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Some population genetic models combining artificial and natural selection pressures in the presence of assortative mating.

We have attempted quantitatively through a series of assortative mating models to gain insight into the interaction between the usually antagonistic tendencies of artifical and natural selection pressures. We summarize some of the robust conclusions. In cases where natural selection is expressed only through the phenotype and acts in the opposite direction to the culling incline, then fixation of the dominant or recessive type can be achieved and which occurs depends critically on the initial composition of the population and the magnitude of the degree of culling compared to the selection coefficients. With traits determined at two loci in the case that the double heterozygote is the desired kind, the effect of selfing can only be overcome by very strong artificial selection pressures (high culling order). The degree of culling to achieve its objective can be relaxed with weakening of linkage. The relevant comparison is r2+(1-r)2less than 2(1-c) indicating the precise extent of culling needed, to prevent fixation. The relationships are more complex when natural selection forces are also involved (see Model IV).

Alleles

Selection for canalization at extra dorsocentral and scutellar bristles in Drosophila melanogaster.

Direct artificial selection for a specific pattern, in the number and position of extra bristles, was carried out in a wild-type population of Drosophila melanogaster to canalize (estimated by probit width) the selected phenotypes. From the same population, independent lines were selected for extra dorsocentral bristles (lines D3 and D4) and for extra scutellar bristles (lines E2, E3, and E4). Differences at canalization between both dorsocentral and scutellar systems were detected. Results fit an independent control hypothesis for canalization, at two symmetrical extra bristles, in the main regions in which extra bristles appear.

Animals

Can polymorphism be maintained by selection favouring an intermediate optimum phenotype?

Populations of Drosophila melanogaster containing the special chromosome, M-5, were subjected to artificial selection to canalise scutellar bristle phenotype at four bristles. At the end of the experiment allele frequencies at three enzyme loci were measured. In the selected population, these frequencies were found to have diverged from their starting values less than would have been predicted on the basis of random genetic drift. This was not found in control populations or in populations selected for low bristle number.

Alleles

Open-field behavior in mice: A diallel analysis of selected lines.

The open-field behavior of 719 mice resulting from a diallel cross among the six lines of the DeFries selection experiment was assessed. Results of several analyses employing different models and procedures in open-field activity and defecation among these lines have predominantly additive effects. Estimates of heritability obtained from these analyses were considerably higher than previous estimates based on familial resemblance or the realized response to selection; thus estimation of heritability from diallel analyses is clearly unwarranted when selected lines are employed and the character of interest has been either directly or indirectly subjected to artificial selection.

Alleles

Determination of the environmental sensitivity of selection lines by the selection environment.

The parents chosen to continue 10 independent selection lines of Schizophyllum commune over eight successive generations of selection, along with unselected controls, have been retrospectively examined for their response to growth at 15 degrees, 20 degrees, 25 degrees, 30 degrees and 35 degrees C. The regression of rate of growth on temperature was essentially linear over the range 15 degrees to 30 degrees C for all lines in all generations as was also the regression of rate of growth on various biological assessments of the environments over the whole temperature range. Either regression, therefore, provided linear regression coefficients which adequately accounted for the relative sensitivities of the lines to temperature in each generation of selection. These measures of environmental sensitivity confirmed our earlier report that selection for high mean performance in a good environment or for low mean performance in a poor environment leads to selections that are more sensitive to environmental variation than selections for high mean performance in a poor environment or for low mean performance in a good environment. These differences in sensitivity emerge as correlated responses during selection and the magnitude of these correlated responses is higher in the good environment than in the poor environment irrespective of the direction of selection. The environmental sensitivity of selection lines can be modified in either direction as required by either selecting for sensitivity simultaneously with the selection for mean performance or by selecting for mean performance in an above or below average environment. The quality of environments in which artificial selection is usually carried out is likely to have led to high selections with maximum environmental sensitivity and low selections with minimum sensitivity.

Environment

Correlated characters in selection for aggressiveness in female mice. II. Maternal aggressiveness.

