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Unexpected structural diversity in alkali metal azide-crown ether complexes: syntheses, X-ray structures, and quantum-chemical calculations.

A series of alkali metal azide-crown ether complexes, [Li([12]crown-4)(N3)], [Na([15]crown-5)(N3)], [Na([15]crown-5)(H2O)2]N3, [K([18]crown-6)(N3)(H2O)], [Rb([18]crown-6)(N3)(H2O)], [Cs([18]crown-6)(N3)]2, and [Cs([18]crown-6)(N3)(H2O)(MeOH)], has been synthesised. In most cases, single crystals were obtained, which allowed X-ray crystal structures to be derived. The structures obtained have been compared with molecular structures computed by density functional theory (DFT) calculations. This has allowed the effects of the crystal lattice on the structures to be investigated. Also, a study of the M-N(terminal) metal-azide bond length and charge densities on the metal (M) and terminal nitrogen centre (N(terminal)) in these complexes has allowed the nature of the metal-azide bond to be probed in each case. The bonding in these complexes is believed to be predominantly ionic or ion-dipole in character, with the differences in geometries reflecting the balance between maximising the coordination number of the metal centre and minimising ligand-ligand repulsions. The structures of the crown ether complexes determined in this work show the subtle interplay of such factors. The significant role of hydrogen bonding is also demonstrated, most clearly in the structures of the K and Rb dimers, but also in the chain structure of the hydrated Cs complex.

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Development and validation of COMPASS force field parameters for molecules with aliphatic azide chains.

To establish force-field-based (molecular) modeling capability that will accurately predict condensed-phase thermophysical properties for materials containing aliphatic azide chains, potential parameters for atom types unique to such chains have been developed and added to the COMPASS force field. The development effort identified the need to define four new atom types: one for each of the three azide nitrogen atoms and one for the carbon atom bonded to the azide. Calculations performed with the expanded force field yield (gas-phase) molecular structures and vibrational frequencies for hydrazoic acid, azidomethane, and the anti and gauche forms of azidoethane in good agreement with values determined experimentally and/or through computational quantum mechanics. Liquid densities calculated via molecular dynamics (MD) simulations were also in good agreement with published values for 13 of 15 training set compounds, the exceptions being hydrazoic acid and azidomethane. Of the 13 compounds whose densities are well simulated, nine have experimentally determined heats of vaporization reported in the open literature, and in all of these cases, MD simulated values for this property are in reasonable agreement with the published values. Simulations with the force field also yielded reasonable density estimates for a series of 2-azidoethanamines that have been synthesized and tested for use as hydrazine-alternative fuels.

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Limits of cryofixation as seen by Fourier transform infrared spectra of metmyoglobin azide and carbonyl hemoglobin in vitrified and freeze-concentrated aqueous solution.

The limits of cryofixation were probed by investigating metmyoglobin azide and carbonyl hemoglobin in approximately 5 wt% aqueous solution by Fourier transform infrared spectroscopy. Spectra of solutions cooled slowly and recorded in steps between 295 K and 190 K are compared with those obtained by "hyperquenching" either into their glassy states at 80 K, or into freeze-concentrated solution at 170 K. For metmyoglobin azide we conclude from an analysis of its covalently and ionically bound azide that it is impossible to freeze-in its high-spin/low-spin equilibrium even by hyperquenching, and that its vitrified state must correspond to a temperature T < 226 K for the Fe(II) site of the protein. In the amide I spectral region of carbonyl hemoglobin (HbCO), a band at approximately 1654 cm-1 due to alpha-helical structures is the dominant band in spectra recorded at ambient temperature and in the vitrified state, but in the spectrum of HbCO quenched at similar rates into a freeze-concentrated state, a band at approximately 1650 cm-1, tentatively assigned to unordered structures, becomes the dominant feature. This band is absent in the spectra of freeze-concentrated samples obtained by heating a vitrified sample to 170 K. We surmise that HbCO is dehydrated by freeze-concentration to a larger extent in solution quenched rapidly at 170 K than in a vitrified solution heated to 170 K, and that this dehydration is the primary cause for HbCO's perturbation. We conclude that freeze-concentration induced by heating a vitrified solution can cause less perturbations of a protein than does quenching into a freeze-concentrated state. Therefore it can be advantageous for the practice of freeze-etching to vitrify first a solution by "hyperquenching" and thereafter freeze-etch at e.g. approximately 170 K.

