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Experimental evolution of Pseudomonas fluorescens in simple and complex environments.

In complex environments that contain several substitutable resources, lineages may become specialized to consume only one or a few of them. Here we investigate the importance of environmental complexity in determining the evolution of niche width over approximately 900 generations in a chemically defined experimental system. We propagated 120 replicate lines of the bacterium Pseudomonas fluorescens in environments of different complexity by using between one and eight carbon substrates in each environment. Genotypes from populations selected in complex environments evolved greater mean and variance in fitness than those from populations selected in simple environments. Thus, lineages were able to adapt to several substrates simultaneously without any appreciable loss of function with respect to other substrates present in the media. There was greater genetic and genotype-by-environment interaction variance for fitness within populations selected in complex environments. It is likely that genetic variance in populations grown on complex media was maintained because the identity of the fittest genotype varied among carbon substrates. Our results suggest that evolution in complex environments will result neither in narrow specialists nor in complete generalists but instead in overlapping imperfect generalists, each of which has become adapted to a certain range of substrates but not to all.

Bacterial Typing Techniques↗

Dilution/extinction of community phenotypic characters to estimate relative structural diversity in mixed communities.

Recent interest in microbial diversity has led to increased emphasis on the development of appropriate techniques. Structural diversity encompasses the number and distribution of separate or interacting biological entities responsible for a given function within the overall set of functions of a community. This study evaluated an approach for estimating the relative degree of structural diversity in heterotrophic microbial communities by dilution to extinction of community phenotypic traits. Serial dilutions of environmental samples (rhizosphere, stream) were tested for community phenotypic traits (i.e. carbon source respiration). The non-linear relationship between the number of positive responses (i.e. functional richness or R) and inoculum density in each sample dilution (I) fit the simple rectangular hyperbola model, allowing estimation of the maximal richness (R(max)) and the inoculum density at half-maximal richness (K(I)). The later term appears to be useful in assessing relative structural diversity as evidenced by significantly higher values for communities with higher predicted species diversity. The examination of community functional characteristics across a series of dilutions, particularly in conjunction with other techniques, may be a useful approach for the study of microbial diversity and related ecological parameters such as niche width and metabolic redundancy.

Journal Article↗

Geographical clinal variation at seven esterase-coding loci in Indian populations of Zaprionus indianus.

Twelve Indian natural populations of Zaprionus indianus, collected along 22 degrees latitudinal range, were analysed electrophoretically for allozymic variation of esterase gene-enzyme system. Interestingly, all the seven Est loci were found to be highly polymorphic in all the populations of Z. indianus. The genetic structure of Z. indianus populations was characterized by extensive inter-populational genotypic as well as allelic frequency heterogeneity and higher genic differentiation at all the esterase-coding loci. All the polymorphic loci in geographical populations of Z. indianus revealed latitudinal clines, and changes in allelic frequencies were found to correlate with latitude. The occurrence of higher genetic variability in Z. indianus populations was in agreement with its habitat-generalist or broad niche-width characteristics, i.e., the species populations utilized diverse food resources and displayed adaptation to variable climatic conditions. Thus, the observed genic divergence patterns in colonizing populations of Z. indianus could be maintained by balancing natural selection varying spatially along the north-south axis of the Indian sub-continent.

Animals↗

Life history trade-offs assemble ecological guilds.

Ecological theory predicts that competition for a limiting resource will lead to the exclusion of species unless the within-species effects outweigh the between-species effects. Understanding how multiple competitors might coexist on a single resource has focused on the prescriptive formalism of a necessary niche width and limiting similarity. Here, we show how continuously varying life histories and trade-offs in these characteristics can allow multiple competitors to coexist, and we reveal how limiting similarity emerges and is shaped by the ecological and evolutionary characteristics of competitors. In this way, we illustrate how the interplay of ecological and evolutionary processes acts to shape ecological communities in a unique way. This leads us to argue that evolutionary processes (life-history trait trade-offs) are fundamental to the understanding of the structure of ecological communities.

Animals↗

Spider prey (Araneae) of Trypoxylon (Trypargilum) rogenhoferi (Hymenoptera: Sphecidae) in southeastern Brazil.

