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Results for “Evolution of cooperation”

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PubMed1993

Evolutionary conservation of Xenopus laevis mitogen-activated protein kinase activation and function.

Saccharomyces cerevisiae possesses at least four mitogen-activated protein (MAP) kinase family members, encoded by the FUS3, KSS1, HOG1, and MPK1 genes, that participate in three distinct signaling pathways. We have tested whether a MAP kinase from Xenopus laevis (Xp42) can function in budding yeast, by expressing wild-type and mutant forms of Xp42 in different strains of S. cerevisiae. In Xenopus cells, Xp42 is phosphorylated on threonine188 and tyrosine190 when activated by a MAP kinase kinase (MAPKK). In S. cerevisiae, Xp42 is constitutively phosphorylated on tyrosine190. Since a kinase-inactive mutant of Xp42 is also phosphorylated, this phosphorylation is presumably due to activation by an endogenous MAPKK. Xp42 phosphorylation and kinase activity are dependent on yeast Bck1p, a putative MAPKK kinase (MAPKKK) and indirect upstream activator of Mpk1p. The loss of either Ste7p or Pbs2p, the upstream activators of Fus3p, Kss1p, and Hog1p, does not decrease the phosphorylation stoichiometry of Xp42. We also show that expression of Xenopus MAP kinase permits an mpk1::TRP1 deletion strain to grow at 37 degrees C. We conclude that S. cerevisiae and X. laevis possess evolutionarily conserved cascades, where biochemical activation and substrate specificity of MAP kinase have been maintained.

Animals↗

PubMed2006

The evolution of norms.

We develop a two-level selection model in the framework of evolutionary game theory, in which fitness selection at different levels is related to different games. We consider an archipelago of communities, such that selection operates at an individual level inside each community and at a group level whenever evolution of communities is at stake. We apply this model to the evolution of social norms, an open problem of ubiquitous importance in social science. Extensive statistical analysis of our results lead to the emergence of one common social norm, of which the evolutionary outcomes in different communities are simple by-products. This social norm induces reputation-based cooperative behavior, and reflects the evolutionary propensity to promote simple, unambiguous norms, in which forgiveness and repent are welcome, while punishment is implacable.

Biological Evolution↗

PubMed1997

Modelling the evolution of human trail systems.

Many human social phenomena, such as cooperation, the growth of settlements, traffic dynamics and pedestrian movement, appear to be accessible to mathematical descriptions that invoke self-organization. Here we develop a model of pedestrian motion to explore the evolution of trails in urban green spaces such as parks. Our aim is to address such questions as what the topological structures of these trail systems are, and whether optimal path systems can be predicted for urban planning. We use an 'active walker' model that takes into account pedestrian motion and orientation and the concomitant feedbacks with the surrounding environment. Such models have previously been applied to the study of complex structure formation in physical, chemical and biological systems. We find that our model is able to reproduce many of the observed large-scale spatial features of trail systems.

Behavior↗

PubMed2006

Structural divergence between the human and chimpanzee genomes.

The structural microheterogeneity evident between the human and chimpanzee genomes is quite considerable and includes inversions and duplications as well as deletions, ranging in size from a few base-pairs up to several megabases (Mb). Insertions and deletions have together given rise to at least 150 Mb of genomic DNA sequence that is either present or absent in humans as compared to chimpanzees. Such regions often contain paralogous sequences and members of multigene families thereby ensuring that the human and chimpanzee genomes differ by a significant fraction of their gene content. There is as yet no evidence to suggest that the large chromosomal rearrangements which serve to distinguish the human and chimpanzee karyotypes have influenced either speciation or the evolution of lineage-specific traits. However, the myriad submicroscopic rearrangements in both genomes, particularly those involving copy number variation, are unlikely to represent exclusively neutral changes and hence promise to facilitate the identification of genes that have been important for human-specific evolution.

Animals↗

PubMed1992

PCR derived cDNA clones for X-linked phosphoglycerate kinase-1 in a marsupial, the tammar wallaby (Macropus eugenii).

cDNA clones for the X-linked PGK-1 were obtained from a tammar wallaby liver by PCR and sequenced. The PGK-1 gene published here is the consensus sequence of those clones. The sequence represents an open reading frame of 1251 bp. Sequence comparisons to X-linked and autosomal sequences showed the greatest homology with the X-linked PGK-1 genes in eutherian species. This sequence opens the way for studying the paternal X inactivation phenomenon in marsupials and will assist in defining the time course of mammalian evolution.