The present study investigated whether maternal aggression has shown a correlated response in a program of artificial selection for isolation-induced interfemale aggression in housemice. Females from the first replicate of lines (H1, C1, L1) and the second replicate of lines (H2, C2, L2) from generation S5 were given daily aggression tests for 20 consecutive days following the birth of their first litter. Evidence of a correlated response was found for replicate 2, but results for replicate 1 provided no evidence of a correlated response. In generation S10, when better separation of the lines on isolation-induced aggression had occurred, the study was repeated. In S10 there was clear evidence of a correlated response in both of the replicates.

Aggression

Genome Wide Analysis Reveals Divergence and Ancestral Origins of Min Pigs.

The Min pig, a representative northern Chinese indigenous breed, carries a unique ancestral background shaped by the historical phylogeography of Northeast Asia. This study aimed to dissect the population structure, temporal genetic divergence, and ancestral composition of Min pigs, trace their evolutionary origin, and identify trait-linked functional genes, providing information regarding their evolutionary history and conservation. We analyzed 61 Min pigs sampled across nearly 20 years and 701 reference pigs comprising other Chinese indigenous breeds, Western commercial lines, and Chinese wild boars, using PCA, NJ phylogenetic analysis, Admixture, TreeMix, D-statistic, f4-ratio, and combined selection signature scans (sliding-window FST, XP-EHH, and π-ratio). Clear genetic stratification was observed among Min pig subpopulations, reflecting long-term divergence under natural and artificial selection. PCA and Admixture (K = 2-4) separated East Asian indigenous and Western ancestral components, verifying an admixed Northeast Asian origin with a dominant ancient East Asian component and a Western component. Compared with early-2000s Min pigs, contemporary individuals are genetically closer to Western breeds and exhibit a more scattered structure due to shifted ancestral component proportions, further confirmed by D-statistic and f4-ratio values. We identified 321 differentiated SNP loci based on the Animal QTL database, corresponding to core candidate genes (AKT3, ACACA, MAP3K5, FGFR4, C3, and SERPINC1) enriched for meat quality, growth, reproduction, immunity, energy metabolism, and MAPK/PI3K-Akt/AMPK pathways. This study reveals Min pigs' admixed origin and temporal divergence, clarifying their Northeast Asian evolution and providing molecular markers for genetic monitoring and conservation.

Animals

Some models of genetic selection.

This paper begins with a description of the classical theory of viability selection in which probabilities that individuals of various genotypes survive are in proportions that do not change with time and are independent of population structure. Salient features of viability selection with one and two loci are reviewed. This theory is intimately connected with the usual theory of mass selection in quantitative genetics. It is well known that the mean of the relative viabilities does not necessarily increase if there is viability selection at more than one locus. It also turns out that if there is selection for fecundity with one locus, the mean fecundity may steadily decrease or oscillate rather than increase. This and the fact that a Hardy-Weinberg structure may no longer exist at any stage of life may have a bearing on predicting progress from artificial selection on reproductive characters. Classical viability selection theory does not completely describe natural selection. Other possibilities are discussed. Among these is the density and frequency dependent selection induced when the population lives in a limited habitat. Implications in quantitative genetics are discussed.

Alleles

Genetic diversity, population structure in a historical panel of Brazilian soybean cultivars.

Soybean [Glycine max (L.) Merrill] is one of the most widely grown legumes in the world, with Brazil being its largest producer and exporter. Breeding programs in Brazil have resulted from multiple cycles of selection and recombination starting from a small number of USA cultivar ancestors in the 1950s and 1960s years. This process has led to the successful adaptation of this crop to tropical conditions, a phenomenon known as tropicalization. Many studies describe a narrow genetic background in Brazilian soybean cultivars. Various factors can affect the genetic diversity in species, especially in cultivated crops, such as the reproduction type, artificial selection, and the number and sources of variability in the breeding programs. In turns, the genetic diversity can affect the linkage disequilibrium blocks (LD) patterns and, consequently, molecular breeding strategies for selection of target loci for agronomic traits. We used high-throughput genotyping with SoySNP50K Illumina SNP markers to assess a collection of 370 Brazilian soybean accessions covering more than 60 years of soybean breeding in Brazil. Our goal was to investigate population structure and genetic diversity in the Brazilian germplasm, detect patterns of LD blocks, and identify regions presenting signals of selective swaps linked with quantitative trait loci (QTLs) of agronomic interest. Population structure analysis revealed two major groups among all genotypes, primarily differentiated by the year of release, separating old and new cultivars (before and after 2000´s years), and by growth habit (stem termination type-SST). The group I comprises about 75% of the panel and includes cultivars release before 2000`s years, including the oldest cultivars released in Brazil, most of which exhibit a determinate growth habit and maturity groups VI and VII. Group II includes only 83 materials, but shows higher levels of diversity than group I, representing most recent introductions in Brazilian germplasm. Further analysis of substructure within Group I, identified seven subgroups with no clear trend for segregation based on maturity group, STT or year of release. Instead, these subgroups were based on the contribution of key donors of disease resistance and adaptability, as soybean cultivation expanded from the South to Central region of Brazil. This finding is consistent with the history of soybean expansion in Brazil. We identified 123 genomic regions under selection among the groups of Brazilian cultivars associated with 440 quantitative trait loci (QTLs), revealing regions fixed across the breeding process associated with yield, disease resistance, water efficiency use, and others.