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Azide addition to give a tetra-azazirconacycle complex.

Addition of the dilithium salt, ortho-(Me3SiNLi)2C6H4, to ZrCl4 affords a base-free, D2d-symmetric complex Zr(IV)[ortho-(Me3SiN)2C6H4]2 (2), with rigorously planar ortho-phenylenediamine ligands. Lewis acidic 2 readily coordinates donor ligands such as NHEt2 to give the five-coordinate complex, Zr(IV)(NHEt2)[ortho-(Me3SiN)2C6H4]2 (3), which is also accessible by the reaction of Zr(NEt2)4 with 2 equiv of ortho-(Me3SiNH)2C6H4. Aryl azides react with 2 and 3 to give an unusual tetra-azametallacycle complex, 4, via 1,2-addition of a ligand N-Si bond to the organic azide. An X-ray crystal structure of 4 reveals a planar, five-membered metallacycle comprising the zirconium atom, one nitrogen atom of the ortho-(Me3SiN)2C6H4 ligand, and all three nitrogen atoms of the aryl azide.

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Dramatic variation of magnetic exchange through double end-on azide bridges in a series of ladder-like copper(II) coordination polymers.

Three ladder-like coordination polymers, [Cu2(phprpy)2-mu-(N3)2(N3)2], 1; [Cu2(terpy)2-mu-(N3)4Cu2-mu-(N3)2(N3)2], 2; and[Cu2(terpy)2-mu-(N3)2(N3)2Cu3-mu-(N3)4(N3)2], 3, consisting of Cu2+ ions with double end-on azide bridges were synthesized, their crystal structures and magnetic properties were determined, and spin dimer analysis was performed to explain the signs and strengths of their strong spin exchange interactions [phprpy is 4-(3-phenylpropyl)pyridine and terpy is 2,2':6,2''-terpyridine]. Although these compounds have ladder-like arrangements of Cu2+ ions, their magnetic structures are described as isolated dimers for 1 and 2 and as isolated trimers for 3. The predominant spin exchange paths in 1-3 have double end-on azide bridges linking adjacent Cu2+ ions, and the geometrical parameters of these bridging structures are similar. However, the spin dimer of 1 exhibits a strong ferromagnetic coupling; that of 2, a strong antiferromagnetic coupling; and that of 3, a weak ferromagnetic coupling. These findings are well explained by the present spin dimer analysis and show that the nature and geometry of the nonbridging ligands can have a strong influence on the sign and strength of the spin exchange interaction between Cu2+ ions connected by double end-on azide bridges.

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Solvothermal synthesis of nanocrystalline copper nitride from an energetically unstable copper azide precursor.

Nonaqueous solvothermal chemical reactions have found extensive utility in the growth of inorganic non-oxide materials. This report describes the successful use of organic solvothermal environments to synthesize energetically unstable copper azide precursors that are then decomposed in situ to crystalline metastable copper nitride at temperatures below 200 degrees C. A comparison of Cu3N products formed from nonpolar (toluene) and coordinating (THF) solvents is described. The cubic Cu3N products are nanocrystalline with aggregated particle-like extended structures and were characterized by X-ray diffraction, electron microscopy, IR spectroscopy, and mass spectrometry. The thermal stability and composition of Cu3N was examined by thermogravimetric analysis and bulk elemental analysis. The particle surfaces contain bound residual solvent species that can be removed by heating. The poorly coordinating solvent, toluene, lead to a more crystalline product containing less residual organic content. Benchtop reactions were performed to follow the temporal formation and decomposition of metal azide intermediates. These studies provided more detailed information on the progression of metal azide to metal nitride materials in a solvothermal environment.

