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Induction, by thymidylate stress, of genetic recombination as evidenced by deletion of a transferred genetic marker in mouse FM3A cells.

Studies were made on the genetic consequences of methotrexate-directed thymidylate stress, focusing attention on a human thymidylate synthase gene that was introduced as a heterologous genetic marker into mouse thymidylate synthase-negative mutant cells. Thymidylate stress induced thymidylate synthase-negative segregants with concomitant loss of human thymidylate synthase activity with frequencies 1 to 2 orders of magnitude higher than the uninduced spontaneous level in some but not all transformant lines. Induction of the segregants was suppressed almost completely by cycloheximide and partially by caffeine. Thymidylate stress did not, however, induce mutations, as determined by measuring resistance to ouabain or 6-thioguanine. Thymidylate synthase-negative segregants were also induced by other means such as bromodeoxyuridine treatment and X-ray irradiation. In each of the synthase-negative segregants induced by thymidylate stress, a DNA segment including almost the whole coding region of the transferred human thymidylate synthase gene was deleted in a very specific manner, as shown by Southern blot analysis with a human Alu sequence and a human thymidylate synthase cDNA as probes. In the segregants that emerged spontaneously at low frequency, the entire transferred genetic marker was lost. In the segregants induced by X-ray irradiation, structural alterations of the genetic marker were random. These results show that thymidylate stress is a physiological factor that provokes the instability of this exogenously incorporated DNA in some specific manner and produces nonrandom genetic recombination in mammalian cells.

Animals↗

Genetic and environmental factors in the immunopathogenesis of atopy: interaction of Helicobacter pylori infection and IL4 genetics.

BACKGROUND: Both genetic and environmental factors, e.g. early childhood infections, have a role in the pathogenesis of atopic diseases. OBJECTIVE: To examine simultaneously the strength and possible interactions of two known such factors, IL4 genetics and Helicobacter pylori infection, on the risk of atopy and asthma. METHODS: Gene polymorphism analyses and skin prick tests (SPT) were determined in 245 adult asthmatics and 405 nonasthmatic controls of population-based case-control study. SPTs were used as an indicator of atopy. H. pylori infection was verified by detecting anti-H. pylori IgG antibodies in sera. RESULTS: A significant negative association was seen between the presence H. pylori antibodies and SPT positivity (> or =1 positive reactions) in both asthmatics and controls (p = 0.002 and p = 0.025, respectively) but the effect of IL-4 polymorphism (SNP -590C/T) was nonsignificant in both groups (p = 0.071 and p = 0.072, respectively). However, IL4 genetics had an effect on susceptibility to H. pylori: asthmatics carrying the IL4 -590 allele T had a diminished risk to be H. pylori infected (OR 0.485 95%CI 0.287-0.819). This effect was not seen in controls. Logistic regression analysis indicated that H. pylori and IL4 effects on atopy risk are not interdependent. CONCLUSIONS: This study showed that the effect of H. pylori infection on atopy risk is stronger than that of IL4 genetics. There is no interaction between these factors on the pathogenesis of atopy suggesting that these factors have distinct immunopathogenetic mechanisms. However, the genetic effect may modify the role of infective agents by effecting on susceptibility to disease.

Aged↗

Influence of genetic factors of humans, mosquitoes and parasites, on the evolution of Plasmodium falciparum infections, malaria transmission and genetic control methods: a review of the literature.