Fifty five nests and 216 cells of Trypoxylon (Trypargilum) rogenhoferi were obtained from trap-nests (cut bamboo canes) in Santa Carlota Farm (Itaoca Section = IS and Santana Section = SS), Cajuru and on the São Paulo University Campus, Ribeirão Preto (= RP), both in the State of São Paulo, Brazil (Sept. 1993-Oct. 1995). The prey (spiders) of 40 cells from IS, 58 from SS and 39 from RP were identified. The greatest nesting frequency occurred during the hot and wet season (September to April). T. rogenhoferi preyed upon individuals of five spider families, with Araneidae (orb-weaver spiders) being the most frequent (99.6%). Alpaida aff. negro (58%) was the most frequently collected species in IS, followed by A. alto (24.8%); in SS (59.6%) and RP (64.7%) the most frequent species was A. veniliae, followed in SS by A. aff. negro (14.9%) and in RP by A. leucogramma (13.5%). The size of reproductive niches, H' = 1.25 (IS), H' = 1.30 (SS) and H' = 1.29 (RP) were not significantly different. There was a positive correlation between the reproductive niche width (H') and evenness.

Animals↗

Larval habits, host-plant associations, and speciation in nematine sawflies (Hymenoptera: Tenthredinidae).

Adaptive radiations consist of two intertwined processes, diversification of species and diversification of their ecological niches, but it is unclear whether there is a causal link between the processes. In phytophagous insects, ecological diversification mainly involves shifts in host-plant associations and in larval feeding habits (internal or external) on different plant parts, and several observations indicate that speciation is facilitated by host shifts. Data on host use in individual species suggest that internal feeders are less likely to colonize new hosts than external-feeding taxa and, consequently, increases in collective host ranges and species numbers should be slowed down in endophagous lineages. We tested these related hypotheses by using phylogenetic information to reconstruct the evolutionary history of larval resource use in the sawfly subfamily Nematinae, a group of 1000 plus species with a broad range of niches: the subfamily's combined host range includes over 20 plant families, and larvae may feed externally on leaves or needles, or internally, for example, in buds, fruits, leaves, or galls. The results show that: (1) Most internally feeding groups have evolved independently from external-feeding ancestors, but several distinct internal habits have appeared convergently multiple times; (2) Shifts among host taxa are clearly more common than changes in larval habits; (3) The majority of host switches have occurred among phylogenetically close plant groups, but many shifts are manifest among distantly related, ecologically proximate hosts; (4) Although external feeding characteristic of the common ancestor of Nematinae is associated with relatively high rates of host-shifting, internal feeders are very conservative in their host use; (5) In contrast, the effect of endophagy on speciation probabilities is more variable: net speciation rates are lowered in most internal-feeding groups, but a striking exception is found in species that induce galls on Salicaceae. The loose connection between collective host ranges and species diversity provides empirical support for theoretical models suggesting that speciation rates are a function of a complex interplay between "intrinsic" niche width and resource heterogeneity.

Animals↗

Periodic Lotka-Volterra competition equations.

The Lotka-Volterra competition equations with periodic coefficients derived from the MacArthur-Levins theory of a one-dimensional resource niche are studied when the parameters are allowed to oscillate periodically in time. Specifically, niche positions and widths, resource availability and resource consumption rates are allowed small amplitude periodicities around a specified mean value. Two opposite cases are studied both analytically and numerically. First only resource consumption rates are allowed to oscillate while niche dimensions and resource availability are held constant. The resulting oscillations in population densities and the strength of the system stability as they depend upon crucial relative phase and amplitude differences between the species' consumption rates are studied. This leads to a clear notion of "temporal niche" and of the effects that such oscillations can have on competitive coexistence. Secondly, all system parameters are allowed to oscillate, although the oscillatory consumption rates are assumed identical for both species. The effects on the population density oscillations and their averages are studied and the "best" choice of the common, periodic resource consumption rate for these two "identical" species competing for similar (even identical) niches is considered.

Animals↗

Evolutionary emergence of size-structured food webs.

