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PubMed1999

Modelling photochemical oxidant formation, transport, deposition and exposure of terrestrial ecosystems.

The chemical processes responsible for production of photochemical oxidants within the troposphere have been the subject of laboratory and field study throughout the last three decades. During the same period, models to simulate the atmospheric chemistry, transport and deposition of ozone (O(3)) from individual urban sources and from regions have been developed. The models differ greatly in the complexity of chemical schemes, in the underlying meteorology and in spatial and temporal resolution. Input information from land use, spatial and temporally disaggregated emission inventories and meteorology have all improved considerably in recent years and are not fully implemented in current models. The development of control strategies in both North America and Europe to close the gaps between current exceedances of environmental limits, guide values, critical levels or loads and full compliance with these limits provides the focus for policy makers and the support agencies for the research. The models represent the only method of testing a range of control options in advance of implementation. This paper describes currently applied models of photochemical oxidant production and transport at global and regional scales and their ability to simulate individual episodes as well as photochemical oxidant climatology. The success of current models in quantifying the exposure of terrestrial surfaces and the population to potentially damaging O(3) concentrations (and dose) is examined. The analysis shows the degree to which the underlying processes and their application within the models limit the quality of the model products.

Journal Article↗

PubMed2006

Synchrotron-radiation-stimulated etching of SiO2 thin films with a tungsten nano-pillar mask.

A nano-pattern of SiO(2) on a Si (100) surface has been demonstrated by synchrotron-radiation-stimulated etching with a tungsten nano-pillar mask. The reaction gas was a mixture of SF(6) and O(2). The mask was fabricated using a focused ion beam with W(CO)(6) as the source gas. The width and height of the tungsten nano-pillar were approximately 80 nm and 160 nm, respectively. Synchrotron radiation irradiation with flowing SF(6) and O(2) effectively etches the silicon dioxide, and the etching process followed the surface photochemical reaction. The etched surface was very flat, and no undercutting occurred during the etching process.

Membranes, Artificial↗

PubMed2004

Photochemical pinacol rearrangements of unsymmetrical diols.

The photochemical pinacol reaction of a series of nonsymmetrical 9-fluorenyl-substituted vic-diols was investigated and compared with their acid-catalyzed thermal reaction. Unlike the thermal reaction, the radiation-induced processes involve only fluorenyl cations, as is reflected in differences of product distribution between the two reactions. From the product studies, substituent migratory aptitudes are reversed in the photochemical process, suggesting that kinetic control takes place under neutral conditions unlike the acid-catalyzed thermal reactions. The presence of fluorenyl cation intermediates and their lifetimes were established by laser flash spectroscopy studies.

Journal Article↗

PubMedDate not supplied

Chromatographic enantiomer separation of chiral xenobiotics and their metabolites--a versatile tool for process studies in marine and terrestrial ecosystems.

A review discussing methodical aspects of enantioselective chromatographic separation of chiral environmental xenobiotics as well as examples for process studies reported in literature. The process studies include microbial transformation of chiral pollutants in aquatic ecosystems, their enzymatic transformation in biota, their photochemical degradation, air/sea exchange processes and atmospheric long range transport, and enantioselective toxic effects.

Animals↗

PubMed1991

Photochemical coatings for the prevention of bacterial colonization.

Biomaterials are being used with increasing frequency for tissue substitution. Implantable, prosthetic devices are instrumental in the saving of patients' lives and enhancing the quality of life for many others. However, the greatest barrier to expanding the use of biomedical devices is the high probability of bacterial adherence and proliferation, causing very difficult and often untreatable medical-device centered infections. The difficulty in treating such infections results in great danger to the patient, and usually retrieval of the device with considerable pain and suffering. Clearly, development of processes that make biomedical devices resistant to bacterial adherence and colonization would have widespread application in the field of biomedical technology. A photochemical surface modification process is being investigated as a generic means of applying antimicrobial coatings to biomedical devices. The photochemical process results in covalent immobilization of coatings to all classes of medical device polymers. A discussion of the photochemical surface modification process and preliminary results demonstrating the success of photochemical coatings in formulating microbial-resistant surfaces are presented in this paper.