Despite significant progress, malaria remains a public health problem in many regions, particularly in sub-Saharan Africa. This situation is partly explained by the mosquito's resistance to insecticides and the emergence of parasite resistance to antimalarial drugs. Indeed, in spite of the various vectors' controls, insecticide resistance emerges from multi-generational selection and poses worldwide concern. In parallel, artemisinin resistance unfortunately emerged independently in multiple countries in eastern Africa. Since 2014, artemisinin resistance has been observed in 6 countries in Africa and, more concerningly, the evidence from longitudinal molecular surveys in these countries suggests that it is spreading. While phenotypic evidence of treatment failure is still limited, the increasing reports of validated artemisinin resistance mutations are alarming. Unlike the emergence of artemisinin resistance in South-East Asia, our understanding of the genetic determinants of artemisinin resistance and our ability to sequence and map the spread of resistance are significantly greater. In addition to mosquito and parasite genetics affecting malaria evolution, many human individual variants have been identified that are associated with malaria protection, but the most important of all relates to the structure or function of red blood cells, the classical polymorphisms that causes sickle cell trait, α-thalassaemia, G6PD deficiency, and the major red cell blood group variants. In that biological complex context, there is a need to characterize the various genetic factors in Plasmodium falciparum, humans and mosquitoes that are potentially associated with resistance to antimalarial drugs and insecticides, and their involvement in the evolution, severity and transmission of malaria. In this direction, A comprehensive literature review was conducted to capture the objectives highlighted above. The advances in genomic surveillance and emerging genetic control strategies, such as gene drive technology were also considered in this review. We used search engines such as PubMed and Google scholar to retrieve articles useful to the objective of this paper and information on the knowledge of genetic factors and methods that contributed to malaria control were synthesized.

Humans↗

Marker-based quantitative genetics in the wild?: the heritability and genetic correlation of chemical defenses in eucalyptus.

Marker-based methods for estimating heritability and genetic correlation in the wild have attracted interest because traditional methods may be impractical or introduce bias via G x E effects, mating system variation, and sampling effects. However, they have not been widely used, especially in plants. A regression-based approach, which uses a continuous measure of genetic relatedness, promises to be particularly appropriate for use in plants with mixed-mating systems and overlapping generations. Using this method, we found significant narrow-sense heritability of foliar defense chemicals in a natural population of Eucalyptus melliodora. We also demonstrated a genetic basis for the phenotypic correlation underlying an ecological example of conditioned flavor aversion involving different biosynthetic pathways. Our results revealed that heritability estimates depend on the spatial scale of the analysis in a way that offers insight into the distribution of genetic and environmental variance. This study is the first to successfully use a marker-based method to measure quantitative genetic parameters in a tree. We suggest that this method will prove to be a useful tool in other studies and offer some recommendations for future applications of the method.

Australian Capital Territory↗

Genetic basis for necrotizing enterocolitis--risk factors and their relations to genetic polymorphisms.

Necrotizing enterocolitis (NEC) is a common, life-threatening neonatal gastrointestinal disease; it affects approximately 11% of extremely premature neonates. The etiology of NEC is multifactorial. Risk factors may roughly be grouped into four main categories: prematurity; transient ischemia of the intestine; local/systemic inflammation predisposing the bowel to injury, and therapeutic interventions. Recent studies have shown that carrier state of genetic polymorphisms may be associated with perinatal morbidity, including NEC. In perinatal disorders, the significance of genetic variants of cytokines, the renin-angiotensin-aldosterone system, and surfactant proteins have been investigated most widely. Positive findings indicate the implication of genetic polymorphisms of proinflammatory cytokines in premature birth; angiotensin converting enzyme in perinatal adaptation and angiotensin type 1 receptor in the closure of ductus arteriosus; surfactant proteins A and B in respiratory distress syndrome; interleukin (IL)-6 in sepsis, and IL-4-receptor alpha chain and IL-18 in NEC. This review provides an insight into the genetics of NEC and summarizes genetic data in light of pathologic processes leading to NEC.

Chorioamnionitis↗

[Analysis of genetic diversity of wheat using genetic resources information system GRIS].

The possibilities of using the Genetic Resources Information and Analysis System (GRIS) 3.2, a database and software package, in studies of various aspects of genetic diversity in wheat are demonstrated. A model of genetic diversity was analyzed; diversity levels were estimated in wheat from various regions at different times. The genetic basis of Russian winter and spring common wheat cultivars was investigated. Transmission of powdery mildew resistance genes was traced in cultivars with identified Pm genes. For some genes, patterns of geographical distribution were characterized. Description of GRIS 3.2 is given: the package consists of a database on the global gene pool of wheat and software on genealogical and statistic analyses of genetic diversity.

