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We report draft genome sequences of Lactiplantibacillus plantarum LP48, Enterococcus durans ED01, and Bacillus subtilis BS01 isolated from artisanal goat cheese. Strains were identified by PCR, Sanger sequencing, and Illumina whole-genome sequencing. Assemblies revealed strain-specific features.
We report the draft genome sequences of three Mycobacterium tuberculosis isolates recovered from Panamanian residents belonging to the Indo-Oceanic (Lineage 1) and West African (Lineage 5) lineages. These isolates exhibit various drug-resistance profiles, including rifampicin-resistant and multidrug-resistant phenotypes. This highlights the changing molecular epidemiology of tuberculosis in Central America.
This study reports the assembled and annotated draft genomes of three Bacillus spp. isolates from the University of the Philippines Culture Collection. Genome analysis predicted genes for stress tolerance, plant-growth promotion, and secondary metabolite production, highlighting their potential for diverse biotechnological applications in agriculture and natural product synthesis.
We describe the draft genomes of 188 Salmonella isolates from no-antibiotics-ever and conventionally raised chicken and turkey products. Top three isolated serotypes were S. Infantis, S. Kentucky, and S. Typhimurium. The genome sizes, contig numbers, and GC contents of 188 isolates range from 4.68 to 5.15 Mb, 31 to 168, and 51.6% to 52.2%, respectively.
We report a draft genome assembly of Polystigma amygdalinum, the causal agent of almond red leaf blotch. DNA extracted from infected leaves was sequenced using PacBio HiFi, and host-derived reads were removed bioinformatically. The 238.7-Mb assembly (90.8% BUSCO completeness) is highly repetitive (82.3%) and unusually large for an ascomycete.
We present the draft genome sequence of an Escherichia coli strain MTRBAS03, identified in a feed trough sample from a local dairy farm in Mymensingh City, Bangladesh. The genome spans 4,626,877 base pairs, 52 predicted antimicrobial resistance genes, 57 virulence genes, and a pathogenicity score of 0.977.
We describe the draft genomic sequences of 36 isolates of Campylobacter spp. from no-antibiotics-ever and conventionally raised broiler products, comprising 27 Campylobacter jejuni isolates and 9 Campylobacter coli isolates. The genomic features described in this report may facilitate our ability to develop strategies to control and eliminate Campylobacter during poultry production and processing.
Taiozyma onychis (syn. Wickerhamomyces onychis) is a rare opportunistic human fungal pathogen. Here, we report the draft genome sequence of T. onychis NCYC 4433, a fecal isolate from a 62-year-old female.
We report the draft genome sequence of SR50, the first cultivated member of the genus JdFR-22 within the Archaeoglobaceae family, which currently includes three genera with cultivated representatives. Isolated from a shallow hydrothermal vent off Saint-Paul Island, a strictly protected area, SR50 is able to grow lithoautotrophically by sulfate reduction.
Vibrio parahaemolyticus GISV1-1 was isolated from diseased shrimp with acute hepatopancreatic necrosis disease in Bangladesh. Its draft genome is 5,078,728 bp with 45% GC content. The genome exhibits several virulence-associated genes and the beta-lactam resistance gene blaCARB-33. It will enhance our understanding of pathogenesis and disease management in shrimp aquaculture.
Johnsongrass [Sorghum halepense (L.) Pers.] is an allopolyploid, rhizomatous, perennial grass species and one of the most troublesome weeds in global agriculture. We assembled the first Johnsongrass genome to clarify poorly understood genetic factors influencing variable rates of crop-wild hybridization with cultivated sorghum [S. bicolor (L.) Moench]. The draft genome assembly has a total size of 3.26 Gb and BUSCO completeness of 95.3%. We also report the first evolutionary analysis of INHIBITION OF ALIEN POLLEN (IAP), the only known cross-(in)compatibility locus in the genus. Our results reveal an evolutionary history of genome instability, including the loss of distinct parental subgenomes, and suggest that Nebraska accession 'J-37,' the genome donor, is a segmental allotetraploid that may function as a diploid or aneuploid during meiosis. Genome instability could explain observations of variable ploidies in Johnsongrass and facilitate ongoing hybridization with sorghum where gamete ploidies and IAP alleles match. Given this information, we provide a suggested research framework for studying evolution and gene expression in the Sorghum genus where crop-wild hybridization occurs and for predicting the potential for hybridization between specific crossing partners. Collectively, this work will bolster efforts to study and manage reproductive biology in other crop-wild polyploid complexes.
Brevibacillus borstelensis strain BB2 was isolated from a soil sample collected in the Cochamó Valley, Chile. The draft genome comprises 187 contigs totaling 5.25 Mb with a guanine-cytosine (GC) content of 51.7%. Sequencing on an MGI DNBSeq-G400 platform generated 3,406,660 paired-end reads, providing approximately 170× coverage for genomic resource reporting.
Cellvibrio sp. strain 25HG11W-0 is a freshwater agarolytic bacterium isolated from the Namyangcheon stream in the Republic of Korea. Here, we report the draft genome sequence of this bacterium, which harbors multiple putative agarase genes belonging to glycoside hydrolase (GH) families GH16, GH50, GH86, and GH117.
Legionella pneumophila is a well-recognized public health concern and can be sporadically detected in treated drinking water. The draft genomes of 20 Legionella pneumophila isolates are presented, which were recovered from 5 chlorinated and 2 chloraminated drinking water distribution systems.
Plastic degradation by microorganisms offers a natural mechanism for the breakdown of persistent pollutants. Here, we report the draft genome sequence of Fusarium solani strain BAT10, isolated from a waste gas-treating biofilter and capable of degrading aliphatic polyurethane foams as the only source of carbon, nitrogen, and energy.
An anaerobic, thermophilic hydrogenogenic carbon monoxide (CO)-oxidizing Bacillota bacterium, 3446A, was isolated from freshwater pond sediments in Kyoto, Japan. The 3.11-Mbp draft genome sequence (guanine-cytosine content, 50.4%) encodes CODH-ECH genes, consistent with hydrogenogenic CO oxidation. Phylogenomic analysis suggests that Bacillota bacterium 3446A represents a novel genus-level lineage within the family Thermicanaceae.
Pantoea sp. strain S-LA4 is an endophytic bacterium isolated from the leaf tissue of the medicinal plant Leucas aspera. The 4.93-Mbp draft genome of S-LA4 is predictive to encode several enzymes and secondary metabolites of plant growth promotion and bio-pesticidal activity, underscoring its potential for sustainable disease management in agriculture.
Bacillus thuringiensis GIFSPR-111, isolated from shrimp farm soil in Shamnagar, Bangladesh, inhibits Vibrio parahaemolyticus, the causative agent of acute hepatopancreatic necrosis disease in shrimp and exhibits probiotic potential. The 5,608,442 bp draft genome contains multiple biosynthetic gene clusters, with potential to synthesize diverse bioactive metabolites.