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Changes in soil microbial community structure associated with two types of genetically engineered plants analyzing by PLFA.

With the rapid expansion of GEPs(genetically engineered plants), people are more and more concerned about the ecological risks brought by their release. Assessing the effect of GEPs on soil microbial ecology is indispensable to study their ecological risks. In our study, the phospholipids fatty acid ( PLFA) method was used to analyze the microbial community of soil samples collected from fields with two types of GEPs-Bt transgenic corn and PVY ( potato virus Y) cell protein gene transgenic potato. The principal components analysis (PCA) showed all controls were on the right of related GEPs samples along the PC1 (the first principal component) axis, which means a decrease of fungi in soils with genetically engineered crop since most of PLFAs that are strongly positively correlated with PC1 represent fungi. For samples collected from Bt transgenic cornfield, the ratios of gram-positive to gram-negative bacteria were less than those of controls. For samples of transgenic potato field, these ratios were lower than those of controls when soils were collected from deep layer (20-40 cm), but were higher when soils collected from surface layer(0-20 cm). For soils collected from 0-20 cm, the ratios of fungi to bacteria for all GEPs samples were at the same level. So were such rations for all controls. Changes of soil microbial community in two types of GEPs fields were detected in our study, but the causes and more information still needs further study.

Bacterial Physiological Phenomena↗

[Comprehensive evaluation and selection of urban eco-engineering virescent trees in Shenyang City].

Urban virescence eco-engineering is the core of urban eco-environmental construction, which can promote urban sustainable development. In urban virescence eco-engineering, the comprehensive evaluation of ecological adapt-ability and ecological effect of urban plants is the scientific basis of rational application and selection of urban garden plants. The ecological effect and integrative functions of urban virescence eco-engineering depend upon the selection and layout of garden plants. Using the methods of garden expert consultation and evaluation, this paper established systematically integrative evaluation and application indices of virescence plants in Shenyang City, from the aspects of ecological adaptability, ecological effect, beautification effect, resistance to plant diseases and insect pests, anti-pollution and economic results. According to garden experts evaluation and location of Shenyang, 200 sorts of virescence trees were evaluated and classified on the basis of the comprehensive evaluation system of virescence trees, and using cold resistance, drought resistance, barren resistance, plant diseases and insect pests resistance, anti-pollution, ornamental quality and ecological effects as the indexes. The results showed that the number of first rank trees was 58, the second was 93, methods of third was 38, and the fourth was 11, ranked by integrative performance.

China↗

Machine learning in soil classification.

In a number of engineering problems, e.g. in geotechnics, petroleum engineering, etc. intervals of measured series data (signals) are to be attributed a class maintaining the constraint of contiguity and standard classification methods could be inadequate. Classification in this case needs involvement of an expert who observes the magnitude and trends of the signals in addition to any a priori information that might be available. In this paper, an approach for automating this classification procedure is presented. Firstly, a segmentation algorithm is developed and applied to segment the measured signals. Secondly, the salient features of these segments are extracted using boundary energy method. Based on the measured data and extracted features to assign classes to the segments classifiers are built; they employ Decision Trees, ANN and Support Vector Machines. The methodology was tested in classifying sub-surface soil using measured data from Cone Penetration Testing and satisfactory results were obtained.

Algorithms↗

Scrambled eggs: mechanical forces as ecological factors in early development.

Many ecological interactions involve, at some level, mechanical forces and the movements or structural deformations they produce. Although the most familiar examples involve the functional morphology of adult structures, all life history stages (not just the adults) are subject to the laws of physics. Moreover, the success of every lineage depends on the success of every life history stage (again, not just the adults). Therefore, insights gained by using mechanical engineering principles and techniques to study ecological interactions between gametes, embryos, larvae, and their environment are essential to a well-rounded understanding of development, ecology, and evolution. Here I draw on examples from the literature and my own research to illustrate ways in which mechanical forces in the environment shape development. These include mechanical forces acting as selective factors (e.g., when coral gamete size and shape interact with turbulent water flow to determine fertilization success) and as developmental cues (e.g., when plant growth responds to gravity or bone growth responds to mechanical loading). I also examine the opposite cause-and-effect relationship by considering examples in which the development of organisms impacts ecologically relevant mechanical forces. Finally, I discuss the potential for ecological pattern formation as a result of feedback loops created by such bidirectional interactions between developmental processes and mechanical forces in the environment.