Databases, Factual↗

[Hereditary cancer and genetic testing: the role of division of clinical and molecular genetics].

Genetic testing has been widely available and useful in several kinds of familial cancer. Shinshu University Hospital established a division of clinical and molecular genetics as one of its central service departments. We have a staff meeting once a week to discuss each case to provide the suitable counseling and the ethical-legal and social issues. We performed genetic testing in 44 cases, including familial adenomatous polyposis, multiple endocrine neoplasia type 1 and 2, familial breast cancer, von Hippel-Lindau disease, and Li-Fraumeni syndrome. This is the first clinical genetics department in the National University Hospitals in Japan and this system increases the utility of genetic testing.

Ethics↗

The genetic epidemiology of cancer: interpreting family and twin studies and their implications for molecular genetic approaches.

The recent completion of a rough draft of the human genome sequence has ushered in a new era of molecular genetics research into the inherited basis of a number of complex diseases such as cancer. At the same time, recent twin studies have suggested a limited role of genetic susceptibility to many neoplasms. A reappraisal of family and twin studies for many cancer sites suggests the following general conclusions: (a) all cancers are familial to approximately the same degree, with only a few exceptions (both high and low); (b) early age of diagnosis is generally associated with increased familiality; (c) familiality does not decrease with decreasing prevalence of the tumor-in fact, the trend is toward increasing familiality with decreasing prevalence; (d) a multifactorial (polygenic) threshold model fits the twin data for most cancers less well than single gene or genetic heterogeneity-type models; (e) recessive inheritance is less likely generally than dominant or additive models; (f) heritability decreases for rarer tumors only in the context of the polygenic model but not in the context of single-locus or heterogeneity models; (g) although the family and twin data do not account for gene-environment interactions or confounding, they are still consistent with genes contributing high attributable risks for most cancer sites. These results support continued search for genetic and environmental factors in cancer susceptibility for all tumor types. Suggestions are given for optimal study designs depending on the underlying architecture of genetic predisposition.

Environment↗

[N. I. Vavilov's law of genetic homology in modern genetics].

The paper considers the place in modern genetics and the significance of the main N.I. Vavilov's generalization--his law of homologous series in variation. Recent analysis of amino acid sequences of gene products (proteins) and especially of nucleotide sequences of genes shows the high degree of molecular homology between genes of closely related species and the retention of the homology through the course of evolution. The study of homologous genes disposition in chromosomes shows conservation of the similar orders of genes in many organisms, especially in mammals. Thus, the law of genetic homology has been confirmed by modern genetic researchers. It is a foundation-stone of comparative genetics--new and rapid developing branch of genetics which involves studies on similarity and differences in heredity and variation in organisms of different taxa.

Amino Acid Sequence↗

[Problems in the genetics of stress. IV. A genetic analysis of the level of autonomic reactivity in emotional stress in rats].

A genetic analysis of hypertensive reactions under condition of emotional stress in three inbred strains of rats (Wistar, Sprague-Dowly and August) and their F1 reciprocal hybrids is carried out. Highly significant genotypic differences in the arterial pressure level during emotional stress and no genetic diversity in the basal state were found. Application of our own methos to genetic analysis of incomplete diallelic tables for Griffing's experimental design 1 (model 1) showed an existence of significant additive component of genetic variance in autonomic reactivity under the stress. The role of the stress as a factor of differentiation of the genetic structure of population is discussed.

Analysis of Variance↗

[From the genetics of disease to the genetics of behavior].