Explaining the structure of terrestrial and aquatic food webs remains one of the most important challenges of ecological theory. Most existing models use emergent properties of food webs, such as diversity and connectance as parameters, to determine other food-web descriptors. Lower-level processes, in particular adaptation (whether by behavioral, developmental, or evolutionary mechanisms), are usually not considered. Here, we show that complex, realistic food webs may emerge by evolution from a single ancestor based on very simple ecological and evolutionary rules. In our model, adaptation acts on body size, whose impact on the metabolism and interactions of organisms is well established. Based on parameters defined at the organism scale, the model predicts emergent properties at the food-web scale. Variations of two key parameters (width of consumption niche and competition intensity) allow very different food-web structures and functionings to emerge, which are similar to those observed in some of the best-documented food webs.

Adaptation, Biological↗

Linking land use variables and invertebrate taxon richness in small and medium-sized agricultural streams on a landscape level.

In this study the average numbers of invertebrate species across an arable landscape in central Germany (surveys from 15 years in 90 streams at 202 sites) were assessed for their correlation with environmental factors such as stream width, land use (arable land, forest, pasture, settlement), soil type, and agriculture-derived stressors. The stress originating from arable land was estimated by the factor "risk of runoff," which was derived from a runoff model (rainfall-induced surface runoff). Multivariate analysis explained 39.9% of the variance in species number, revealing stream width as the most important factor (25.3%), followed by risk of runoff (9.7%). The results showed that wider streams--with or without agricultural stressors--contained significantly higher species numbers than narrower streams. This can be explained by potentially more diverse in-stream structures leading to more habitats and niches. However, negative effects on species number owing to runoff from arable land could be distinguished from the effect of stream width: the number of species within each stream width class significantly decreased with increasing risk of runoff. Therefore the factor "risk of runoff" is considered to express a significant proportion of the variability in macroinvertebrate communities caused by stressors of agricultural origin.

Agriculture↗

Excessive crown contours facilitate endemic plaque niches.

Facial and lingual surfaces of teeth restored with complete metal and porcelain-fused-to-metal crowns exhibited greater mean plaque accumulation than did the contralateral teeth. This cross-sectional study showed greater facial-lingual width and plaque indices for restored teeth than for natural or unrestored teeth. This relationship between plaque and excessive contours must not be considered wholly dependent and conclusive. The multifactorial phenomenon influencing plaque accumulation no doubt could contribute to the findings of this study. However, until demonstrated otherwise, the creation of artificial crown contours that are greater than natural tooth convexities must be considered another parameter promoting endemic plaque niches. Sound application of principles with respect to the form of teeth and supporting tissue can preclude contouring of restorations beneficial to the accumulation of dental plaque.

Crowns↗

Morphometric analysis of nonadult characters of common species of American gordiids (Nematomorpha: Gordioidea).

The nonadult stages, egg strings, eggs, larvae, and cysts of Gordius robustus, Paragordius varius, and Chordodes morgani are described morphometrically. The goal was to document the differences between species and to evaluate the usefulness of morphometrics in species identification. In concert, multivariate analysis of variance (MANOVA) and univariate analysis of variance (ANOVA, a posteriori contrasts) statistical tests demonstrated that each species is morphometrically distinguishable from all others. Additionally, discriminant function analysis indicated that postseptum length, pseudointestine length, and stylet width were the most important variables in the discrimination of species based on larval characters. Finally, differences in oviposition behaviors among these 3 species were found. It is suggested that ovipositioning differences may place larvae into distinct niches and may ultimately lead to the use of different paratenic hosts by different gordiid species.

Animals↗

Patterns of variation in wing morphology in the cactophilic Drosophila buzzatii and its sibling D. koepferae.

Drosophila buzzatii and D. koepferae are two sibling species that breed on the necrotic tissues of several cactus species and show a certain degree of niche overlap. Also, they show differences in several life history traits, such as body size and developmental time, which probably evolved as a consequence of adaptation to different host plants. In this work we investigate the ecological and genetic factors affecting wing morphology variation both within and between species. Three wing traits were scored, distal and proximal wing length and width in isofemale lines reared in two of the most important host cacti: Opuntia sulphurea and Trichocereus terschekii. Our results revealed that differences between species and sexes in wing size and shape were significant, whereas the cactus factor was only significant for wing size. Intraspecific analyses showed that differences among isofemale lines were highly significant for both size and shape in both species, suggesting that an important fraction of variation in wing morphology has a genetic basis. Moreover, the line by cactus interaction, which can be interpreted as a genotype by environment interaction, also accounted for a significant proportion of variation. In summary, our study shows that wing size is phenotypically plastic and that populations of D. buzzatii and D. koepferae harbour substantial amounts of genetic variation for wing size and shape. Interspecific differences in wing size and shape are interpreted in terms of spatial predictability of the different host plants in nature.