Glycine max

Lactation: some cardiovascular and metabolic consequences, and the mechanisms of lactose and ion secretion into milk.

Lactation causes increases in mammary blood flow, gastrointestinal blood flow and cardiac output in the rat, and the suckling-induced release of lactogenic anterior pituitary hormones probably causes these changes, directly or indirectly. Metabolic requirements of lactation in women are similar to those in other animals not artificially selected for a high milk yield but the physiological control of the relationship between milk secretion and nutrient availability is not well understood. The unusual composition of the aqueous phase of human milk (rich in lactose but poor in sodium and potassium ions) can be explained by the same basic mechanisms for secretion of lactose and ions as operate in other animals but with quantitative differences.

Animals

Quantitative electron microscopic analysis of the epithelium of normal human alveolar mucosa.

The epithelium of normal human alveolar mucosa originating from the anterior vestibulum was subjected to stereologic analysis. Eight biopsies were collected half-way between the muco gingival junction and the vestibular fornix from 20 to 50 year-old females, and processed for light and electron microscopy. At two levels of magnification, electron micrographs were sampled from four artificially selected strata in regions of epithelial ridges. Stereologic point counting based on a computer-aided system for analyzing stratified epithelia served for examining a total of about 860 electron micrographs. The alveolar epithelium was 0.26 mm thick, occasionally interdigitated by short, slender connective tissue papillae, and consisted of (1) a narrow basal and suprabasal, and (2) a broad spinous and surface compartment. It displayed a differentiation pattern which, in most subjects studied, was similar to that of normal human buccal epithelium, however, on the average, produced less mature surface cells. This pattern was expressed mainly by a density increase of cytoplasmic filaments (98 A in diameter), a concomitant decrease of the cytoplasmic ground substance, the formation of dark-cored membrane coating granules, and invividually variable amounts of glycogen deposition. In some subjects, a mixed differentiation pattern was found. The structural organization of alveolar epithelium, in analogy to cheek epithelium, was compatible with the function of distensibility.

Adult

A genetic analysis of phototactic behavior in Drosophila melanogaster. II. Hybridization of divergent populations.

Artificial selection has produced populations of Drosophila melanogaster which show either positive or negative phototactic behavior. Selection was carried out in the presence of various marked multiple inversions used to suppress genetic recombination. Reciprocal hybridizations between photopositive and photonegative populations of flies have revealed the X chromosome of D. melanogaster to be important in phototactic behavior regardless of conditions which restricted genetic recombination during selection.

Animals

Sources of behavioral deviation modeled by early color preferences in quail. II. Diathetic genes and the leftover variance "V(e)".

The sources of deviation from population-typical norms of variability were studied in relation to early approach preferences between colors in newly hatched Japanese quail chicks (Coturnix coturnix japonica). Subjects were drawn from an unselected genetic control line, two genetic lines that were artificially selected for extreme blue and red preferences, their hybrids, and a large set of backcross and assortatively derived generations. Large progressive increases were observed with selection in the leftover (V(e)) component of F1 variance and consistent additional variance increases in F2 hybrids. Backcross generations exhibited greater than expected expression of the blue and red preference genes. Discussion differentiates between diathetic and normative influences in preference deviations and relates the increased Ve to relaxed normative canalization of preference development by directional selection.