Amino Acid Sequence↗

PubMed2000

Niche construction, biological evolution, and cultural change.

We propose a conceptual model that maps the causal pathways relating biological evolution to cultural change. It builds on conventional evolutionary theory by placing emphasis on the capacity of organisms to modify sources of natural selection in their environment (niche construction) and by broadening the evolutionary dynamic to incorporate ontogenetic and cultural processes. In this model, phenotypes have a much more active role in evolution than generally conceived. This sheds light on hominid evolution, on the evolution of culture, and on altruism and cooperation. Culture amplifies the capacity of human beings to modify sources of natural selection in their environments to the point where that capacity raises some new questions about the processes of human adaptation.

Adaptation, Physiological↗

PubMed1999

The continuous Prisoner's dilemma: II. Linear reactive strategies with noise.

We present a general model for the Continuous Prisoner's Dilemma and study the effect of errors. We find that cooperative strategies that can resist invasion by defectors are optimistic (make high initial offers), generous (always offer more cooperation than the partner did in the previous round) and uncompromising (offer full cooperation only if the partner does). A necessary condition for the emergence of cooperation in the continuous Prisoner's Dilemma with noise is b (1-p)>c, where b and c denote, respectively, the benefit and cost of cooperation, while p is the error rate. This relation can be reformulated as an error threshold: cooperation can only emerge if the probability of making a mistake is below a critical value. We note, however, that cooperation in the continuous Prisoner's Dilemma with noise does not seem to be evolutionarily stable: while it is possible to find cooperative strategies that resist invasion by defectors, such cooperators are generally invaded by more cooperative strategies which eventually yield to defectors. Thus, the long-term evolution of the continuous Prisoner's Dilemma is either characterized by unending cycles or by stable polymorphisms of cooperators and defectors.

Biological Evolution↗

PubMed1987

Thy-1 evolution.

Explore the source record for details and available documents.

Amino Acid Sequence↗

PubMed1996

Punctuated evolution caused by selection of rare beneficial mutations.

For more than two decades there has been intense debate over the hypothesis that most morphological evolution occurs during relatively brief episodes of rapid change that punctuate much longer periods of stasis. A clear and unambiguous case of punctuated evolution is presented for cell size in a population of Escherichia coli evolving for 3000 generations in a constant environment. The punctuation is caused by natural selection as rare, beneficial mutations sweep successively through the population. This experiment shows that the most elementary processes in population genetics can give rise to punctuated evolution dynamics.

Alleles↗

PubMed2006

Social evolution: kin preference in a social microbe.

Kin recognition helps cooperation to evolve in many animals, but it is uncertain whether microorganisms can also use it to focus altruistic behaviour on relatives. Here we show that the social amoeba Dictyostelium purpureum prefers to form groups with its own kin in situations where some individuals die to assist others. By directing altruism towards kin, D. purpureum should generally avoid the costs of chimaerism experienced by the related D. discoideum.

Altruism↗

PubMed2004

Mutual benefit can promote the evolution of preferential interactions and in this way can lead to the evolution of true altruism.

We analyse the evolution of the assortment of encounters through active choice of companions among individuals that interact cooperatively in a situation of mutual benefit. Using a simple mathematical model, we show that mutual benefit can favour the evolution of a preference to interact with individuals that are similar to themselves with respect to an arbitrary tag even when both the preference and the tag depend on two independent and unlinked genes. Two necessary requisites to obtain this result are: (i) a small population or a large subdivided metapulation and (ii) an asymmetry between partners in such a way that one of them (donor) proposes the cooperation and elects the partner, whereas the other (receiver) never rejects the offer. We also show that mutual benefit can be the starting point for the evolution of altruistic behaviours as long as there are preferential interactions. This requires that the tag used in the election of partners is the altruistic or selfish behaviour itself.

Alleles↗

PubMed2002

Type III secretion systems and the evolution of mutualistic endosymbiosis.