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Organotellurium(VI) azides and halides.

The reaction of azide with organotellurium(VI) halides Ph(5)TeBr and cis-(biphen)(2)TeF(2) (biphen = 2,2'-biphenyldiyl) resulted in the formation and isolation of Ph(5)TeN(3) (1) and cis-(biphen)(2)Te(N(3))(2) (2), which are the first tellurium(VI)-azide species. In addition to spectroscopic data, both crystal structures have been determined. Furthermore, the stability of possible Te(VI) species with higher azide contents Ph(x)()Te(N(3))(6)(-)(x)() and Me(x)()Te(N(3))(6)(-)(x)() as well as the syntheses and properties of their Ph/Me(x)()TeF(y)() precursors was investigated, including the crystal structure determination of trans-Ph(2)TeF(4) (3). Ab initio and density functional studies of all molecules regarding the structures and electronic populations were performed.

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Equilibria of the 5-substituted-1,2-acylated tetrazoles and imidoyl azides

Equilibrium of acylated-5-alkyloxy (aryloxy) tetrazoles and acylated-imidoyl azides was measured by (1)H NMR and/or IR spectroscopy. In nonpolar solvents the relatively weakly electron-withdrawing acyl group (CO(2)CH(3)) favored acylation at the 2-position of the 5-substituted tetrazoles. Moderately electron-withdrawing groups (CO(2)CH(2)CCl(3), CO(2)CCl(3)) move the equilibrium to the side of 1-acyl-5-substituted tetrazole. Strong electron-withdrawing groups (CN, SO(2)CH(3), SO(2)CF(3)) favored the formation of the azide. The rate of isomerization of tetrazoles and the azide increases at higher concentrations and polarity of the solvent. In solid phase or in the nonpolar solvent (diethyl ether), only one of the three isomers is present, its structure depending on the nature of the substituents at the 1 or 2 positions of tetrazoles.

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Solvent- and temperature-tuned orientation of ferrocenyl azide inside beta-cyclodextrin.

An induced circular dichroism (ICD) solution study on the orientation of ferrocenyl azide within the beta-cyclodextrin cavity is described. In DMSO, ferrocenyl azide prefers an axial inclusion, whereas in ethylene glycol and DMSO/H2O = 50/50 an equatorial alignment dominates. As shown by temperature-dependent ICD spectra, at lower temperatures ferrocenyl azide adopts preferentially an equatorial arrangement, whereas at higher temperatures an axial one is favored. Temperature and solvent effects on the co-conformation of ferrocene noncovalently bound to cyclodextrin have never been observed before.

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Oxidation of azides by the HOF.CH3CN: a novel synthesis of nitro compounds.

The HOF.CH3CN complex, readily prepared by passing F2 through aqueous acetonitrile, is an exceptionally efficient oxygen transfer agent. It is unique in its capacity to oxidize various azides into the corresponding nitro derivatives. This method requires short reactions times and room temperature or below, and the desired nitro compounds were usually isolated in very good yields. The respective nitroso derivatives are believed to be the intermediates in this reaction. Functional groups such as aromatic rings, ketones, nitriles, halides, alcohols, and esters are tolerated. Sulfides react with HOF.CH3CN usually at the same rate as azides. Amines and olefins, however, react faster, so they have to be protected first. Nitro derivatives with various oxygen isotopes can be made using the labeled H18OF.CH3CN. In the case of chiral azides the stereochemistry around the nitrogen-bonded carbons is retained.

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Photocatalytic reduction of an azide-terminated self-assembled monolayer using CdS quantum dots.

