to the final layer. Since reinforcement signals are known to be broadcast signals in the actual brain, we need two key assumptions, inhibitory backward connections and bypass to output units, to spatially localize the effect of delayed reinforcement without breaking the basic laws of neurophysiology.

Animals↗

Transmural saturation transfer analysis of the creatine kinase system in the mammalian heart.

31P NMR spatial localization and saturation transfer techniques were combined to enable the transmural measurement of the forward creatine kinase (CK) rate (ATP:creatine N-phosphotransferase, EC 2.7.3.2.) in the in vivo canine myocardium. Five epicardial towards endocardial regions of the left ventricle (LV) were simultaneously examined using spatially localized voxels. Although intraleft ventricular CP/ATP ratios were constant, the pseudo first order rate constant (k') and the forward creatine kinase rate (Rf) displayed a 61% variation across the LV wall. Because CK levels and calculated [ADP], [CP] and pH are transmurally invariant in the normal left ventricle, the observed changes in the Rf could not be explained by changes in the absolute levels of these substrates and of creatine kinase. In addition, because myocardial oxygen consumption rates are known to be higher in the endocardium, these results imply that forward creatine kinase rates are not directly related to oxidative phosphorylation rates.

Adenosine Diphosphate↗

Cardiac applications of EPR imaging.

This review summarizes the development and application of a variety of EPR imaging modalities including spatial, spectral-spatial (spectroscopic), gated-imaging and oxygen mapping to cardiovascular studies. It has been hypothesized that free radical metabolism, oxygenation and nitric oxide generation in biological organs such as the heart may vary over the spatially defined tissue structure. We have developed instrumentation optimized for 3D spatial and 3D or 4D spectral-spatial imaging of free radicals at 1.2 GHz. Using this instrumentation high quality 3D spectral-spatial imaging of nitroxyl (nitroxide) metabolism was performed, as well as spatially localized measurements of oxygen concentrations, based on the oxygen-dependent line-broadening of the EPR spectrum. Both exogenously infused probes and endogenous radicals were used to obtain the images. It is demonstrated that the EPR imaging is a powerful tool which can provide unique information regarding the spatial localization of free radicals, oxygen and nitric oxide in biological organs and tissues.

Algorithms↗

Spectroscopic imaging of circular voxels with a two-dimensional Fourier-series window technique.

Spatial localization with the spectroscopic imaging technique is normally implemented with the Fourier-transform approach, yielding rectangular voxels, with potentially significant cross-voxel contamination. Multidimensional Fourier-series window (FSW) is an alternate approach that generates single voxels of predetermined shape, with minimal out-of-voxel contamination. The spatial location of the voxel is shifted by means of postacquisition processing. A two-dimensional circular voxel is introduced, which for many in vivo applications is a good match of the region of interest. Phantom images illustrate the spatial distribution of signal intensity within the circular FSW voxels. Phantom spectroscopic studies show excellent spatial localization, with no detectable out-of-voxel contamination. The circular FSW voxel approach is implemented in human and animal model studies, demonstrating the technique's utility. This arbitrary shape approach can be extended to three dimensions, defining, for example, cylinders, spheres, or ellipsoids.

Adenosine Triphosphate↗

[Cognitive set depends on the involvement of the ventral and dorsal visual systems].

Healthy adults were examined in three series of experiments with formation of an unconscious visual set: 1) the set was formed by repeated presentation of pairs of unequal circles (control); 2) an additional task of recognition of words/pseudowords was introduced into the context of the set-forming trials; 3) in the task additionally introduced, a subject had to spatially localize a certain target letter in a letter matrix. Scores of stability of the visual set to circles were compared. Coherence of the cortical electric activity in the alpha band was analyzed. We revealed a significant decrease in stability (rigidity) of the nonverbal visual set in the series with the additional task of spatial localization of the target stimulus. On the contrary, the set rigidity increased in the series with additional recognition of the verbal stimulus. EEG coherence patterns and behavioral data suggest that successful cognitive performance that demands dynamic situation-dependent shifts of unconscious sets takes place under conditions of alternation of tasks involving, predominantly, either the ventral ("what?") or dorsal ("where?") visual streams and, respectively, anterior or posterior systems of selective attention.

Adult↗

Transmural distribution of 2-deoxyglucose uptake in normal and post-ischemic canine myocardium.