Animals↗

Standardized computed tomographic imaging and dimensions of the round-window niche.

Both the increasing usage of intratympanic medication to the inner ear through the round window and the popularity of cochlear implantation have raised interest in the anatomy of the round-window niche (RWN). The objectives of this study were to measure the RWN and to standardize a computed tomographic projection for measuring it. We included patients of all ages who underwent computed tomography for various reasons. We measured computed tomographic images acquired from 214 patients aged 4-85 years and included 414 ears and excluded 14 inflamed "wet" ears. We measured depth, width, and shape of the RWN and skull width. The RWN dimensions did not change with age, whereas the skull width increased with age in both genders throughout the patients' entire life. Folds and soft tissue could not be demonstrated in computed tomographic imaging. In conclusion, a special oblique projection that clearly demonstrates the RWN was reconstructed, and this reconstruction allows for standardized measuring.

Adolescent↗

Identification of photoacoustic transients during pulsed laser ablation of the human temporal bone: an experimental model.

Laser ablation of hard tissues during neurotologic operations has been accomplished with continuous-wave (CW) lasers in the visible and midinfrared spectrum. The mechanism of ablation at these wavelengths is secondary to photothermal-induced tissue destruction. As a result, significant thermal damage to surrounding tissue may occur. Pulsed ultraviolet (UV) lasers have been suggested as an alternative to the argon, KTP-532, and CO2 lasers currently used in clinical practice. The pulse length of Excimer lasers are considerably shorter than the thermal diffusion time of bone tissue, and as a consequence thermal injury is minimal. This makes pulsed lasers an attractive tool for tissue ablation in the ear: in essence a "cold knife." However, the short pulse width of Excimer lasers (typically 10-150 ns) can create large thermoelastic stresses in the ablation specimen. This study identifies the presence of these photoacoustic waves during the Excimer laser treatment of the cadaveric human temporal bone. A XeCl (lambda = 308 nm, tau p = 12 ns) excimer laser was used to ablate hard tissue surrounding the oval window and facial ridge with energies of 75, 45, 25, and 12 mJ/pulse. Spot size was estimated to be 0.5 mm2. Custom high-frequency polyvinyldifluoride (PVDF) piezoelectric film transducers were fabricated and attached to the promontory, round window niche, and facial ridges. The signals were amplified using a low-noise preamplifier and recorded on a digitizing oscilloscope. Photoacoustic waves were clearly identified. Notably, large acoustic waves were measured on the promontory and on both sides of the facial ridge. The implications and clinical relevance of these findings is discussed and compared to findings obtained from a model system.

Acoustics↗

Ecological consequences of broad spectrum versus narrow spectrum antibacterial therapy.

It is commonly assumed that antibiotics with a broad antibacterial spectrum affect the normal flora more than those with narrow spectrum. As exemplified in this overview, this in many cases is a misconception. Comparing two well-absorbed oral antibiotics like amoxycillin and cephradine, the former has more negative ecological consequences on the faecal flora. That is probably due to the effect of amoxicillin on enterococci, allowing resistant Escherichia coli to establish themselves in the ecological niche left vacant when the susceptible E. coli are eradicated. Absorption following oral administration may be of importance for the ecological pressure. However, norfloxacin which is absorbed incompletely, does not negatively affect the faecal flora. Other antibiotics may cause serious disturbances of the intestinal flora if excreted via the bile. Profound effects on the intestinal flora together with high incidences of diarrhoea have been demonstrated for ceftriaxone and cefoperazone while imipenem which has a broader spectrum but is not excreted via the bile, does not affect the faecal flora. It is concluded that factors other than the width of the antibacterial spectrum may be of importance for the ecological consequences of antibiotic treatment.

Administration, Oral↗

The Effect of Natural Mulches on Crop Performance, Weed Suppression and Biochemical Constituents of Catnip and St. John's Wort.