Ordered, tightly packed aryl-azide-terminated, self-assembled monolayers (SAMs) were created on gold substrates from a new disulfide precursor. These monolayers were reduced at least partially in an aqueous environment using approximately 2 nm CdS quantum dots (Qdots) as photocatalysts to give mixed monolayers of arylamine- and aryl azide-terminated species. The CdS photocatalysts were made available for the reaction by exposure of the azide-terminated SAM to Qdots initially in solution or by preadsorption of the CdS nanoparticles on the SAM. In either case, X-ray photoelectron spectroscopy (XPS), grazing angle Fourier transform infrared spectroscopy (FTIR), and contact angle measurements were used to show the occurrence of the photocatalytic reduction. As further evidence for the presence of arylamine-terminated thiolate in the reduced SAM, these arylamine groups were successfully tagged with fluorescein isothiocyanate (FITC). The use of Qdot photocatalysts to functionalize surfaces may lead to a means to pattern surfaces at the nanoscale.

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Identification of a Role for an Azide-Sensitive Factor in the Thylakoid Transport of the 17-Kilodalton Subunit of the Photosynthetic Oxygen-Evolving Complex

We have examined the transport of the precursor of the 17-kD subunit of the photosynthetic O2-evolving complex (OE17) in intact chloroplasts in the presence of inhibitors that block two protein-translocation pathways in the thylakoid membrane. This precursor uses the transmembrane pH gradient-dependent pathway into the thylakoid lumen, and its transport across the thylakoid membrane is thought to be independent of ATP and the chloroplast SecA homolog, cpSecA. We unexpectedly found that azide, widely considered to be an inhibitor of cpSecA, had a profound effect on the targeting of the photosynthetic OE17 to the thylakoid lumen. By itself, azide caused a significant fraction of mature OE17 to accumulate in the stroma of intact chloroplasts. When added in conjunction with the protonophore nigericin, azide caused the maturation of a fraction of the stromal intermediate form of OE17, and this mature protein was found only in the stroma. Our data suggest that OE17 may use the sec-dependent pathway, especially when the transmembrane pH gradient-dependent pathway is inhibited. Under certain conditions, OE17 may be inserted across the thylakoid membrane far enough to allow removal of the transit peptide, but then may slip back out of the translocation machinery into the stromal compartment.

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Effect of vanadate, molybdate, and azide on membrane-associated ATPase and soluble phosphatase activities of corn roots.

The effects of vanadate, molybdate, and azide on ATP phosphohydrolase (ATPase) and acid phosphatase activities of plasma membrane, mitochondrial, and soluble supernatant fractions from corn (Zea mays L. WF9 x MO17) roots were investigated. Azide (0.1-10 millimolar) was a selective inhibitor of pH 9.0-ATPase activity of the mitochondrial fraction, while molybdate (0.01-1.0 millimolar) was a relatively selective inhibitor of acid phosphatase activity in the supernatant fraction. The pH 6.4-ATPase activity of the plasma membrane fraction was inhibited by vanadate (10-500 micromolar), but vanadate, at similar concentrations, also inhibited acid phosphatase activity. This result was confirmed for oat (Avena sativa L.) root and coleoptile tissues. While vanadate does not appear to be a selective inhibitor, it can be used in combination with molybdate and azide to distinguish the plasma membrane ATPase from mitochondrial ATPase or supernatant acid phosphatase.Vanadate appeared to be a noncompetitive inhibitor of the plasma membrane ATPase, and its effectiveness was increased by K(+). K(+)-stimulated ATPase activity was inhibited by 50% at about 21 micromolar vanadate. The rate of K(+) transport in excised corn root segments was inhibited by 66% by 500 micromolar vanadate.

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Phase Shift in the Potassium Uptake Rhythm of the Duckweed Lemna gibba G3 Caused by an Azide Pulse.

A 6-hour application (6-hour pulse) of 1 millimolar azide significantly changed the phase of the potassium uptake rhythm of Lemna gibba G3. The phase response curve obtained was type 0 and very similar to that caused by a 6-hour pulse of low temperature (5 degrees C) or darkness. The magnitude of the phase shift and the type of the phase response curve depended on the concentration of azide. However, 6-hour pulses of 3 millimolar cyanide or 10 micromolar (3-(3,4-dichlorophenyl)-1,1-dimethylurea) failed to shift the phase of the rhythm, while these pulses lowered the rate of carbon dioxide uptake or release. Azide, even at 3 micromolar, selectively reduced the amplitude of the rhythm without inhibiting the mean level of potassium uptake.

