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PubMed2004

Neutral carbene analogues of the heaviest Group 13 elements: consideration of electronic and steric effects on structure and stability.

The neutral monovalent Group 13 beta-diketiminato complexes [CH{(CF3)2CN-2,6-iPr2C6H3}2In] and [CH{(Me)2CN-2,6-iPr2C6H3}2Tl] have been synthesised by analogous 'one-pot' procedures involving reaction of [KN(SiMe3)2] with the appropriate beta-imino-enamine and Group 13 iodide. The structure of the indium complex reveals that replacement of the ligand backbone methyl groups of the previously reported complex [CH{(Me)2CN-2,6-iPr2C6H3}2In] with trifluoromethyl substituents results in only minor modifications to the dimensions of the NCCCNIn metallacycle. The electronic structures of both indium species were interrogated by DFT calculations to reveal similar frontier molecular orbital schemes. In agreement with calculations performed previously on the aluminium and gallium complexes, [CH{(Me)2CN-2,6-iPr2C6H3}2Al] and [CH{(Me)2CN-2,6-iPr2C6H3}2Ga], the HOMO in both indium species comprises a metal-based sp-hybrid while the LUMO is a ligand-based orbital of pi symmetry. The vacant indium p-orbital is represented by the LUMO + 1. Although incorporation of the fluorinated substituents results in a stabilisation of the system overall, the stabilities and observed structural features of the complexes are reasoned to be primarily a result of the steric profile of the very bulky ligands and not through any redistribution of the electron density within the cyclic species. The thallium complex is isostructural to the analogous and previously reported aluminium, gallium and indium species. The greater stability of the monovalent state however is reflected in a reordering of the orbital energies and a stabilisation of the metal-based orbitals in the frontier region of the MO scheme.

Journal Article↗

PubMed2003

The three-dimensional solution structure of NaD1, a new floral defensin from Nicotiana alata and its application to a homology model of the crop defense protein alfAFP.

NMR spectroscopy and simulated annealing calculations have been used to determine the three-dimensional structure of NaD1, a novel antifungal and insecticidal protein isolated from the flowers of Nicotiana alata. NaD1 is a basic, cysteine-rich protein of 47 residues and is the first example of a plant defensin from flowers to be characterized structurally. Its three-dimensional structure consists of an alpha-helix and a triple-stranded antiparallel beta-sheet that are stabilized by four intramolecular disulfide bonds. NaD1 features all the characteristics of the cysteine-stabilized alphabeta motif that has been described for a variety of proteins of differing functions ranging from antibacterial insect defensins and ion channel-perturbing scorpion toxins to an elicitor of the sweet taste response. The protein is biologically active against insect pests, which makes it a potential candidate for use in crop protection. NaD1 shares 31% sequence identity with alfAFP, an antifungal protein from alfalfa that confers resistance to a fungal pathogen in transgenic potatoes. The structure of NaD1 was used to obtain a homology model of alfAFP, since NaD1 has the highest level of sequence identity with alfAFP of any structurally characterized antifungal defensin. The structures of NaD1 and alfAFP were used in conjunction with structure-activity data for the radish defensin Rs-AFP2 to provide an insight into structure-function relationships. In particular, a putative effector site was identified in the structure of NaD1 and in the corresponding homology model of alfAFP.

Amino Acid Sequence↗

PubMed1986

The cytoskeleton, endocytosis and cell polarity in the mouse preimplantation embryo.