Animals↗

[Combined construction of rainwater catchment techniques with methane pool and greenhouse].

A combined structure of rainwater catchment, methane pool and reformed greenhouse was constructed to improve water use efficiency. The results showed that the combination of rainwater catchment, reserving techniques and water saving measures was efficient to resolve the problem of water deficiency in the semi-arid region with precipitation of 250-550 mm. The combined structure of water catchment engineering, greenhouse and methane pool redistributed light, temperature, water and heat to develop higher benefits economic crops, and improved water use efficiency, which made it possible to develop high yield, and best quality agriculture in this region. Through optimizing the ecological factor in greenhouse, the water use was reduced by 50%-70%, and the soil temperature and night temperature were raised. This combined construction also improved productivity in greenhouse, and efficiently controlled plant diseases and insect pests. Methane pool provided CO2 and part energy source. The shady area back of the greenhouse was exploited by growing shady crops and epiphyte, which contributed to exchange energy and CO2 between light and shady house. This model could be used as water catchment agricultural development model in the region, and some other new approaches to water catchment agriculture in semi-arid region were discussed in this paper.

Agriculture↗

Constructed wetlands in UK urban surface drainage systems.

This paper presents the outcome of an inventory of planted wetland systems in the UK which are classified according to land use type and are all examples of sustainable drainage systems. The introduction of constructed wetlands to treat surface runoff essentially followed a 1997 Environment Agency for England and Wales report advocating the use of "soft engineered" facilities including wetlands in the context of sustainable development and Agenda 21. Subsequently published reports by the UK Construction Industry Research and Information Association (CIRIA) have promoted the potential benefits to both developer and the community of adopting constructed wetlands and other vegetated systems as a sustainable drainage approach. In addition, the UK Environment Agency and Highways Agency (HA) have recently published their own design criteria and requirements for vegetative control and treatment of road runoff. A case study of the design and performance of a constructed wetland system for the treatment of road runoff is discussed. The performance of these systems will be assessed in terms of their design criteria, runoff loadings as well as vegetation and structure maintenance procedures. The differing design approaches in guidance documents published in the UK by the Environment Agency, CIRIA and HA will also be evaluated.

Data Collection↗

Comparative treatment of dye-rich wastewater in engineered wetland systems (EWSs) vegetated with different plants.

In Dar es Salaam City there are more than a thousand tie-and-dye (TAD) small-scale industries (SSIs) that discharge dye-rich wastewater indiscriminately with resultant water pollution. Due to the decentralised nature of the TAD SSIs, coupled with financial constraints facing their operators, control of their pollution needs a simple cost-effective waste treatment technology. Engineered wetland systems (EWSs) constitute such a technology. A pilot scale EWS was evaluated with respect to its effectiveness in treating dye-rich wastewater. The role of wetland plants was assessed through comparing treatment performance efficiencies between an unplanted and vegetated EWS beds. On the whole, it has been demonstrated that the EWS has the potential to effectively treat dye-rich wastewater. Colour, which is the most apparent problem issue with textile wastewater, was reduced by 72-77%. COD was reduced by 68-73%, while sulphate was reduced by 53-59%. The proportionately high COD removal suggests the reduction in colour was accompanied by almost complete degradation of dyes and daughter products. The overall treatment efficiency of the vegetated units was more than twice as high as that of the unplanted bed. On average, the bed vegetated with coco yam plants performed better (7.6%) than the one planted with cattail plants.

Bioreactors↗

Wastewater treatment by algal turf scrubbing.

Algal turf scrubbing (ATS) is a novel wetland technology that has been designed and engineered to promote natural wastewater treatment processes. Algal turf scrubbing improves water quality by passing a shallow stream of wastewater over the surface of a gently sloped floway. The floway is colonised by a natural heterogeneous assemblage of periphyton consisting of cyanobacteria, filamentous algae and epiphytic diatoms together with aerobic bacteria and fungi. Algal photosynthesis provides oxygen for aerobic breakdown of wastewater by heterotrophic bacteria. Pollutants are extracted from the wastewater by several processes including assimilation, adsorption, filtration and precipitation. The algal turf is harvested periodically to remove the accumulated periphyton biomass and associated pollutants from the system. This paper will present results from a demonstration ATS facility in Patterson, California which was used to polish secondarily treated wastewater. The design and operational factors that influence the treatment performance of ATS systems is discussed. Results indicate the potential of the ATS for nutrient removal from secondarily treated wastewater and agricultural drainage waters.