Anti-Bacterial Agents↗

PubMed1993

Shared thematic elements in photochemical reaction centers.

The structural, functional, and evolutionary relationships between photosystem II and the purple nonsulfur bacterial reaction center have been recognized for several years. These can be classified as "quinone type" (type II) photosystems because the terminal electron acceptor is a mobile quinone molecule. The analogous relationship between photosystem I and the green sulfur bacterial (and helicobacterial) reaction centers has only recently become clear. These can be classified as "iron-sulfur type" (type I) photosystems because the terminal electron acceptor consists of one or more bound iron-sulfur clusters. At a fundamental level, the quinone type and iron-sulfur type reaction centers share a common photochemical motif in the early process of charge separation, leading to the speculation that all photochemical reaction centers have a common evolutionary origin. This review summarizes the current state of knowledge in comparative reaction center biochemistry between prokaryotic bacteria, cyanobacteria, and green plants.

Bacterial Physiological Phenomena↗

PubMed2006

Synthesis, photophysical, photochemical, and redox properties of nitrospiropyrans substituted with Ru or Os tris(bipyridine) complexes.

Photochromic nitrospiropyrans substituted with 2,2'-bipyridine (bpy), [Ru(bpy)3]2+, and [Os(bpy)3]2+ groups were synthesized, and their photophysical, photochemical, and redox properties investigated. Substitution of the spiropyran with the metal complex moiety results in strongly decreased efficiency of the ring-opening process as a result of energy transfer from the excited spiropyran to the metal center. The lowest excited triplet state of the spiropyran in its open merocyanine form is lower in energy than the excited triplet MLCT level of the [Ru(bpy)3]2+ moiety but higher in energy than for [Os(bpy)3]2+, resulting in energy transfer from the excited ruthenium center to the spiropyran but inversely in the osmium case. The open merocyanine form reduces and oxidizes electrochemically more easily than the closed nitrospiropyran. Like photoexcitation, electrochemical activation also causes opening of the spiropyran ring by first reducing the closed form and subsequently reoxidizing the corresponding radical anion in two well-resolved anodic steps. Interestingly, the substitution of the spiropyran with a Ru or Os metal center does not affect the efficiency of this electrochemically induced ring-opening process, different from the photochemical path.

Journal Article↗

PubMed2002

Photochemical study of hexahydroquinoline derivatives--a new group of calcium antagonists.

The photochemical stability of 2,6,6-trimethyl-3-carbmethoxy-4-phenyl-5-oxo-1,4,5,6,7,8-hexahydroquinoline (HHQ) derivatives with different substituents on the phenyl ring (-Cl, -NO2, -CF3, -CH3, -OCH3) has been studied. The process of photodegradation was studied by UV spectrophotometry. The rate of photodegradation was found to depend on the type and position of the substituent in the phenyl ring. The compounds most susceptible to the damaging effect of light proved to be those containing the nitro group, in particular with the substituent in the ortho position of the aromatic ring. Derivatives with alkyl (-CH3) and halo-alkyl (-CF3) substituents showed the greatest photochemical stability. The compounds with substituents in the ortho position were found to be much less photostable than the meta isomers. The quantum yield values obtained ranged from 10(-4) to 10(-3), indicating the occurrence of secondary photochemical processes initiated by the primary products of decomposition.

Calcium Channel Blockers↗

PubMed2002

Photochemical Study of Hexahydroquinoline Derivatives - A New Group of Calcium Antagonists.