The view that parasites can develop cooperative symbiotic relationships with their hosts is both appealing and widely held; however, there is no molecular genetic evidence of such a transition. Here we demonstrate that a mutualistic bacterial endosymbiont of grain weevils maintains and expresses inv/spa genes encoding a type III secretion system homologous to that used for invasion by bacterial pathogens. Phylogenetic analyses indicate that inv/spa genes were present in presymbiotic ancestors of the weevil endosymbionts, occurring at least 50 million years ago. The function of inv/spa genes in maintaining symbiosis is demonstrated by the up-regulation of their expression under both in vivo and in vitro conditions that coincide with host cell invasion.

Adhesins, Bacterial↗

PubMed2006

A general model for the evolution of mutualisms.

The evolution of mutualisms presents a puzzle. Why does selection favour cooperation among species rather than cheaters that accept benefits but provide nothing in return? Here we present a general model that predicts three key factors will be important in mutualism evolution: (i) high benefit to cost ratio, (ii) high within-species relatedness and (iii) high between-species fidelity. These factors operate by moderating three types of feedback benefit from mutualism: cooperator association, partner-fidelity feedback and partner choice. In defining the relationship between these processes, our model also allows an assessment of their relative importance. Importantly, the model suggests that phenotypic feedbacks (partner-fidelity feedback, partner choice) are a more important explanation for between-species cooperation than the development of genetic correlations among species (cooperator association). We explain the relationship of our model to existing theories and discuss the empirical evidence for our predictions.

Biological Evolution↗

PubMed1994

Stereodynamic properties of the cooperative homodimeric Scapharca inaequivalvis hemoglobin studied through optical absorption spectroscopy and ligand rebinding kinetics.

The study of the thermal evolution of the Soret band in heme proteins has proved to be a useful tool to understand their stereodynamic properties; moreover, it enables one to relate protein matrix fluctuations and functional behavior when carried out in combination with kinetic experiments on carbon monoxide rebinding after flash photolysis. In this work, we report the thermal evolution of the Soret band of deoxy, carbonmonoxy, and nitric oxide derivatives of the cooperative homodimeric Scapharca inaequivalvis hemoglobin in the temperature range 10-300 K and the carbon monoxide rebinding kinetics after flash photolysis in the temperature range 60-200 K. The two sets of results indicate that Scapharca hemoglobin has a very rigid protein structure compared with other hemeproteins. This feature is brought out i) by the absence of nonharmonic contributions to the soft modes coupled to the Soret band in the liganded derivatives, and ii) by the almost "in plane" position of the iron atom in the photoproduct obtained approximately 10(-8) s after dissociating the bound carbon monoxide molecule at 15 K.

Animals↗

PubMedDate not supplied

Identification and structural characterization of an LYT-2/3 homolog in tunicates.

1. A serologic and structural homolog to murine Lyt-2/3 molecular complex was sought in tunicate hemocytes by using a monoclonal antibody specific to Lyt-2 framework determinants (mAb 53-6.7). 2. This antibody labeled a distinct population of tunicate hemocytes, as determined in indirect immunofluorescence and FACS analysis, and immunoprecipitated disulfide-bonded subunits from hemocytes equivalent to the 38 kDa (alpha), 34 kDa (alpha') and 30 kDa (beta) subunits of murine Lyt-2/3 molecules. 3. As in mice, tunicate alpha- and alpha' -subunits each appeared to bear three N-linked oligosaccharides, one high mannose- and two complex-type glycans and focused as a number of heterogeneous spots on IEF gels. 4. In contrast, beta-subunits of both species were associated with a single N-linked glycan of the complex type and focused as basic components of limited charge heterogeneity. 5. Based on tryptic peptide patterns, alpha and alpha' -subunits, are likely to be structurally similar in both tunicate and mouse complexes. 6. However, CNBr cleavage patterns indicated that the alpha-subunit of both species may differ in the size-location of the intrachain disulfide bridge. 7. Collectively our observations suggest the phylogenetic emergence of an Lyt-2/3 homolog at an early level of evolution.

Animals↗

PubMed1995

NMR structure of a stable "OB-fold" sub-domain isolated from staphylococcal nuclease.