Adsorption↗

Interaction Between Scientists and Nonscientists in Community-Based Watershed Management: Emergence of the Concept of Stream Naturalization.

/ Watershed management, although dependent on science and engineering, is first and foremost a social process. Given the current emphasis on community-based approaches to environmental decision making, scientists must, more than ever before, understand, appreciate, respect, and immerse themselves within local social contexts. Only by doing so will they be able to ensure that their opinions and information are fairly and meaningfully considered by nonscientists.The authors' personal experience in watershed planning and decision making in the agricultural Midwest is described to illustrate how: (1) formalization of the process of community-based management is not sufficient to guarantee that local people will meaningfully consider scientific information and opinion when making decisions about watersheds, and (2) genuine social interaction between scientists and nonscientists requires a considerable investment of time and energy on the part of the scientist to develop personal relationships with nonscientists based on trust and mutual exchange of information. This experience provides the basis for developing a general conceptual model of the interaction between scientists and nonscientists in community-based watershed management in the agricultural Midwest.An important aspect of integrating science effectively into community-based decision making is the need to revise existing concepts to accommodate place-based contexts. Stream naturalization is introduced as an alternative to stream restoration and rehabilitation, which are viewed as inappropriate management strategies in human-dominated environments. Stream naturalization seeks to establish sustainable, morphologically and hydraulically varied, yet dynamically stable fluvial systems that are capable of supporting healthy, biologically diverse aquatic ecosystems. This general goal is consistent with the types of stream-management practices emerging from community-based decision making in human-dominated, agricultural landscapes. Further research on the linkages between geomorphological and ecological dynamics of human-modified agricultural streams over multiple spatial and temporal scales is needed to provide a sound scientific framework for stream naturalization.KEY WORDS: Community-based decision making; Watershed management; Stream naturalizationhttp://link.springer-ny.com/link/service/journals/00267/bibs/24n3p297.html

Journal Article↗

Genetically modified Streptococcus mutans for the prevention of dental caries.

There are many examples of positive and negative interactions between different species of bacteria inhabiting the same ecosystem. This observation provides the basis for a novel approach to preventing microbial diseases called replacement therapy. In this approach, a harmless effector strain is permanently implanted in the host's microflora. Once established, the presence of the effector strain prevents the colonization or outgrowth of a particular pathogen. In the case of dental caries, replacement therapy has involved construction of an effector strain called BCS3-L1, which was derived from a clinical Streptococcus mutans isolate. Recombinant DNA technology was used to delete the gene encoding lactate dehydrogenase in BCS3-L1 making it entirely deficient in lactic acid production. This effector strain was also designed to produce elevated amounts of a novel peptide antibiotic called mutacin 1140 that gives it a strong selective advantage over most other strains of S. mutans. In laboratory and rodent model studies, BCS3-L1 was found to be genetically stable and to produce no apparent deleterious side effects during prolonged colonization. BCS3-L1 was significantly less cariogenic than wild-type S. mutans in gnotobiotic rats, and it did not contribute at all to the cariogenic potential of the indigenous flora of conventional Sprague-Dawley rats. And, its strong colonization properties indicated that a single application of the BCS3-L1 effector strain to human subjects should result in its permanent implantation and displacement over time of indigenous, disease-causing S. mutans strains. Thus, BCS3-L1 replacement therapy for the prevention of dental caries is an example of biofilm engineering that offers the potential for a highly efficient, cost effective augmentation of conventional prevention strategies. It is hoped that the eventual success of replacement therapy for the prevention of dental caries will stimulate the use of this approach in the prevention of other bacterial diseases.

Dental Caries↗

Risk concerns, land use, stewardship, and the Idaho National Engineering and Environmental Laboratory: attitudes of the Shoshone-Bannock and other American Indians.