The process of cell polarization in mouse 8-cell embryos includes the formation of a polar cluster of cytoplasmic endocytotic organelles (endosomes) subjacent to an apical surface pole of microvilli. A similar polar morphology, supplemented by basally localized secondary lysosomes, is evident following division to the 16-cell stage in outside blastomeres, precursors of the trophectodermal lineage. The roles of microfilaments and microtubules in generating and stabilizing endocytotic and surface features of polarity (visualized by horseradish peroxidase incubation and indirect immunofluorescence labeling, respectively) have been evaluated by exposure of 8- and 16-cell embryos and 8-cell couplets to drugs (cytochalasin D, colcemid, nocodazole) that disrupt the cytoskeleton. The generation of endocytotic polarity is dependent upon intact microtubules and microfilaments, but the newly established endocytotic pole in blastomeres from compacted 8-cell embryos appears to be stabilized exclusively by microtubules. Polarized endocytotic organelles at the 16-cell stage are more resistant to drug treatment than at the 8-cell stage (probably due to microfilament interactions) indicating a maturation phase in the polar cell lineage. Microtubules are also responsible for the orientation of endocytotic clusters along the cell's axis of polarity. In contrast, the generation and stability of polarity at the cell surface appears relatively independent of cytoskeletal integrity. The results are discussed in relation to the mechanisms that may control the development and stabilization of polarization during cleavage.

Animals↗

PubMed2006

Structural relationships in small molecule interactions governing gas-phase enantioselectivity and zwitterionic formation.

Gas-phase zwitterionic amino acids were formed in complexes of underivatized beta-cyclodextrin through reactions with a neutral base, n-propylamine. The reaction was performed in the analyzer cell of an electrospray ionization-Fourier transform mass spectrometer. Most of the natural amino acids were studied with three cyclodextrin hosts including alpha-, beta-, and gamma-cyclodextrin to understand better the structural features that lead to the stabilization of the zwitterionic complexes. Molecular dynamics calculations were performed to provide insight into the structural features of the complexes. The rate constants of the reactions were obtained through kinetic plots. Examination of both L- and D-enantiomers of the amino acid showed that the reaction was enantioselective. The reaction was then employed to analyze mixtures of Glu enantiomers naturally occurring in the bacteria Bacillus licheniformis.

Amino Acids↗

PubMed1996

What do developmental mapping rules optimize?

Convergence ratios between pre- and postsynaptic cells in the visual system vary widely between cell classes, areas of the visual field, between individuals and between species. Proper stabilization of the convergence and divergence of single visual neurons is critical for visual integration generally, and for specific functions such as those of rod and cone pathways, or the center and peripheral regions of the visual field. In early development, retinal ganglion cells, target cells and all their processes are produced in excess and stabilize at certain mature values. The intent of the investigations described here is to determine what features of cell connectivity are stabilized over normal variability by these developmental processes and how such stabilization is accomplished, using the developing mammalian retinotectal system as an example. Orderly compression of the retinotopic map into a half tectum was induced by a partial tectal ablation at birth in hamsters, increasing the ratio of retinal ganglion cells to superior colliculus target cells. The convergence problem is solved in this case by undersampling the spatial array with respect to normal, preserving local spatial resolution, but potentially reducing sensitivity or introducing aliasing artifacts. Receptive field sizes of single neurons are indistinguishable from normal, and reduction of branching of presynaptic axon arbors is the mechanism of the remapping. Behaviorally, though the entire visual field is still represented in the remaining colliculus, the solution has a cost in decreased probability and increased latency to orient to visual stimuli, particularly in the peripheral visual field. The generality of this solution for retinal and other central convergence regulation problems is evaluated.

Animals↗

PubMed2006

NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1: new insights into the recoding event of the ribosomal trans-translation.

The transfer-messenger RNA (tmRNA) pseudoknot PK1 is essential for bacterial trans-translation, a ribosomal rescue mechanism. We report the solution structure of PK1 from Aquifex aeolicus, which despite an unprecedented small number of nucleotides and thus an unprecented compact size, displays a very high thermal stability. Several unusual structural features account for these properties and indicate that PK1 belongs to the class of ribosomal frameshift pseudoknots. This suggests a similarity between the mechanism of programmed ribosomal frameshifting and trans-translation.

Frameshifting, Ribosomal↗

PubMed2000

Four structural risk factors identify most fibril-forming kappa light chains.