Similar folds often occur in proteins with dissimilar sequences. The OB-fold forms a part of the structures of at least seven non-homologous proteins that share either oligonucleotide or oligosaccharide binding functions. A 1-103 fragment corresponding to the OB-fold of the 149 amino acid residue staphylococcal nuclease gives NMR spectra characteristic of an unfolded protein, i.e. the wild-type nuclease sequence is insufficient to maintain a stable tertiary structure in the absence of the C-terminal one-third of this single-domain protein. By contrast, the 1-103 fragment of nuclease with the mutations Val66Leu and Gly88Val adopts a stable tertiary structure. The NMR solution structure of this latter fragment is a close variation of the OB-fold found in the X-ray structure of the parent protein. The Val66Leu and Gly88Val mutations appear to stabilize tertiary structure by consolidating the hydrophobic core of the nuclease OB-fold sub-domain. Taken together, these results suggest that recurrent structural motifs such as the OB-fold may in some cases represent vestiges of autonomous folding units that, during evolution, have become integrated into more complex cooperative folding domains.

Magnetic Resonance Spectroscopy↗

PubMed2006

Characterization and activity analysis of catalytic water oxidation induced by hybridization of [(OH(2))(terpy)Mn(mu-O)(2)Mn(terpy)(OH(2))](3+) and clay compounds.

Hybridization of [(OH(2))(terpy)Mn(mu-O)(2)Mn(terpy)(OH(2))](3+) (terpy= 2,2':6',2' '-terpyridine) (1) and mica clay yielded catalytic dioxygen (O(2)) evolution from water using a CeIV oxidant. The reaction was characterized by various spectroscopic measurements and a kinetic analysis of O(2) evolution. X-ray diffraction (XRD) data indicates the interlayer separation of mica changes upon intercalation of 1. The UV-vis diffuse reflectance (RD) and Mn K-edge X-ray absorption near-edge structure (XANES) data suggest that the oxidation state of the di-mu-oxo Mn(2) core is Mn(III)-Mn(IV), but it is not intact. In aqueous solution, the reaction of 1 with a large excess Ce(IV) oxidant led to decomposition of 1 to form MnO(4-) ion without O(2) evolution, most possibly by its disproportionation. However, MnO(4-) formation is suppressed by adsorption of 1 on clay. The maximum turnover number for O(2) evolution catalyzed by 1 adsorbed on mica and kaolin was 15 and 17, respectively, under the optimum conditions. The catalysis occurs in the interlayer space of mica or on the surface of kaolin, whereas MnO(4-) formation occurs in the liquid phase, involving local adsorption equilibria of adsorbed 1 at the interface between the clay surface and the liquid phase. The analysis of O(2) evolution activity showed that the catalysis requires cooperation of two equivalents of 1 adsorbed on clay. The second-order rate constant based on the concentration (mol g(-1)) of 1 per unit weight of clay was 2.7 +/- 0.1 mol(-1) s(-1) g for mica, which is appreciably lower than that for kaolin (23.9 +/- 0.4 mol(-1) s(-1) g). This difference can be explained by the localized adsorption of 1 on the surface for kaolin. However, the apparent turnover frequency ((kO(2))app/s(-1)) of 1 on mica was 2.2 times greater than on kaolin when the same fractional loading is compared. The higher cation exchange capacity (CEC) of mica statistically affords a shorter distance between the anionic sites to which 1 is attracted electrostatically, making the cooperative interaction between adsorbed molecules of 1 easier than that on kaolin. The higher CEC is important not only for attaining a higher loading but also for the higher catalytic activity of adsorbed 1.

Journal Article↗

PubMedDate not supplied

Utilization of military support in the response to hurricane Marilyn: implications for future military-civilian cooperation.

INTRODUCTION: The past decade has been a period of evolution for the Federal disaster response system within the United States. Two domestic hurricanes were pivotal events that influenced the methods used for organizing Federal disaster assistance. The lessons of Hurricane Hugo (1989) and Hurricane Andrew (1992) were incorporated into the successful response to Hurricane Marilyn in the U.S. Virgin Islands in 1995. Following each of these storms, the Department of Defense was a major component of the response by the health sector. Despite progress in many areas, lack of clear communication between military and civilian managers and confusion among those requesting Department of Defense health resources may remain as obstacles to rapid response. METHODS: This discussion is based on an unpublished case report utilizing interviews with military and civilian managers involved in the Hurricane Marilyn response. RESULTS: The findings suggest that out-of-channel pathways normally utilized in the warning and emergency phase of the response remained operational after more formal civilian-military communication pathways and local assessment capability had been established. CONCLUSION: It is concluded that delays may be avoided if the system in place was to make all active pathways for the request and validation of military resources visible to the designated Federal managers located within the area of operations.

Attitude of Health Personnel↗