Animals

Seed shattering habit in millets and the secrets of the abscission layer - a comprehensive review.

Though seed shattering continues to be a significant barrier affecting yield stability and harvesting efficiency in millets and other grasses, millets are increasingly acknowledged as climate-resilient, nutrient-rich 2007cereal crops with the potential to strengthen global nutritional and food security under the combined pressures of climate change, population growth, and limited natural resources. Since strong artificial selection favoured non-shattering phenotypes during domestication, seed shattering, an adaptive trait in wild species that promotes seed dispersal through the formation and activation of specialised abscission layers, became a distinguishing feature of cultivated cereals. With a focus on the morphological, physiological, hormonal, and genetic modulation of the abscission zone, this article summarizes the state of the art regarding seed shattering in millets. Abscission layer morphology, location, and lignification vary greatly among grasses, from well-defined lignified zones in rice and sorghum to non-lignified and anatomically subtle zones in Setaria and Panicum species. Cell wall-modifying enzymes like polygalacturonases, cellulases, expansins, and pectin methylesterases that mediate middle lamella degradation are modulated by coordinated hormonal signalling involving auxin, ethylene, and abscisic acid, which controls the timing and progression of cell separation at the physiological level. Domestication-related genes, including SH1, qSH1, SH4, and LES1, demonstrate convergent evolutionary mechanisms controlling abscission layer development in a variety of grass lineages at the molecular level. Understanding these regulatory networks has been greatly enhanced by recent developments in transcriptomics, functional genomics, and genome sequencing in both model species and underused millets. The role of millets as climate-smart cereals for sustainable future agriculture is reinforced by the integration of anatomical, physiological, and genetic insights, which offer a solid basis for targeted breeding and genome-editing strategies intended to improve seed retention, enhance yield stability, and increase harvest efficiency.

Abscission Layer

A biometrical analysis of a mating characteristic in Drosophilia.

A model is described for the biometrical analysis of interaction behavioural characteristics. The model is illustrated by analysis of the mating speed of Drosophila pseudoobscura derived from crosses of fast and of slow mating strains generated through artificial selection.

Animals

A new model for measuring breeding genetic distance. II. Polygenic traits.

The breeding genetic distance measure of a single locus (Carlson & Welch, 1977) is extended to polygenic traits. For two populations with means -x and approximately x, theta(-x, approximately x) is defined as the size of the largest subpopulation with mean approximately x which can be (artificially) selected from a population with mean -x. The distance is defined as 1--theta(-x, approximately x). It is shown that theta(-x, approximately x) can be calculated from truncation selection and formulas (two loci) and tables (three and four loci) are given. Values for theta(-x, approximately x) based on a normal approximation are seen to be adequate for most cases. The measure is applied to a data example (human skin colour) and to a discussion of the idea of 'genetic inertia'.

Gene Frequency

Influence of altitude and age on pulmonary arterial pressure in cattle.

Pulmonary arterial pressures in native cattle ranging in age from 3 months to 10 yr were found to be increased with increasing altitudes of residence from sea level to 3048 m. At altitudes of 2590 and 3048 m, but not at sea level or 1524 m, the pressures were higher in older than in younger cattle. The magnitude of the pulmonary arterial pressure, and probably the rate of progression of pulmonary hypertension at high altitude, were much less in native cattle than in cattle that were newcomers from low altitude. Natural and artificial selection are believed to have minimized the level of pulmonary hypertension in native high altitude cattle, thus protecting them from high mountain or brisket disease.

Age Factors

Initial observations on the effect of corticosterone and inbred antibody competency in chickens on population development of the northern fowl mite.

Roosters from a line artificially selected for high initial antibody response to sheep red blood cells were more resistant to development of populations of Ornitbonyssus sylviarum (Canestrini and Fanzago) than were birds selected for low antibody response. Oral administration of corticosterone to test chickens at doses ranging from 10 to 40 ppm did not affect mite development. The steroid regimen was shown to reduce lymphocyte and testes mass as well as total weight gain. Postmortem measurements were not different for the 2 inbred lines. Analysis of data indicated that antibody competency alone probably was not responsbile for the observed differences in mite populations.

Animals