Antibody light chains (LCs) comprise the most structurally diverse family of proteins involved in amyloidosis. Many antibody LCs incorporate structural features that impair their stability and solubility, leading to their assembly into fibrils and to their subsequent pathological deposition when produced in excess during multiple myeloma and primary amyloidosis. The particular amino acid variations in antibody LCs that account for fibril formation and amyloidogenesis have not been identified. This study focuses on amyloidogenesis within the kappa1 family of human LCs. Reanalysis of the current database of primary structures of proteins from more than 100 patients who produced kappa1 LCs, 37 of which were amyloidogenic, reveals apparent structural features that may contribute to amyloidosis. These features include loss of conserved residues or the gain of particular residues through mutation at sites involving a repertoire of approximately 20% of the amino acid positions in the light chain variable domain (V(L)). Moreover 80% of all kappa1 amyloidogenic V(L)s are identifiable by the presence of at least one of three single-site substitutions or the acquisition of an N-linked glycosylation site through mutations. These findings suggest that it is feasible to predict fibril propensity by analysis of primary structure.

Alzheimer Disease↗

PubMed2003

[Study on relationship between emotional stability in flight and nerve system excitability].

OBJECTIVE: To study the related factors of emotional stability in flight. METHOD: Based on the operable definition of emotional stability in flight and the related literature review, 63 experienced pilots and flight coaches were investigated and the other-rating questionnaire of emotional stability in flight was established. To test the senior nerve system, Uchida Kraeplin (UK) test was administrated on 153 19-21 years old male student pilots of the second grade in the department of flight technique in China Civil Aviation College, who were selected through 13 h flight, 35 h solo flight, and acted as the standardization group. In the end, the correlation was explored between the testing results and their emotional behavioral characteristics in flight. RESULT: Significant positive correlation was found between emotional feature indexes of emotional stability in flight and excitability in UK test. CONCLUSION: The excitability in UK test are good predictors for emotional stability in flight.

Adult↗

PubMed2001

Enhanced loop DNA folding induced by thymine-CH3 group contact and perpendicular guanine-thymine interaction.

A remarkable stabilizing effect induced by T-CH3 group and perpendicular guanine-thymine interactions in the DNA loop conformation has been demonstrated for the d(TTTG) loop structure using UV melting, high resolution NMR, distance geometry, and molecular dynamics studies. Contrary to the previously published d(TTCG) sequence that exhibits no specific inter-nucleotide interaction, we have found that d(TTTG), which differs only by one nucleotide with the d(TTCG) sequence (C7 --> T7), forms a rather stable and well-defined loop structure. Two characteristic structural features account for the stabilization of an otherwise flexible loop structure; the second loop T (T6) residue folds into the minor groove and engages in perpendicular interaction with the G8-NH2, while the third loop T (T7) residue stacks well upon the closing T5 x G8 wobble base pair and exhibits good contacts with many of the loop T5 and T6 sugar protons, which may form a hydrophobic core in the loop region. The importance of the bulky T7-CH3 was also proved by the UV melting study; while d(TTCG) hairpin exhibits a lower melting point (74.5 degrees C) than d(TTTG) hairpin (80.5 degrees C), d(TT(5-methyl)CG) hairpin resumes the same higher melting point (80 degrees C). Similarly, the fact that the melting temperature (74 degrees C) of d(TTTI) is lower than that of d(TTTG) indicates the critical role played by the G8-NH2 group. Our structural studies of the d(TTTG) loop indicate that DNA and RNA use a different strategy to establish stable tertiary folds. Comparison with several other pyrimidine-rich loop hairpins suggests that different minor-groove folding modes exist for the folding thymidine residue.

Base Pairing↗

PubMedDate not supplied

Polymorphism of cellular physicochemical [correction of physiocochemical] features and cancer: a review.

The role of polymorphism of some physicochemical characteristics of cellular features in cancer are discussed. Data in the literature and our previous observations indicate that the probability of oncogenesis depends on the variability of these characteristics and the host's homeostasis and is manifested as a conflict between stability and variability of these features. In addition, a high degree of genetic polymorphism was associated with tumorigenesis. Changes in "behavior" of the p53 gene and an increase in the production of the soluble 51 kDa protein in cancer patients are examples of such changes. An organism and its cells can be considered as two interdependent systems which, in extreme situations become antagonistic and competitive. As such cancer develops mainly due to external effects. The last cause deep changes in the balance between stability and variability of physicochemical parameters of cellular features and result in some internal, including genomic, alterations. These culminate in cell death (apoptosis), or cause cells to begin a new stage in their lives, sometimes leading to tumors. In this respect, cancer can be regarded as a rescuer of the cells although it brings about the death of the host. We suggest that the variability of physicochemical features of cells is one of important reasons for the development of cancer.