This paper examines the attitudes and perceptions of 277 American Indians about hunting and fishing, risk, and future land use of the Idaho National Engineering and Environmental Laboratory (INEEL) in southeastern Idaho. Nearly half of our sample were Shoshone-Bannock tribal members living on the nearby Fort Hall Reservation, and half were American Indians from elsewhere in the western United States. We also interviewed an additional 44 White people. We examine the hypothesis that there are differences in environmental concerns and attitudes toward future land use at IN-EEL as a function of tribal affiliation (ethnicity), educational level, gender, and age. Such perceptions are important because of the existence of tribal treaties that govern the legal and cultural rights of the Shoshone-Bannock. Returning INEEL to the Shoshone-Bannock Tribes, hunting, fishing, camping, hiking, and a National Environmental Research Park ranked as the highest preferred future land uses, whereas continuing nuclear materials reprocessing and increasing the storage of nuclear wastes ranked as the lowest. There were tribal differences in land use preferences, with those of the Fort Hall Indians being more similar to those of the local Whites than to other American Indians. All groups ranked storage of nuclear material, storage of additional nuclear material, and spills and accidents as the most serious of a list of concerns provided about the site. Fort Hall Indians answered an open-ended question with concerns for population levels and migration routes of game animals and other wildlife, more than hunting and human health. The Shoshone-Bannock from Fort Hall showed an environmental sensitivity for the well-being of wildlife and the health of the ecosystem and were interested in long-term stewardship, in addition to 29 concern for human health.

Adult↗

Development of engineered natural organic sorbents for environmental applications. 1. Materials, approaches, and characterizations.

A technology for effecting diagenesis-like transformations in young natural organic matter (NOM) derived from common plant materials is described. Thirteen such materials were processed in liquid-phase water at superheated temperature/pressure conditions. In all cases significant changes in the physical and chemical properties of the raw NOM source materials occurred. Their carbon and nitrogen contents increased, their hydrogen and oxygen contents decreased, their surface areas initially increased dramatically, then sharply decreased, and their bulk densities and equilibrated aqueous phase pH values increased as functions of increasing temperature and pressure. Spectroscopic analyses confirmed marked changes in the molecular structures of the NOMs resulting from superheated water processing; e.g., fractions of alkyl and aromatic carbons increased while oxygen-associated functional organic carbon decreased. These changes in elemental composition and molecular structure indicate that the organic fractions of the raw materials became less polar, increasingly condensed, and more aromatic as a result of the reactions induced by superheated water processing, the changes correlating directly with the temperature/ pressure conditions employed. The results presented confirm that the long-term biogeochemical processes that in nature effect geologically slow advances in the chemical states of organic carbon can be simulated and markedly accelerated by superheated water processing.

Ecosystem↗

Ecophysiology and niche differentiation of Nitrospira-like bacteria, the key nitrite oxidizers in wastewater treatment plants.

Nitrite-oxidizing bacteria of the genus Nitrospira are key nitrifiers in wastewater treatment plants. Pure cultures of these organisms are unavailable, but cultivation-independent molecular methods make it possible to detect Nitrospira-like bacteria in environmental samples and to investigate their ecophysiology. Comprehensive screening of natural and engineered habitats and of public databases for 16S rRNA sequences of Nitrospira-like bacteria revealed a surprisingly high biodiversity in the genus Nitrospira, which comprises at least four phylogenetic sublineages. All Nitrospira-like bacteria detected in wastewater treatment plants belonged to the sublineages I and II. Subsequently, the population dynamics of different Nitrospira-like bacteria were monitored, by quantitative fluorescence in situ hybridization with rRNA-targeted probes, confocal laser scanning microscopy and digital image analysis, during incubation of nitrifying activated sludge in media containing different nitrite concentrations. These experiments showed that Nitrospira-like bacteria, which were affiliated with the phylogenetic sublineages I or II of the genus Nitrospira, responded differently to nitrite concentration shifts. Previously unknown properties of Nitrospira-like bacteria were discovered in the course of an environmental genomics project. Implications of the obtained results for fundamental understanding of the microbial ecology of nitrite oxidizers as well as for future improvement of nutrient removal in wastewater treatment plants are discussed.

Bacteria↗

[Genetically modified organisms--problems and legislation].