Apparently a kind of antimony exists between the psychopathological approach which implies a continuum between normality and abnormality and genetic studies which intend to give a causal explanation of the mental illness. The choice of the behavioral phenotype requires nevertheless some psychopathological and clinical criteria. Furthermore, when we consider the mode of action of the genetic factor we are dealing with a behavioral target as much as with physiological mechanisms. When we discover a genetic factor in the determinism of a particular mental disorder, we must admit that the same factor is involved in the determinism of the normal behavior which corresponds to this disorder. It follows that the genetic analysis of mental illness appears as a particular methodology for the genetic approach of behavior in a general way. But it needs that we build up a new phenomenology of human behavior which fits with this approach.

Bipolar Disorder↗

[Genetic structure and origin of the tetraploid toad Bufo danatensis Pisanetz, 1978 (Amphibia, Bufonidae) of Central Asia. Differentiation of geographic forms and genetic relationship between diploid and tetraploid species].

A hierarchical system, consisting of several levels of genetic divergence, is formed by distribution of genetic distances between diploid taxa of the green toad species complex (subspecies Bufo viridis viridis--B. v. turanensis and species B. viridis--B. sp.) and taxa representing western (B. viridis s.l.) and eastern (B. raddei) Pale-arctic regions. Formally, genetic differentiation of the tetraploid toad B. danatensis from the parapatric diploid species reaches the species level. Genetic diversity of the tetraploid species is more than twofold higher than the total diversity of two modern diploid species. This suggests that B. danatensis was formed with the participation of other unknown species in the past. The polyploid species B. danatensis is assumed to have originated by hybridization of two species groups that arose approximately 2.6 million years ago in Mediterranean and Central Asian regions of the western Palearctic. The genetic heterogeneity of geographical populations of the polyploid species indicates its polyphiletic origin. The heterogeneity range suggests that formation of the tetraploid species continued for a very long period (about 1 million years).

Animals↗

Microevolution and genetic affinities among six Amerindian tribes of lower Central America: comparative genetic study of serum proteins.

We evaluate the pattern of genetic variation among native Mesoamerican Amerindians by the construction of a gene frequency map that reflects the past action of evolutionary forces. The analysis is based on the theory that genes of modern human populations carry the encoded history even of humans' remote past and their early wanderings around the globe. We examined the serum proteins TF, PI, F13B and AHSG on 491 samples of 6 Mesoamerican Amerindian tribes (Guaymi, Bribri, Cabecar, Teribe, Guatuso, and Huetar) and 2 tribal mixed samples (Teribe x Guaymi and Bribri x Cabecar). We find a distinct genetic pattern in the examined tribes that clearly separates the Mesoamerican Amerindians from other living Amerindian groups. The proteins, TF, PI, and AHSG proved to be especially rich in special genetically fixed variants and polymorphisms, and F13B proved to be a powerful genetic marker to distinguish human groups. Using Nei's distance D and Mahalanobis's D2, we compared the polymorphisms and allele frequencies at the four serum protein loci to discern degrees of similarity between the samples. These data are presented in the dendrograms computed by average linkage cluster analyses and in two kinds of unrooted phylogenetic trees, neighbor-joining trees and split decompositions. Estimations are made on Hardy-Weinberg equilibrium and on genetic diversity and average heterozygosity index.

Blood Proteins↗

[The epidemiology and genetics of asthma. II. Genetic aspects of the epidemiology of asthma and atopy].

Asthma is regarded as a disease with a complex interaction between genetic and environmental factors. Since the end of the 1970s and during the 80s the world has seen an increase in the prevalence, morbidity and mortality linked to asthma. The rapidity of progress of this phenomenon means that it cannot be explained only by modification of genetic factors and stresses the preponderance of exogenous factors. The purpose of this review is to examine the epidemiological knowledge of these environmental factors and of the genetic factors in asthma in order to underline how these genetic and exogenous factors interact and modulate the occurrence of the asthmatic disease. In the first part of this general review we discussed the epidemiology of asthma in terms of prevalence, incidence, mortality, cost and socio-professional and scholastic repercussions and underlined for each environmental factor its causal role and/or exacerbation in asthma as well as its contribution in the increased prevalence and severity of asthma. In the second part of this general view we touch on the epidemiological knowledge of the genetics of asthma and of atopy.