Animals↗

PubMed2005

Calibrated lateral crus stabilizer.

BACKGROUND: Fundamental shortcomings of the currently available instrumentation prompted the need for a device that facilitates stabilization of the lateral crus while at the same time allowing for precise measurement of the retained cartilage fragment along the anatomic axis of the lateral crus. METHODS: This article presents a new instrument, the calibrated lateral crus stabilizer, and highlights its unique features, which facilitate the precise and symmetric excision of the lateral crural cartilage. RESULTS: A lateral crus stabilizer with a calibration mechanism is introduced that provides the means for precise removal of the excess portion of the lower lateral cartilage during rhinoplasty. CONCLUSIONS: There was a need for improved instrumentation to stabilize the alar cartilage than what is currently available. New instrumentation is presented that answers that need.

Calibration↗

PubMedDate not supplied

Spherocentric knee arthroplasty.

The spherocentric knee, designed to allow triaxial rotation and provide intrinsic stability, includes desirable design features of metal on high density polyethelene bearing surfaces, metal support for all plastic components, metal-cement-bone interfacing for all fixation surfaces, sufficient strength to eliminate fatigue fracture of metallic components as a potential source of failure, cam deceleration for hyperextension control, and an inverted central plastic socket which minimizes wear. The system assures a low coefficient of friction and thereby minimizes loosening. This prosthesis has been used for surgical arthroplasty in 134 knees with gross instability or severe fixed deformity or both, in which optimal results would not have been anticipated with non-articulated resurfacing prostheses. The patients have been followed for an average of nearly 3 years (range one to 5 years). Results in terms of correction of deformity, improvement of stability, range of motion, pain relief and improved function, have been outstanding. Problems of infection, loosening and fracture of adjacent bone have been less than with other intrinsically stable prostheses (hinge prostheses) and are less than most reports of non-articulated resurfacing prostheses followed for a comparable time. There have been no failures within the prosthesis. Our loose prostheses represent failures that occurred between the prostheses and the bone. The spherocentric prosthesis is the prosthesis of choice for arthroplasty of a knee with severe preoperative deformity or severe instability or both in which optimal results would not be anticipated following insertion of a resurfacing type of prosthesis.

Adult↗

PubMed1997

Binding of microtubules to transitional elements in oligodendrocytes of the myelin mutant taiep rat.

The presence of microtubules physically bound to smooth endoplasmic reticulum profiles of oligodendrocytes constitutes the most conspicuous feature observed in the myelin mutant taiep rat. The endoplasmic reticulum membranes associated with microtubules were morphologically characterized as transitional elements that constitute the intermediate compartment according to their topographic location close to the cis-Golgi apparatus. The development of this surprising microtubular defect appears to be associated with the early events of myelination. Transitional elements associated with microtubules operate in protein transport from endoplasmic reticulum to cis-Golgi. This microtubular defect could explain the dysmyelination and neurologic alterations observed in taiep rats. Moreover, these findings allow us to propose that there is a blockage of protein traffic at the intermediate compartment of taiep oligodendrocytes, a situation that could explain the hypomyelinated axons observed in this myelin mutant. The binding of microtubules to membranous organelles promotes the stabilization of microtubules, a feature that has important implications regarding its accumulation within the cytoplasm of oligodendrocytes during the temporal evolution of this neurologic disorder. The taiep rat is a myelin mutant with a long survival and could be a useful model for understanding dysmyelinating diseases in which the intracellular transport of myelin components is affected.

Animals↗

PubMed1998

Characterization of sequence elements involved in p53 stability regulation reveals cell type dependence for p53 degradation.

