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PubMed1997

Consciousness and biological evolution.

It has been suggested that if the preservation and development of consciousness in the biological evolution is a result of natural selection, it is plausible that consciousness not only has been influenced by neural processes, but has had a survival value itself; and it could only have had this, if it had also been efficacious. This argument for mind-brain interaction is examined, both as the argument has been developed by William James and Karl Popper and as it has been discussed by C.D. Broad. The problem of identifying mental phenomena with certain neural phenomena is also addressed. The main conclusion of the analysis is that an explanation of the evolution of consciousness in Darwinian terms of natural selection does not rule out that consciousness may have evolved as a mere causally inert effect of the evolution of the nervous system, or that mental phenomena are identical with certain neural phenomena. However, the interactionistic theory still seems, more plausible and more fruitful for other reasons brought up in the discussion.

Biological Evolution↗
PubMed2002

Taenia tapeworms: their biology, evolution and socioeconomic significance.

A biological context for understanding human pathogens and parasites emanates from evolutionary studies among tapeworms of the genus Taenia. Human taeniasis and cysticercosis represent archaic associations and remain significant challenges for socioeconomic development, public health and food safety, and a continuing threat to animal production on a global basis.

Animals↗
PubMed2000

Niche construction, biological evolution, and cultural change.

We propose a conceptual model that maps the causal pathways relating biological evolution to cultural change. It builds on conventional evolutionary theory by placing emphasis on the capacity of organisms to modify sources of natural selection in their environment (niche construction) and by broadening the evolutionary dynamic to incorporate ontogenetic and cultural processes. In this model, phenotypes have a much more active role in evolution than generally conceived. This sheds light on hominid evolution, on the evolution of culture, and on altruism and cooperation. Culture amplifies the capacity of human beings to modify sources of natural selection in their environments to the point where that capacity raises some new questions about the processes of human adaptation.

Adaptation, Physiological↗
PubMedDate not supplied

Relationships between specialized cells, capillaries and intermediary cytofibrillary elements. XVIIth Note. Biological evolution of the respiratory subsystem in Reptilia.

This note continues the XIIth, XVth and XVIth ones concerning the biological evolution of the respiratory subsystem (SS.Rs.) in invertebrates, aquatic vertebrates and amphibians. Author tries to discern some of the factors involved in the passage from Amphibia to Reptilia. The lengthy evolution of embryotrophic mechanisms during this process in the light of the aromorphotic theory (A. N. Sewertsow) and the accelerating form of dyschronism (De Beer) are highlighted. The result of these changes is the formation of a large telolecithal egg endowed with all the embryotrophic reserves needed for the terrestrial evolution, for its acceleration and condensation, through the suppression of the larval stage and of metamorphosis, as well as through the appearance of some new characters. The evolution of the extraembryonic area in Amniota precursors and in Amniota and their homeothermal descendants, both oviparous and viviparous, is also discussed. The succession of respiratory organs is followed up (yolk sac, external branchiae, allantois, placenta) in the light of the organ substitution theory and of the biological stereo-type theory (Mârza, Repciuc, Eskenasy).

Animals↗
PubMed2005

[Treatment interruption in HIV infected patients: clinical and biological evolution].

OBJECTIVE: The authors had for aim to evaluate the clinical and biological evolution in HIV-infected patients with viraemia lower than 30,000 copies/mL having decided to interrupt their treatment. PATIENTS AND METHODS: Patients with highly active antiretroviral therapy (HAART) for more than 3 months followed by treatment interruption longer than 1 month were included in a retrospective analysis. RESULTS: Forty-six patients having stopped treatment between November 1999 and July 2003 were included. The median duration of treatment interruption was 9.5 months. During the study, no clinical event occurred for 21 patients, and at least 1 clinical event occurred for the 25 others. The median CD4(+) cell counts (CD4) before and at the end of treatment interruption were 597/mm(3) and 437/mm(3), respectively (P<0.001). The median values of viral load before and at the end of treatment interruption were <50 and 23749 copies/mL, respectively (P<0.001). Among the 26 patients having started a new HAART, pre-treatment interruption and post-new HAART median CD4 (with a median delay after HAART of 9.7 months) were 548 and 432.5/mm(3) (P=0.02). Pre-treatment interruption and post-new HAART median viral load were 131.5 and 94.5 copies/mL (NS). CONCLUSIONS: Treatment interruption must be used with caution in spite of the absence of virological impact, because CD4 cell count after new HAART is lower than CD4 preceding treatment interruption. Treatment interruption is contraindicated for patients with AIDS. Physicians must carefully follow other patients who decide on a treatment interruption.

Adult↗
PubMed1999

Inferring the historical patterns of biological evolution.

Phylogenetic trees describe the pattern of descent amongst a group of species. With the rapid accumulation of DNA sequence data, more and more phylogenies are being constructed based upon sequence comparisons. The combination of these phylogenies with powerful new statistical approaches for the analysis of biological evolution is challenging widely held beliefs about the history and evolution of life on Earth.

Animals↗
PubMed2000

Random networks created by biological evolution.

We investigate a model of an evolving random network, introduced by us previously [Phys. Rev. Lett. 83, 5587 (1999)]. The model is a generalization of the Bak-Sneppen model of biological evolution, with the modification that the underlying network can evolve by adding and removing sites. The behavior and the averaged properties of the network depend on the parameter p, the probability to establish a link to the newly introduced site. For p=1 the system is self-organized critical, with two distinct power-law regimes with forward-avalanche exponents tau=1.98+/-0.04 and tau(')=1.65+/-0.05. The average size of the network diverges as a powerlaw when p-->1. We study various geometrical properties of the network: the probability distribution of sizes and connectivities, size and number of disconnected clusters, and the dependence of the mean distance between two sites on the cluster size. The connection with models of growing networks with a preferential attachment is discussed.