This investigation was performed to determine (i) whether 31P spatially localized 31P NMR spectroscopy could be utilized to determine the transmural distribution of 2-deoxyglucose (2DG) uptake in the in vivo canine heart and (ii) whether transmural 2DG uptake would be affected by a preceding ischemic insult. 2DG was infused and the accumulation of 2-deoxyglucose-6-phosphate (2DGP) was monitored (by means of spatially localized 31P NMR) in control hearts, in pharmacologically hyperperfused hearts, and in hearts subjected to four (5 min) occlusions of the left anterior descending coronary artery. Myocardial blood flow was measured with radioactive microspheres. In control hearts, subendocardial (ENDO) 2DGP contents were significantly higher than those in the subepicardium (EPI) being 3.8 +/- 0.3 and 2.2 +/- 0.2 mumol/g, respectively; the ENDO/EPI ratio of 2DGP was 1.70 +/- 0.21. During hyperperfusion blood flow increased approximately four-fold but 2DGP accumulation was not altered. ATP levels in post-ischemic myocardium were significantly decreased (ENDO more than EPI) and 2DGP accumulation in each layer was increased (p < 0.01 vs control); however, the ENDO/EPI ratio of 2DGP was not altered. 2DG infusion induced a marked elevation of blood insulin and norepinephrine levels. These data demonstrate that in the presence of high blood levels of 2DG and insulin: (i) 2DGP accumulation can be measured in the in vivo canine heart; (ii) in normal hearts 2DG uptake is more pronounced in the inner layers of the left ventricular wall (this transmural 2DG uptake gradient is not due to subendocardial hypoperfusion); and (iii) 2DG uptake is greater in the post-ischemic heart but the ENDO/EPI gradient of 2DG uptake is not altered indicating that the more severe ischemic insult in the subendocardium does not result in a disproportionate increase in 2DG uptake in that region of the myocardium. Although 2DG uptake patterns in this model most probably reflect those of glucose (at comparable glucose and insulin levels), quantitative extrapolations with regard to the rate of glucose uptake are not possible from the present data.

Animals↗

Modulation of urokinase-type and tissue-type plasminogen activator occurs at an early stage of progressing stages of chronic venous insufficiency.

Chronic venous insufficiency (CVI) progresses through a series of clinical stages, from healthy skin to poorly healing leg ulcers. The aim of this study was to analyse the distribution pattern and activity level of urokinase-type (uPA) and tissue-type plasminogen activators (tPA) in normal skin and in tissue biopsies of progressing stages of CVI, prior to and including venous ulceration. Biopsies 6 mm thick were taken from 14 healthy volunteers and 37 patients with 5 different stages of CVI: telangiectases; stasis dermatitis; hyperpigmentation; lipodermatosclerosis; and leg ulcer. Changes in the enzymatic activity and spatial localization of uPA and tPA during the progression of CVI were examined using in situ histological zymography. Normal skin and skin with telangiectases showed a punctate PA activity, consisting of both uPA and tPA activity. As CVI progressed, an increase in the distribution of uPA and a decrease in tPA activity was observed. The spatial localization of uPA was widespread within the dermis of biopsies from stasis dermatitis and lipodermatosclerosis and was associated in particular with the dermoepidermal junction. Hyperpigmented skin revealed a pattern of PA expression similar to that of healthy skin. However, leg ulcer specimens exhibited peak levels of uPA with little tPA. Furthermore, a plasminogen-independent protease activity that was not present in any of the earlier stages of CVI appeared. Our results indicate that there are profound changes in PA activity during the progression of CVI and that these changes begin early in CVI, for example, in stasis dermatitis. We hypothesize that the balance or imbalance of the PA activity in the later stages of CVI is an important pathogenic factor for the development of venous leg ulcer.

Adult↗

Spatial distribution of cell adhesion molecules on the peritoneal surface in the cecal perforation-induced peritonitis.

For understanding the immunological functions of the peritoneum, spatial localization of integrins and their ligands was studied by immuno-SEM on the peritoneal surface of mice with cecal perforation-induced peritonitis. The cecal peritoneum 24 hr after perforation was stained with specific antibodies against LFA-1, Mac-1, VLA-4, ICAM-1, VCAM-1, and fibronectin diluted with cold University of Wisconsin (UW) solution in conjunction with immuno-gold labeling. The spatial localization of those cell adhesion molecules was detected by backscatter electron (BSE) imaging with field emission scanning electron microscope (FESEM). Numerous leukocytes with diverse surface ultrastructure were observed on the peritoneal surface by FESEM. Some leukocytes were in contact with mesothelial cells, and others adhered to the exposed underlying connective tissue. The BSE imaging showed the ubiquitous distribution of Mac-1 on all membrane domains of leukocytes, i.e., cell body, ruffles, and microvilli. In contrast, predominant expressions of LFA-1 and VLA-4 were discernible on ruffles/microvilli of some leukocytes. The mesothelial cells remaining in the inflamed area expressed both ICAM-1 and VCAM-1 on their microvilli. The fibronectin was detected on presumable collagen fibers and/or fibrin over the exposed smooth muscle layer as well as on fibrin extending between leukocyte aggregation. The spatial microlocalization of integrins was clarified on the leukocytes emigrated in peritonitis, and their ligands were detected on the inflamed peritoneum.