Genetically modified organisms are defined by law as entities capable of replication and/or transmission of hereditary material that had been altered by the insertion or removal of a DNA fragment. By the EU legal regulation as well as by the Czech law, such organisms are considered risky whereas other products of breeding, though obtained by, e.g., induced mutagenesis, are claimed as safe. Organisms transferred from other ecosystems are also considered safe. The Czech law on the use of genetically modified organisms is based on registers of users and organisms for specific use. Application for the registration that is valid as an approval should be submitted to the Ministry of Environment. The applicant is obliged to present the risk assessment of the particular use of genetically modified organisms. Genetically modified organisms are connected with certain risk to ecology, however health risks are brought about almost exclusively by microorganisms. Modified organisms used for food production are thoroughly tested for substantial equivalency with standard crops and with respect to health parameters of the protein(s) newly introduced due to genetic modification. Detail tests as well as their cost are close to the testing of new drugs. European as well as Czech rules for food labelling are motivated by the psychology of consumers rather than by health impact. They result to absurdities but do not meet the task of public psychology. This is why the EU authorities are looking for measures to change the present situation that other wise would bring Europe well behind the developed countries.

Czech Republic↗

Removal of enteric bacteria in constructed treatment wetlands with emergent macrophytes: a review.

Domestic and municipal sewage contains various pathogenic or potentially pathogenic microorganisms which, depending on species concentration, pose a potential risk to human health and whose presence must therefore be reduced in the course of wastewater treatment. The removal of microbiological pollution is seldom a primary target for constructed treatment wetlands (CWs). However, wetlands are known to act as excellent biofilters through a complex of physical, chemical and biological factors which all participate in the reduction of the number of bacteria. Measurement of human pathogenic organisms in untreated and treated wastewater is expensive and technically challenging. Consequently, environmental engineers have sought indicator organisms that are (1) easy to monitor and (2) correlate with population of pathogenic organisms. The most frequently used indicators are total coliforms, fecal coliforms, fecal streptococci and Escherichia coli. The literature survey of 60 constructed wetlands with emergent vegetation around the world revealed that removal of total and fecal coliforms in constructed wetlands with emergent macrophytes is high, usually 95 to > 99% while removal of fecal streptococci is lower, usually 80-95%. Because bacterial removal efficiency is a function of inflow bacteria number, the high removal effects are achieved for untreated or mechanically pretreated wastewater. Therefore, the outflow numbers of bacteria are more important. For TC and FC the outflow concentrations are usually in the range of 10(2) to 10(5) CFU/ 100 ml while for FS the range is between 10(2) and 10(4) CFU/ 100 ml. Results from operating systems suggest that enteric microbe removal efficiency in CWs with emergent macrophytes is primarily influenced by hydraulic loading rate (HLR) and the resultant hydraulic residence time (HRT) and the presence of vegetation. Removal of enteric bacteria follows approximately a first-order relationship.

Biodegradation, Environmental↗

Interactions of earthworms with Atrazine-degrading bacteria in an agricultural soil.

In the last 10 years, accelerated mineralization of Atrazine (2-chloro-ethylamino-6-isopropylamino-s-triazine) has been evidenced in agricultural soils repeatedly treated with this herbicide. Here, we report on the interaction between earthworms, considered as soil engineers, and the Atrazine-degrading community. The impact of earthworm macrofauna on Atrazine mineralization was assessed in representative soil microsites of earthworm activities (gut contents, casts, burrow linings). Soil with or without earthworms, namely the anecic species Lumbricus terrestris and the endogenic species Aporrectodea caliginosa, was either inoculated or not inoculated with Pseudomonas sp. ADP, an Atrazine-degrading strain, and was either treated or not treated with Atrazine. The structure of the bacterial community, the Atrazine-degrading activity and the abundance of atzA, B and C sequences in soil microsites were investigated. Atrazine mineralization was found to be reduced in representative soil microsites of earthworm activities. Earthworms significantly affected the structure of soil bacterial communities. They also reduced the size of the inoculated population of Pseudomonas sp. ADP, thereby contributing to the diminution of the Atrazine-degrading genetic potential in representative soil microsites of earthworm activities. This study illustrates the regulation produced by the earthworms on functional bacterial communities involved in the fate of organic pollutants in soils.

Amidohydrolases↗

The legacy of Biosphere 2 for the study of biospherics and closed ecological systems.

