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PubMed2026

Novel Insights into Metagenomic-Assembled Genomes from Layer Chicken Housing Environment.

Culture-independent techniques are playing a major role in exploring unique and novel microbial communities from complex ecosystems, leading to an outstanding impact on our basic understanding of the tree of life. Microbial communities are not extensively studied in layer chicken housing environments, particularly from the point of view of taxa carrying antimicrobial resistance genes, virulence genes and their functional potential. This study aimed to extract metagenomic-assembled genomes (MAGs) from the Illumina short-reads shotgun metagenomics sequenced data that originated from an Alberta poultry barn environment and then to study host tracking of antimicrobial resistance genes (ARGs) and the roles of genes involved in functions related to ammonia production, short-chain fatty acid (SCFA)-related pathways, sulfur metabolism, methane emission, stress and disinfectant-related pathways. A total of 251 high-quality MAGs were extracted, including 249 bacterial and two archaeal genomes from sequencing data of 30 metagenomic sequencing samples comprising 15 air and 15 manure samples collected from 15-layer farms. Interestingly 22 bacterial MAGs were not classified to species levels using GTDB-based classification. ARGs were mainly harbored by the genera Staphylococcus, Alistepes, Romboutsia, and Enterococcus. Bacteroides is a main taxon carrying ARGs in air samples. Ammonia production-related genes were mainly tracked in Staphylococcus, Ruminococcus and Corynebacterium genera. The assimilatory sulfate reduction genes responsible for sulfur metabolism and hydrogenase-related genes responsible for hydrogen cycling were traced from Staphylococcus originated from both air and manure. The current study provides characterizations of MAGs from a poultry housing environment by linking microbial taxa with virulence, resistance, and metabolic functions. The findings emphasize the role of microbiota in shaping gas emissions and AMR, with implications for poultry health and worker's safety and the ultimate aim of sustainable poultry production.

Animals↗

PubMedDate not supplied

[Effect of methanosarcina on the growth of primary anaerobes].

The effect of Methanosarcina vacuolata on the mixed celluloytic population and on pure cultures of anaerobic bacteria was studied. In the pasteurized enrichment culture decomposing cellulose but producing no methane, the biomass of primary anaerobes increased at a higher rate when Methanosarcina was introduced; the rate of cellulose hydrolysis did not change. Methanosarcina stimulated also the growth of Escherichia intermedia and Ruminococcus albus on a medium containing glucose and cellobiose. The growth of combined cultures with the production of methane was possible only on a medium with a low content of carbohydrates since an increase in the concentration of glucose inhibited the growth of Methanosarcina.

Animals↗

PubMed1994

Rapid diagnosis of anaerobic gram-positive cocci by salt tolerance.

The maximum salt tolerance was 2.5% in cases of Peptostreptococcus anaerobius and Peptococcus prevotii, 3% in Ruminococcus albus, 4% in Acidaminococcus fermentans, Peptococcus niger and Megasphaera elsdenii and 5% in Peptococcus magnus. The biochemical tests being largely inactive and time consuming the findings of salt tolerance if combined with those of morphological data provide clue to the rapid identification of Gram-positive anaerobic cocci.

Bacteriological Techniques↗

PubMed1995

Non-sporing anaerobes in certain surgical group of patients.

The magnitude of non-sparing anaerobic (NSA) infections has been defined in the postoperative wounds on colorectum in children (57.1%), general surgery (0%), abdominoperineal and uterocervical operations (11-45%) in gynaecologic and obstetrical cases and perforative peritonitis (25.8-32.3%). Children below the 6 months age group bear less risk of acquiring NSA infection. Under certain situations, metronidazole combats NSA infections in a better way than other antibacterials. The bacteriology of NSA infections has been probed at the species level in the gynaecologic and obstetrical patients. The species of normal cervix (44.6%) are represented in wounds involving abdominal wall (11%), perineum (22.8%) and uterocervix (45.6%) to suggest endogenous infection. Out of the 22 species of NSA isolated, Peptostreptococcus anaerobius, Acidaminococcus fermentans and Peptococcus prevotii are the commonest. Others were Peptococcus niger, Gaffkya anaerobia, Lactobacillus bulgaricus, Actinomyces bovis, Bacteroides oralis, Fusobacterium gonidiaformans and the different species of peptococcus, peptostreptococcus, eubacterium, propionibacterium and fusobacterium. The weight of evidence indicated a pathogenic role of Peptostreptococcus anaerobius and Ruminococcus flavefaciens, in view of their heavy growth. The umbrella of antibacterials reduced Gram-positive anaerobic cocci from 40% to 16%. The facultative anaerobes Staph aureus, Staph epidermidis, Kl pneumoniae and proteus appeared as the exogenous agents of nosocomial infections.

Adolescent↗