Animals↗

Monitoring positional information during oogenesis in adult Drosophila.

About 184P[lac, ry+]A insertions (O'Kane & Gehring, 1987) have been incorporated into the genome via P element-mediated transformation. The temporal-spatial localization of beta-galactosidase, synthesized by these insertions during oogenesis, is described. 32% present control levels of endogenous beta-galactosidase expression and 68% show novel patterns. 13% of the insertions are germline-specific; 33%, follicle-cell-specific; 20% are expressed in both germ line and follicle cells; and 2%, specific to the germarium. Several lines exhibit strict temporal-spatial localizations of beta-galactosidase; notably those expressed in specific populations of follicle cells. The results are discussed with respect to some of the positional information encoded in the genome to which the insertions respond, the use of the insertions as markers for cell differentiation and the potential of the technique for isolating new genes involved in egg production.

Animals↗

Flow requirements in ventricular fibrillation: An in vivo nuclear magnetic resonance analysis of the left ventricular high-energy phosphate pool.

STUDY OBJECTIVE: We sought to determine whether flow rates of approximately 60% of normal values are sufficient to preserve the left ventricular myocardial high-energy phosphate pool during ventricular fibrillation (VF). METHODS: Mixed-breed swine (weight 22. 4+/-2.5 kg) were anesthetized with alpha-chloralose, placed in a state of VF, and perfused with extracorporeal circulation at a target flow of 50 mL.kg(-1).min(-1). In vivo whole-wall (average of left ventricular wall) and spatially localized phosphorous-31 nuclear magnetic resonance (NMR) spectra were acquired at baseline and during VF. RESULTS: Mean flow during VF was 58+/-20 mL.kg(-1). min(-1) (+/-SD; 95% confidence interval, 44 to 71) or about 60% of baseline cardiac output (n=13). Whole-wall adenosine triphosphate (ATP) decreased during perfused VF (P <.05), whereas creatine phosphate (CP) remained unchanged from baseline. With spatially localized NMR, the ratios of CP/ATP were similar at baseline in all layers (endocardium --> epicardium) of the left ventricular wall. However, during perfused VF, subepicardial CP/ATP ratios increased by 14% to 40% compared with baseline values, whereas subendocardial CP/ATP ratios remained unchanged (1% to 3% increase). An additional 4 animals perfused at 72+/-10 mL.kg(-1).min(-1) (+/-SD; 95% confidence interval, 56 to 92) during VF had preservation of CP and ATP levels. CONCLUSION: Flow levels equivalent to 60% of baseline cardiac output were insufficient to maintain normal high-energy phosphate levels in the in vivo fibrillating myocardium. At this level of flow, myocardial high-energy phosphate loss is nonhomogeneous within the left ventricular wall.

Adenosine Triphosphate↗

Noninvasive measurements of transmural myocardial metabolites using 3-D (31)P NMR spectroscopy.

A completely noninvasive three-dimensional (3-D) static magnetic field magnitude spatially localized (31)P spectroscopy technique has been developed and applied to study the in vivo canine myocardium at 9.4 T. The technique incorporates both Fourier series windows and selective Fourier transform methods utilizing all three orthogonal gradients for 3-D phase encoding. The number of data acquisitions for each phase-encoding step was weighted according to the Fourier coefficients to define cylindrical voxels. Spatially localized (31)P spectra can be generated for voxels of desired location within the field of view as a postprocessing step. The quality of localization was first demonstrated by using a three-compartment phantom. The technique was then applied to in vivo canine models and yielded (31)P cardiac spectra with an excellent signal-to-noise ratio. The in vivo validation experiments, using an implanted 2-phosphoenolpyruvate-containing marker, demonstrated that the technique is capable of measuring at least two transmural layers of left ventricular myocardium representing the subepicardium and subendocardium.

Adenosine Triphosphate↗

Dissociation of object and spatial visual processing pathways in human extrastriate cortex.

The existence and neuroanatomical locations of separate extrastriate visual pathways for object recognition and spatial localization were investigated in healthy young men. Regional cerebral blood flow was measured by positron emission tomography and bolus injections of H2(15)O, while subjects performed face matching, dot-location matching, or sensorimotor control tasks. Both visual matching tasks activated lateral occipital cortex. Face discrimination alone activated a region of occipitotemporal cortex that was anterior and inferior to the occipital area activated by both tasks. The spatial location task alone activated a region of lateral superior parietal cortex. Perisylvian and anterior temporal cortices were not activated by either task. These results demonstrate the existence of three functionally dissociable regions of human visual extrastriate cortex. The ventral and dorsal locations of the regions specialized for object recognition and spatial localization, respectively, suggest some homology between human and nonhuman primate extrastriate cortex, with displacement in human brain, possibly related to the evolution of phylogenetically newer cortical areas.

Adult↗