The growth suppressive properties of the tumor suppressor protein p53 are activated upon DNA damage. The activation of p53 is reflected in increased p53 levels which are, at least in part, the result of an extended half-life of the protein. Although this suggests that stabilization of p53 is an intrinsic feature of p53 activation, the mechanisms involved in p53 degradation and stabilization are poorly understood. Here we report on the identification of an internal deletion mutant of wild-type p53, termed delta62-96, which can be stably expressed in various cell lines. This deletion mutant has a turnover rate similar to wild-type p53 and its stability is upregulated by treatment with UV light. In cell lines that express endogenous mutant or no p53, however, delta62-96 appears to be stable, strongly indicating that these cell lines have lost the ability to degrade p53. Further characterization of delta62-96 by mutational analyses defines sequence and structural requirements for p53 degradation and indicates that none of the known p53 phosphorylation sites is essential with respect to p53 stability regulation upon UV-irradiation.

3T3 Cells↗

PubMed1999

Landscape and history: a multidisciplinary approach. Project Group Environmental History (P.G.E.H.).

Human societies have inhabited parts of the Central European country of Austria for thousands of years. The development process shopping the landscape by this long period of human impact remains poorly understood. The present study is an attempt to research landscape history on a local scale and compares an alpine, pre-alpine and midland-village area in Austria. We have developed an appropriate concept to describe the landscape ecology features of the study areas in several stages of the past from 1733 on. The landscape analysis is based on the interpretation of different kinds of historical data (e.g., documents, maps) going back to the pre-industrial epoch, which has--at least in terms of landscape ecology--hardly been accessible until now. An important aim of the study is to localize the historical information in the landscape. Individual plots can be traced back even to the early 14th century. Based on the quality of the available historical data, the historical landscape is analysed with regard to categories such as form and intensity of land use, distribution of nutrients and water as well as the pattern of landscape elements and their ecological functions. The comparison of present stages with former ones yields detailed knowledge on the dynamics and stability of landscape structure. This approach allows present-day land units to be identified as a result of long-term development going back to Medieval times. The primary aim of the study is to analyze factors that bring about change or resist it by creating stability. We therefore examine factors coupling landscape structure, agricultural production and population development. For this reason, we have studied the people and the evidence for their labor over a period of 400 years (1400-1800). Besides demographic data of the 18th and 19th century, historical registrar material has been collected; it enabled the land tenures to be reconstructed from the 15th to the 19th century. This type of data is a valuable source of information for investigating the socio-economic status of a local population or its farmsteads. The collected data reveal similarities in trends between time series of demography, land holding stability and landscape ecology features. A theoretical model shows how population, production and natural resources are connected in the investigated pre-modern communities.

Agriculture↗

PubMed2004

Eudragit RL100 nanoparticle system for the ophthalmic delivery of cloricromene.

A Eudragit RL100 polymer nanoparticle system loaded with cloricromene was prepared and characterized on the basis of physicochemical properties, stability and drug release features. To investigate the ocular bioavailability of cloricromene after inclusion in the polymer matrix, the new nanoparticle system was topically administered in the rabbit eye and compared with an aqueous solution of the same drug. The nanoparticle system showed interesting size distribution and surface charge values, suitable for ophthalmic application. The results indicated that the dispersion of cloricromene within Eudragit RL100 polymer nanoparticles increased its ocular bioavailability and enhanced the biopharmaceutical profile. The new cloricromene-loaded nanoparticle system described here may be useful in clinical practice.

Acrylic Resins↗

PubMed2002

Rationale, principles and experimental evaluation of the concept of soft stabilization.