The photochemical stability of 2, 6, 6-trimethyl-3-carbmethoxy-4-phenyl-5-oxo-1, 4, 5, 6, 7, 8-hexahydroquinoline (HHQ) derivatives with different substituents on the phenyl ring (-Cl, -NO(2), -CF(3), -CH(3), -OCH(3)) has been studied.The process of photodegradation was studied by UV spectrophotometry. The rate of photodegradation was found to depend on the type and position of the substituent in the phenyl ring. The compounds most susceptible to the damaging effect of light proved to be those containing the nitro group, in particular with the substituent in the ortho position of the aromatic ring. Derivatives with alkyl (-CH(3)) and halo-alkyl (-CF(3)) substituents showed the greatest photochemical stability. The compounds with substituents in the ortho position were found to be much less photostable than the meta isomers. The quantum yield values obtained ranged from 10(-4) to 10(-3), indicating the occurrence of secondary photochemical processes initiated by the primary products of decomposition.

Journal Article↗

PubMed2006

A complete active space self-consistent field study of the photochemistry of nitrosamine.

Photodissociation mechanisms of nitrosamine (NH2NO) have been studied at the complete active space self-consistent field level of theory in conjunction with atomic-natural-orbital-type basis sets. In addition, the energies of all the critical points and the potential energy curves connecting them have been recomputed with the multiconfigurational second-order perturbation method. Ground state minimum of nitrosamine has a C1 nonplanar structure with the hydrogen atoms of the amino moiety out of the plane defined by the N-N-O bonds. Electronic transitions to the three lowest states are allowed by selection rules: (i) S0-->S3 (7.41 eV) has an oscillator strength of f=0.0006 and it is assigned as an (npO)0-->(piNO*)2 transition, (ii) S0-->S2 (5.86 eV) has an oscillator strength of f=0.14 and it is assigned as an npN-->piNO* transition, and (iii) S0-->S1 (2.98 eV) has an oscillator strength of f=0.002 and it is assigned as an npO-->piNO* transition. It is found that N-N bond cleavage is the most likely process in all the photochemical relevant states, namely, S1 (1 1A"), S2 (2 1A'), and T1 (1 3A"). While S1 and T1 yield exclusively homolytic dissociation: NH2NO-->NH2 (1 2B1)+NO(X 2Pi), on S2 the latter process constitutes the major path, but two additional minor channels are also available: adiabatic homolytic dissociation: NH2NO-->NH2 (1 2A1)+NO(X 2Pi), and adiabatic oxygen extrusion: NH2NO-->NH2N (1 3A1)+O(3P). The excited species NH2 (1 2A1) experiences a subsequent ultrafast decay to the ground state, the final products in all cases the fragments being in their lowest electronic state. We have not found a unimolecular mechanism connecting excited states with the ground state. In addition, homolytic dissociation in the ground state, tautomerizations to NHNOH and NHNHO, and intersystem crossings to T1 are considered. The most favorable process on this state is the isomerization to NHNOH.

Journal Article↗

PubMed1990

Relative contributions of zeaxanthin-related and zeaxanthin-unrelated types of ;high-energy-state' quenching of chlorophyll fluorescence in spinach leaves exposed to various environmental conditions.

We have identified two rapidly relaxing components of non-photochemical fluorescence quenching which suggests that dissipative processes occur in two different sites in the photochemical system of leaves. Under a variety of treatment conditions involving different leaf temperatures, photon flux densities (PFD), exposure times, and in the presence of 5% CO(2) or 2% O(2), no CO(2), the components of nonphotochemical fluorescence quenching were characterized with respect to their sensitivity to dithiothreitol (DTT, which completely inhibits zeaxanthin formation), the effect on instantaneous fluorescence, and the rapidity of relaxation upon darkening. Under most circumstances the DTT-sensitive component (associated with a quenching of instantaneous fluorescence and correlated with zeaxanthin) represented the majority of the rapidly relaxing portion of fluorescence quenching. A DTT-insensitive (zeaxanthin-independent) component, which also relaxed rapidly upon darkening but was not associated with a quenching of instantaneous fluorescence, became proportionally greater in an atmosphere of 2% O(2) and no CO(2), at elevated leaf temperatures, and to some degree during the induction of photosynthesis (1 minute after the onset of illumination). A third component which was also DTT-insensitive and was sustained upon darkening, was largely suppressed in 2% O(2), O% CO(2). We conclude that, under conditions favorable for photosynthesis, energy dissipation occurred mainly in the chlorophyll antennae whereas, under conditions less favorable for photosynthesis, a second dissipation process, probably in or around the reaction center of photosystem II, also developed. Furthermore, evidence is presented that the zeaxanthin-associated dissipation process prevents sustained inactivation of photochemistry by excessive light.

