The state and function of copper in biological systems.
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The structure of cytochrome c552 (Cyt-c552) from Thermus thermophilus shows many differences to other c-type cytochromes. The rich lysine domain close to the heme does not exist in this cytochrome, allowing us to postulate that the interaction with its redox partner must be different to the cytochrome c/cytochrome c oxidase interaction. We report a study of Cyt-c552 adsorbed on self-assembled monolayers (SAMs) of functionalized alkanethiols used to mimic the chemical properties of its redox partner (ba3-oxydase). Hydrophilic (-COOH), polar (-OH), hydrophobic (-CH3), and mixed (-OH/-CH3) SAMs grafted on roughened silver electrodes were characterized by X-ray photoelectron spectroscopy. Surface enhanced resonance Raman spectroscopy (SERRS) was employed to determine the structure and the redox properties (E degrees and number of transferred electron) of the heme of Cyt-c552 adsorbed on roughened silver electrodes coated by the different SAMs. The surface that most closely models the environment of the ba3-oxidase is a mixed SAM formed by 50% polar [Ag-(CH2)5-CH2OH] and 50% hydrophobic [Ag-(CH2)5-CH3] alkanethiols. Only the native form B1(6cLS) of Cyt-c552 is detected by SERRS when the protein is adsorbed on such a surface that promotes a protein orientation favorable for the electron transfer (number of transferred electron = 1). We shall discuss the differences and similarities of the electron-transfer mechanism of Cyt-c552 compared to cyt-c.
Biochemical reactions involving electron transfer between substrates or enzyme cofactors are both common and physiologically important; they have been studied by means of a variety of techniques. In this paper we review the application of photochemical methods to the study of intramolecular electron transfer in hemoproteins, thus selecting a small, well-defined sector of this otherwise enormous field. Photoexcitation of the heme populates short-lived excited states which decay by thermal conversion and do not usually transfer electrons, even when a suitable electron acceptor is readily available, e.g., in the form of a second oxidized heme group in the same protein; because of this, the experimental setup demands some manipulation of the hemoprotein. In this paper we review three approaches that have been studied in detail: (i) the covalent conjugation to the protein moiety of an organic ruthenium complex, which serves as the photoexcitable electron donor (in this case the heme acts as the electron acceptor); (ii) the replacement of the heme group with a phosphorescent metal-substituted porphyrin, which on photoexcitation populates long-lived excited states, capable of acting as electron donors (clearly the protein must contain some other cofactor acting as the electron acceptor, most often a second heme group in the oxidized state); (iii) the combination of the reduced heme with CO (the photochemical breakdown of the iron-CO bond yields transiently the ground-state reduced heme which is able to transfer one electron (or a fraction of it) to an oxidized electron acceptor in the protein; this method uses a "mixed-valence hybrid" state of the redox active hemoprotein and has the great advantage of populating on photoexcitation an electron donor at physiological redox potential).
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It is a pleasure to contribute to the special issue published in honor of Vladimir Skulachev, a distinguished scientist who greatly contributes to maintain a high standard of biochemical research in Russia. A more particular reason can be found in his work, where observations anticipating some ideas presented in my article were reported. Cytochrome c oxidase exhibits protonmotive, redox linked allosteric cooperativity. Experimental observations on soluble bovine cytochrome c oxidase are presented showing that oxido-reduction of heme a/Cu(A) and heme a(3)/Cu(B) is linked to deprotonation/protonation of two clusters of protolytic groups, A(1) and A(2), respectively. This cooperative linkage (redox Bohr effect) results in the translocation of 1 H(+)/oxidase molecule upon oxido-reduction of heme a/Cu(A) and heme a(3)/Cu(B), respectively. Results on liposome-reconstituted oxidase show that upon oxidation of heme a/Cu(A) and heme a(3)/Cu(B) protons from A(1) and A(2) are released in the outer aqueous phase. A(1) but not A(2) appears to take up protons from the inner aqueous space upon reduction of the respective redox center. A cooperative model is presented in which the A(1) and A(2) clusters, operating in close sequence, constitute together the gate of the proton pump in cytochrome c oxidase.
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Free energy changes for ATP synthesis (delta GP) and 2e(-)-transfer across Site 3 (delta GR) were determined during oxidative phosphorylation by rat liver mitochondria. At static head, -delta GR/delta GP ranged narrowly between 1.55 and 1.59 with five different respiratory substrates. Thus, an ATP/2e- of 1 1/2 at Site 3 is thermodynamically possible with regards to overall reactants and products. Using nonequilibrium thermodynamics, phenomenological stoichiometries were close to 1 1/2 for all substrates suggesting that ATP/2e- at Site 3 is, in fact, 1 1/2. An ATP/2e- of 1 1/2 can only be possible if H+/O is 4 for cytochrome oxidase.
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The principles for the operation of redox-linked proton pumps are reviewed and applied to one specific pump, cytochrome oxidase. Systematic studies of internal electron transfer in the different redox states of this pump will be facilitated by the development of methods for rapid electron injection into the metal centers of the enzyme. Two methods that have been employed to generate electron donors are pulse radiolysis and laser flash photolysis. The rate of electron injection from photoexcited Ru-modified cytochrome c or triplet Zn-cytochrome c into the CuA center is about 10(5) s-1, and the CuA/cytochrome a electron equilibration rate is 2 x 10(4) s-1. Electron transfer from cytochrome a to the cytochrome a3-CuB site occurs at 2 x 10(5) s-1 in the half-reduced enzyme, whereas the rate is only 2 x 10(2) s-1 in the peroxide intermediate, despite a much higher driving force. It is likely that variations in distant electronic coupling attributable to a ligand shuttle, as well as changes in the reorganization energy of one or more of the redox centers, contribute to the control of internal electron flow in the enzyme.