Biological Evolution↗
PubMed2004

Solvable biological evolution models with general fitness functions and multiple mutations in parallel mutation-selection scheme.

In a recent paper [Phys. Rev. E 69, 046121 (2004)]], we used the Suzuki-Trottere formalism to study a quasispecies biological evolution model in a parallel mutation-selection scheme with a single-peak fitness function and a point mutation. In the present paper, we extend such a study to evolution models with more general fitness functions or multiple mutations in the parallel mutation-selection scheme. We give some analytical equations to define the error thresholds for some general cases of mean-field-like or symmetric mutation schemes and fitness functions. We derive some equations for the dynamics in the case of a point mutation and polynomial fitness functions. We derive exact dynamics for two-point mutations, asymmetric mutations, and the four-value spin model with a single-peak fitness function. The same method is applied for the model with a royal road fitness function. We derive the steady-state distribution for the single-peak fitness function.

Biological Evolution↗
PubMed1999

Model of biological evolution with threshold dynamics and infinitely many absorbing states.

We study a model of biological evolution where the survival of a given species depends on its interactions with neighboring species. In the steady state the model has an active phase and an absorbing phase, which are separated by the critical point of the directed percolation universality class. The absorbing phase is infinitely degenerate and the dynamical behavior of our model is found to be nonuniversal.

Journal Article↗
PubMed2002

The classification of various organisms according to the free amino acid composition change as the result of biological evolution.

The free amino acid compositions in archaeobacteria, eubacteria, protozoa, blue-green alga, green alga, slime mold, plants and mammalian cells were analyzed, to investigate whether changes in their free amino acid compositions reflect biological evolution. Cell homogenates were treated with 80-90% ethanol to separate cellular proteins and free amino acids contained in the cells. Different patterns of the free amino acid compositions were observed in the various organisms. Characteristic differences were observed between plant and mammalian cells, and between archaeobacteria and eubacteria. The patterns of the free amino acid composition in blue-green alga, green alga, protozoa and slime mold differed from each other and from those of eubacteria and archaeobacteria. Rat hepatoma cells (R-Y121B) were cultured in Eagle's minimum essential medium (MEM) containing 5% serum or in a modified MEM lacking arginine, tyrosine and glutamine. No significant difference in the free amino acid composition was observed between the two cell groups cultured under two different conditions. It is suggested that the free amino acid composition reflects apparent biological changes as the result of evolution.

Amino Acids↗
PubMed2002

Clinical and biological evolution of HIV-1 seroconverters in Abidjan, Côte d'Ivoire, 1997-2000.

OBJECTIVE: To describe the clinical and biologic evolution of HIV-1 infection in Africa. METHODS: One hundred four HIV-1-infected individuals were identified prospectively from regular blood donors in Abidjan, Côte d'Ivoire. The date of seroconversion was estimated from results of sequential serologic tests. Biologic and clinical follow-up was performed every 6 months, starting as early as possible after seroconversion. Case management followed national guidelines. RESULTS: The median interval between estimated seroconversion and study inclusion was 9.7 months, and the median window of seroconversion was 2.8 months. At baseline, all but two patients were asymptomatic; the median CD4 + cell count was 527/mm 3 (interquartile range [IR], 395-684), and the median plasma HIV RNA level was 4.6 log 10 copies/ml (IR, 3.8-4.9). The median follow-up was 23.9 months, and 95% of the patients received primary prophylaxis with co-trimoxazole for opportunistic infections. Of the patients, 1 presented with wasting syndrome, 3 developed tuberculosis, and 17 had a Centers for Disease Control and Prevention category B-defining event. The 3-year AIDS-free and symptom-free probabilities were 96.7% (95% confidence interval [CI], 87.0-99.2] and 79.3% (95% CI, 67.5-87.2), respectively. During the first 3 years of follow-up, we observed that the median plasma viral load stabilized at >4 log 10 copies/ml and that the median CD4 + cell count declined by 20 to 25/mm 3 per year. CONCLUSION: These African seroconverters were moderately immunosuppressed. The median HIV RNA level was high and varied very little during the first 3 years, and there were few clinical events.

Adult↗
PubMedDate not supplied

A theory of pragmatic information and its application to the quasi-species model of biological evolution.

'Standard' information theory says nothing about the semantic content of information. Nevertheless, applications such as evolutionary theory demand consideration of precisely this aspect of information, a need that has motivated a largely unsuccessful search for a suitable measure of an 'amount of meaning'. This paper represents an attempt to move beyond this impasse, based on the observation that the meaning of a message can only be understood relative to its receiver. Positing that the semantic value of information is its usefulness in making an informed decision, we define pragmatic information as the information gain in the probability distributions of the receiver's actions, both before and after receipt of a message in some pre-defined ensemble. We then prove rigorously that our definition is the only one that satisfies obvious desiderata, such as the additivity of information from logically independent messages. This definition, when applied to the information 'learned' by the time evolution of a process, defies the intuitions of the few previous researchers thinking along these lines by being monotonic in the uncertainty that remains after receipt of the message, but non-monotonic in the Shannon entropy of the input ensemble. It also follows that the pragmatic information of the genetic 'messages' in an evolving population is a global Lyapunov function for Eigen's quasi-species model of biological evolution. A concluding section argues that a theory such as ours must explicitly acknowledge purposeful action, or 'agency', in such diverse fields as evolutionary theory and finance.

Biological Evolution↗