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Quenching of singlet molecular oxygen (1O2) by azide anion in solvent mixtures.

The azide ion is a strong physical quencher of singlet molecular oxygen (1O2) and is frequently employed to show involvement of 1O2 in oxidation processes. Rate constants (k(q)) for the quenching of 1O2 by azide are routinely used as standards to calculate k(q) values for quenching by other substrates. We have measured k(q) for azide in solvent mixtures containing deuterium oxide (D2O), acetonitrile (MeCN), 1,4-dioxane, ethanol (EtOH), propylene carbonate (PC), or ethylene carbonate (EC), mixtures commonly used for many experimental studies. The rate constants were calculated directly from 1O2 phosphorescence lifetimes observed after laser pulse excitation of rose bengal (RB), used to generate 1O2. In aqueous mixtures with MeCN and carbonates, the rate constant increased nonlinearly with increasing volume of organic solvent in the mixtures. k(q) was 4.78 x 10(8) M(-1) s(-1) in D2O and increased to 26.7 x 10(8) and 27.7 x 10(8) M(-1) s(-1) in 96% MeCN and 97.7% EC/PC, respectively. However, in EtOH/D2O mixtures, k(q) decreased with increasing alcohol concentration. This shows that a higher solvent polarity increases the quenching efficiency, which is unexpectedly decreased by the proticity of aqueous and alcohol solvent mixtures. The rate constant values increased with increasing temperature, yielding a quenching activation energy of 11.3 kJ mol(-1) in D2O. Our results show that rate constants in most solvent mixtures cannot be derived reliably from k(q) values measured in pure solvents by using a simple additivity rule. We have measured the rate constants with high accuracy, and they may serve as a reliable reference to calculate unknown k(q) values.

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Growth inhibitory effect of sodium azide in chemosensitivity assays.

In vitro chemosensitivity assays based on colony counting are plagued by persistent incidence of false-negative results. To avoid serious predictive errors, some investigators have utilized positive controls (known toxic compounds) as a quality control measure. Sodium azide (NaN3) at 6 mg/ml failed to inhibit colony formation in 17/35 (49%) assays; while in the thymidine incorporation assay, sodium azide was effective in inhibiting 124/131 (95%) specimens. Positive control substances for use in chemosensitivity assays must be carefully selected to insure accurate results.

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Infecundity and dominant lethal mutations induced in Musca domestica L. by sodium azide (NaN3).

Results of our study suggest that sodium azide is effective in the induction of sterility and dominant lethal mutations in both sexes of M. domestica L. When treated males were crossed with nontreated females, 100% dominant lethal mutations and 72.3% infecundity were found, whereas in the crosses of nontreated males and treated females, 82.5% dominant lethal mutations and 33.1% infecundity were found. This showed that males are more sensitive to sodium azide than females.

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Cloning of the E. coli O-acetylserine sulfhydrylase gene: ability of the clone to produce a mutagenic product from azide and O-acetylserine.

The gene coding for O-acetylserine sulfhydrylase (OASS) from E. coli K12 was cloned into the vector pBR322 plasmid and expressed in a cysk mutant strain of E. coli that is deficient in O-acetylserine sulfhydrylase (OASS-). The clone containing the OASS gene was selected by using tetracycline-ammonium bismuth citrate medium. Retransformation of the hybrid plasmid into competent cysk mutant cells resulted in the recovery of a clone containing normal levels of O-acetylserine sulfhydrylase. Negative selection of retransformed cysk cells on 1,2,4-triazole plates resulted in the complete inhibition of growth indicating the presence of a functional OASS gene. The ability of the new clone to convert azide to its mutagenic metabolite was tested. Cultures of the clone cells containing significant levels of OASS activity were able to produce a mutagenic product from azide and O-acetylserine as tested on Salmonella typhimurium TA1530. This cloning method could be applied also to clone the same gene from eukaryotic sources.

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