Because of expanding markets for high-value niche crops, opportunities have increased for the production of medicinal herbs in the USA. An experiment was conducted in 2001 and 2002 near Gilbert, IA, to study crop performance, weed suppression, and environmental conditions associated with the use of several organic mulches in the production of two herbs, catnip (Nepeta cataria L.) and St. John's wort (Hypericum perforatum L. 'Helos'). Treatments were arranged in a completely randomized design and included a positive (hand-weeded) control, a negative (nonweeded) control, oat straw, a flax straw mat, and a nonwoven wool mat. Catnip plant height was significantly greater in the oat straw than the other treatments at 4 wk through 6 wk in 2001; at 4 to 8 wk in 2002, catnip plant height and width was significantly lower in the negative control compared with the other treatments. Catnip yield was significantly higher in the flax straw mat than all other treatments in 2001. In 2002, St. John's wort yields were not statistically different in any treatments. All weed management treatments had significantly fewer weeds than the non-weeded rows in 2002. Total weed density comparisons in each crop from 2 yr showed fewer weeds present in the flax straw and wool mat treatments compared with positive control plots. There was no significant weed management treatment effect on the concentration of the target compounds, nepetalactone in catnip and pseudohypericin-hypericin in St. John's wort, although there was a trend toward higher concentrations in the flax straw treatment.

Journal Article↗

[Ontogenetic shifts in sexual dimorphism in head size and food habits of Eremias brenchleyi].

Studies on the ontogenetic shifts in sexual dimorphism in head size (head length and width) and food habits of Eremias brenchleyi were studied. The results showed that adult E. brenchleyi had no obvious sexual dimorphism in body size (SVL). Both sexes differed in head size since hatching, with males having larger heads than females. This sexual dimorphism was much more pronounced between adults than between juveniles (including hatchlings), largely because the increase velocity of head size of males with SVL was faster than that of females. Hatchlings had relatively larger heads to SVL than juveniles and adults, presumably because E. brenchleyi embryos allocated relatively more resources for early survival and growth of hatchlings. Head size of both sexes overall showed an allometric growth pattern with SVL increase ontogeny. Lizards of different sizes and sexes differed, in certain degrees, in food niche breadth and niche overlap. However, no direct evidence showed a noticeable contribution of the divergence in head size to the segregation of food niche between males and females, thereby mitigating the competition between both sexes.

Animals↗

LONGIFOLIA1 and LONGIFOLIA2, two homologous genes, regulate longitudinal cell elongation in Arabidopsis.

Plants have diversified their leaf morphologies to adapt to diverse ecological niches. The molecular components responsible for regulating leaf morphology, however, have not been fully elucidated. By screening Arabidopsis activation-tagging lines, we identified a dominant mutant, which we designated longifolia1-1D (lng1-1D). lng1-1D plants were characterized by long petioles, narrow but extremely long leaf blades with serrated margins, elongated floral organs, and elongated siliques. The elongated leaves of the mutant were due to increased polar cell elongation rather than increased cell proliferation. Molecular characterization revealed that this phenotype was caused by overexpression of the novel gene LNG1, which was found to have a homolog, LNG2,in Arabidopsis. To further examine the role of the LNG genes, we characterized lng1 and lng2 loss-of-function mutant lines. In contrast to the elongated leaves of lng1-1D plants, the lng1 and lng2 mutants showed slightly decreased leaf length. Furthermore, the lng1-3 lng2-1 double mutant showed further decreased leaf length associated with less longitudinal polar cell elongation. The leaf widths in lng1-3 lng2-1 mutant plants were similar to those in wild type, implying that the role of LNG1 and LNG2 on polar cell elongation is similar to that of ROTUNDIFOLIA3 (ROT3). However, analysis of a lng1-3 lng2-1 rot3-1 triple mutant and of a lng1-1D rot3-1 double mutant indicated that LNG1 and LNG2 promote longitudinal cell elongation independently of ROT3. Taken together, these findings indicate that LNG1 and LNG2 are new components that regulate leaf morphology by positively promoting longitudinal polar cell elongation independently of ROT3 in Arabidopsis.

Arabidopsis↗