Asthma↗

Preimplantation genetic diagnosis: prevention of serious genetic disorders.

Couples who are at high risk of passing a severe debilitating genetic disorder on to their offspring now have an option for preventing their future child from being affected by the disorder. The new field in medical genetics, preimplantation genetic diagnosis (PGD), involves testing single cells biopsied from in-vitro derived preimplantation stage (approximately 8-cell) preembryos and assessing each of them as to whether it is affected or not. Thus, PGD dramatically reduces the risk of a couple having a child afflicted with a genetic disorder by diagnosing an affected preembryo before it is transferred to the mother for implantation and establishment of pregnancy. This preventive procedure allows parents who are known carriers of a severe genetic disease to have unaffected children.

Embryo Implantation↗

Analysis of genetic abnormalities provides insights into genetic evolution of hyperdiploid myeloma.

Aneuploidy is ubiquitous in human cancer and is seen as whole chromosome gains and losses, unbalanced translocations and inversions, duplications, deletions and loss of heterozygosity. Within this complexity, some subgroups of aneuploid tumors emerge as distinct biological and clinical entities. Hyperdiploid myeloma (H-MM), characterized by hyperdiploid chromosome numbers because of nonrandom trisomies, is one such example. We undertook a comprehensive survey of the karyotypes of a large number of H-MM (n = 469) to describe fully genomic instability in these tumors, to dissect pathways of genetic evolution, and identify distinct subgroups based on their genetic changes. While selective pressure apparently favors the emergence of clones with gains of chromosomes 3, 5, 7, 9, 11, 15, 19, and 21, a background of ongoing genomic instability results in gains of other chromosomes, albeit at a much lower prevalence. A deduced temporal analysis of these karyotypes indicates that selected gains are early events. Other events occurring later in the course of the disease include secondary chromosome translocations and monosomies. The development of these genetic aberrations is thus highly ordered and undoubtedly of biological relevance. Within this framework, we propose a model of genetic evolution in H-MM.

Chromosome Aberrations↗

Using factor scores to detect G X E interactive origin of "pure" genetic or environmental factors obtained in genetic covariance structure analysis.

Moment expressions for individual factor scores can serve as simple tests for the presence of a particular class of interaction factors that are disguised as pure genetic and/or environmental factors. That is, individual genetic and environmental factor scores may be used to construct fourth-order moments of these factors in order to test whether a common genetic or environmental factor in the multivariate genetic factor model is in fact of the interactive origin concerned. Expected fourth-order moments are derived for cases with and without interaction. Application of fourth-order moments of factor scores to detect interactive origin of common factors is illustrated with simulated twin data.

Environment↗

The genetic code: what is it good for? An analysis of the effects of selection pressures on genetic codes.

How did the "universal" genetic code arise? Several hypotheses have been put forward, and the code has been analyzed extensively by authors looking for clues to selection pressures that might have acted during its evolution. But this approach has been ineffective. Although an impressive number of properties has been attributed to the universal code, it has been impossible to determine whether selection on any of these properties was important in the code's evolution or whether the observed properties arose as a consequence of selection on some other characteristic. Therefore we turned the question around and asked, what would a genetic code look like if it had evolved in response to various different selection pressures? To address this question, we constructed a genetic algorithm. We found first that selecting on a particular measure yields codes that are similar to each other. Second, we found that the universal code is far from minimized with respect to the effects of mutations (or translation errors) on the amino acid compositions of proteins. Finally, we found that the codes that most closely resembled real codes were those generated by selecting on aspects of the code's structure, not those generated by selecting to minimize the effects of amino acid substitutions on proteins. This suggests that the universal genetic code has been selected for a particular structure-a structure that confers an important flexibility on the evolution of genes and proteins-and that the particular assignments of amino acids to codons are secondary.

Algorithms↗