The apparent clinical success of spinal stabilization methods that restrict rather than abolish movement in relieving mechanical back pain indicates that the concept of the aetiology of back pain should be reviewed. Further understanding of how degeneration affects disc biomechanics, and an understanding of how current soft stabilization systems alters them, may allow us to define more precisely what are the essential requirements of an ideal soft stabilization system. It appears that abnormal patterns of loading rather than abnormal movement are the reason that disc degeneration causes back pain in some patients. Abnormal load transmission is the principal cause of pain in osteoarthritic joints, and both osteotomy and, indeed, joint replacement succeed because they alter the load transmission across the joint. This concept is supported by the fact that abnormal patterns of stress distribution measured across the disc correlate with painful discs on discography. Clinically, it is often noted that back pain is primarily related to position or posture, rather than movement of the lumbar spine. Clinical success after solid fusion is unpredictable because it does not necessarily prevent painful loading across the disc, and also it may interfere with maintenance of sagittal balance in varying postures. The Graf ligament restricted flexion, and was modestly successful. It unfortunately increased the load over the posterior annulus. The Dynesys system reduces movement both in flexion and extension, and appears to be more successful. However, often it also unloads the disc to a degree that is unpredictable. The authors believe that this unloading of the disc is an important feature of a flexible stabilization system. A new a design of a flexible stabilization system has recently been described in an in vitro study, which unloads the disc by introduction of a load-sharing fulcrum near the axis of movement together with an elastic posterior ligament. This design produces maximal unloading of the disc, whilst allowing a restricted range of movement, which serves the important purpose of allowing the patient to maintain sagittal balance in varying postures.

Humans↗

PubMed2006

[The biomechanical study of craniovertebral junction fixation with posterior transarticular screw].

OBJECTIVE: To evaluate the stability of biomechanics of occipitoatlantoaxial reconstruction with transarticular screw fixation. METHODS: Twelve fresh human cadaveric occipitocervical spine specimens were mounted in a custom-designed, spine-testing machine that applied pure moments while recording the three-dimensional angular movement at occiput (Oc)-C(1) and C(1 - 2) segments. The specimens were tested under seven different conditions: the intact (intact group), the occipitoatlantoaxial instability (Destabilized group), fixation with Ti-cable plus bone graft group (cable + graf group), fixation with the transarticular fixation (CTS group), fixation with SUMMIT occitocervical spinal fixation system (SUMMIT group), fixation with transarticular screw plus bone graft (CTS + graf group), and fixation with SMMIT system and plus graft group (SUMMIT + graf group). The data obtained were statistically analyzed. RESULTS: The CTS group reduced motion to well within the normal rang. In the Oc-C(1) segment, The CTS group and SUMMIT group allowed a very small rang of motion (ROM) and neutral zone (NZ) during lateral bending and axial rotation. The ROM and NZ during flexion and extension of the SUMMIT group, were significantly smaller than those of cable + graf group and CTS group (6.64 degrees +/- 0.59 degrees, 2.49 degrees +/- 0.26 degrees, 0.50 degrees +/- 0.03 degrees, 0.21 degrees +/- 0.01 degrees, 0.27 degrees +/- 0.07 degrees, 0.13 degrees +/- 0.01 degrees vs 10.01 degrees +/- 1.26 degrees, 3.80 degrees +/- 0.79 degrees, 7.93 degrees +/- 1.34 degrees, 3.18 degrees +/- 0.95 degrees, 9.54 degrees +/- 0.87 degrees, 5.93 degrees +/- 0.74 degrees, P < 0.05). In the C(1 - 2) segment, ROM and NZ in all directions of CTS group were smaller in rotation than SUMMIT group (1.64 degrees +/- 0.39 degrees, 0.61 degrees +/- 0.15 degrees, 0.14 degrees +/- 0.05 degrees, 0.02 degrees +/- 0.01 degrees, 0.32 degrees +/- 0.04 degrees, 0.08 degrees +/- 0.01 degrees, vs 0.21 degrees +/- 0.04 degrees, 0.07 degrees +/- 0.03 degrees, 0.21 degrees +/- 0.12 degrees, 0.10 degrees +/- 0.02 degrees, 2.92 degrees +/- 0.28 degrees, 1.27 degrees +/- 0.11 degrees, all P < 0.05). There was no significant difference in ROM and NZ in all directions between CTS + graf group and SUMMIT + Graf group (P > 0.05). CONCLUSION: In vivo biomechanics studies show that posterior occipitocervical transarticular fixation has unique features in reconstructing dynamic stability of the occipitoatlantoaxis, especially in controlling stability of rotation and lateral flexion, thus ensuring successful fusion of the implanted bone and allowing for clinical use of the technique.

Adult↗