The unprecedented challenges of creating Biosphere 2, the world's first laboratory for biospherics, the study of global ecology and long-term closed ecological system dynamics, led to breakthrough developments in many fields, and a deeper understanding of the opportunities and difficulties of material closure. This paper will review accomplishments and challenges, citing some of the key research findings and publications that have resulted from the experiments in Biosphere 2. Engineering accomplishments included development of a technique for variable volume to deal with pressure differences between the facility and outside environment, developing methods of atmospheric leak detection and sealing, while achieving new standards of closure, with an annual atmospheric leakrate of less than 10%, or less than 300 ppm per day. This degree of closure permitted detailed tracking of carbon dioxide, oxygen, and trace gases such as nitrous oxide and ethylene over the seasonal variability of two years. Full closure also necessitated developing new approaches and technologies for complete air, water, and wastewater recycle and reuse within the facility. The development of a soil-based highly productive agricultural system was a first in closed ecological systems, and much was learned about managing a wide variety of crops using non-chemical means of pest and disease control. Closed ecological systems have different temporal biogeochemical cycling and ranges of atmospheric components because of their smaller reservoirs of air, water and soil, and higher concentration of biomass, and Biosphere 2 provided detailed examination and modeling of these accelerated cycles over a period of closure which measured in years. Medical research inside Biosphere 2 included the effects on humans of lowered oxygen: the discovery that human productivity can be maintained with good health with lowered atmospheric oxygen levels could lead to major economies on the design of space stations and planetary/lunar settlements. The improved health resulting from the calorie-restricted but nutrient dense Biosphere 2 diet was the first such scientifically controlled experiment with humans. The success of Biosphere 2 in creating a diversity of terrestrial and marine environments, from rainforest to coral reef, allowed detailed studies with comprehensive measurements such that the dynamics of these complex biomic systems are now better understood. The coral reef ecosystem, the largest artificial reef ever built, catalyzed methods of study now being applied to planetary coral reef systems. Restoration ecology advanced through the creation and study of the dynamics of adaptation and self-organization of the biomes in Biosphere 2. The international interest that Biosphere 2 generated has given new impetus to the public recognition of the sciences of biospheres (biospherics), biomes and closed ecological life systems. The facility, although no longer a materially-closed ecological system, is being used as an educational facility by Columbia University as an introduction to the study of the biosphere and complex system ecology and for carbon dioxide impacts utilizing the complex ecosystems created in Biosphere '. The many lessons learned from Biosphere 2 are being used by its key team of creators in their design and operation of a laboratory-sized closed ecological system, the Laboratory Biosphere, in operation as of March 2002, and for the design of a Mars on Earth(TM) prototype life support system for manned missions to Mars and Mars surface habitats. Biosphere 2 is an important foundation for future advances in biospherics and closed ecological system research.

Agriculture↗

[Soft-ridged bench terrace design in hilly loess region].

Reconfiguration of hillside field into terrace is regarded as one of the key techniques for water and soil conservation in mountainous regions. On slopes exceeding 30 degrees, the traditional techniques of terracing are difficult to apply as risers (i.e., backslopes), and if not reinforced, are so abrupt and easy to collapse under gravity alone, thus damaging the terrace. To improve the reconfiguration of hillside field into terrace, holistic techniques of soft-ridged bench terrace engineering, including revegetation, with trees and planting grasses on riser slopes, were tested between 1997 and 2001 in Xiabiangou watershed of Yan' an, Shaanxi Province. A "working with Nature" engineering approach, riser slopes of 45 degrees, similar to the pre-existing slope of 35 degrees, was employed to radically reduce gravity-erosion. Based on the concepts of biodiversity and the principles of landscape ecology, terrace benches, bunds, and risers were planted with trees, shrubs, forage grasses, and crops, serving to generate a diverse array of plants, a semi-forested area, and to stabilize terrace bunds. Soft-ridged bench terrace made it possible to significantly reduce hazards arising from gravity erosion, and reduce the costs of individual bench construction and maintenance by 24.9% and 55.5% of the costs under traditional techniques, respectively. Such a construction allowed an enrichment and concentration of nutrients in the soils of terrace bunds, providing an ideal environment for a range of plants to grow and develop. The terrace riser could be planted with drought-resistant plants ranging from forage grasses to trees, and this riser vegetation would turn the exposed bunds and risers existing under traditional techniques into plant-covered belts, great green ribbons decorating farmland and contributing to the enhancement of the landscape biology.

Agriculture↗