Journal Article↗

PubMed2006

[The influence of photochemically activated 40% solution of levomecol ointment toward apoptosis in muscles of the rats posterior extremities in inflammatory-purulent complications of diabetes mellitus].

The influence of photochemically activated 40% solution of Levomecol ointment toward the tissue apoptosis while occurrence of ischemic complications of diabetes mellitus was studied in experiment on 184 adult mongrel white male rats weighted 250-310 g. While modelling of ischemic complications of diabetes mellitus there was revealed the cells apoptosis regulation in soft tissues of the affected lower extremities, causing worsening of the reparative processes course. Application of photochemically activated 40% solution of Levomecol ointment had promoted an effective correction of disorders in the cells apoptosis regulation. It substantiates the expediency of the method introduction into clinical practice.

Animals↗

PubMed2002

Self-assembly of transition-metal-based macrocycles linked by photoisomerizable ligands: examples of photoinduced conversion of tetranuclear-dinuclear squares.

A series of hetero- and homometallic square complexes bridged by a photoactive 4,4'-azopyridine (AZP) or 1,2-bis(4-pyridyl)ethylene (BPE) ligand, cyclobis[[cis-(dppf)M](mu-L)(2)(fac-Re(CO)(3)Br)](OTf)(4) (M = Pd, L = trans-AZP (5); M = Pt, L = trans-AZP (7); M = Pd, L = trans-BPE (8); M = Pt, L = trans-BPE (10)), cyclo[[cis-(dppf)M](mu-L)(2)(fac-Re(CO)(3)Br)](OTf)(2) (M = Pd, L = cis-AZP (6); M = Pd, L = cis-BPE (9)), [cis-(dppf)Pd(mu-trans-AZP)](4)(OTf)(8) (11), and [cis-(dppf)Pd(mu-cis-AZP)](2)(OTf)(4) (12), where dppf is 1,1'-bis(diphenylphosphino)ferrocene and OTf is trifluoromethanesulfonate anion, were prepared by thermodynamically driven self-assembly processes. The photophysical and photochemical properties of these complexes have been investigated, and all of them show a lack of luminescence in room temperature solution. Upon irradiation at 313 or 366 nm, Pd(II)-Re(I)-containing tetranuclear squares 5, 8, and 11 undergo photoisomerization and convert to their corresponding dinuclear complexes 6, 9, and 12, whereas Pt(II)-Re(I)-based squares 7 and 10 show only slow square disassembling processes. The tetranuclear squares can be fully recovered by heating the photoisomerized solution for several hours.

Journal Article↗

PubMed2006

Synthesis, stereochemistry, and photochemical and thermal behaviour of bis-tert-butyl substituted overcrowded alkenes.

In order to study the structural limits in the design of molecular motors, a tert-butyl substituted analogue was prepared. The unexpected photochemical and thermal isomerisation processes and the stereochemistry of new overcrowded alkene are described. The bis tert-butyl substituted alkenes were synthesised in a five-step sequence with an overall yield of 7.5%. Structural assignments of the isomers based on experimental data were supported by calculations of all four isomers of the alkene. X-Ray crystal analysis showed a strongly twisted alkene (torsion angle 39 degrees ) for a less stable photochemically generated cis-isomer.

Journal Article↗

PubMed2001

Optically programming DNA computing in microflow reactors.

The programmability and the integration of biochemical processing protocols are addressed for DNA computing using photochemical and microsystem techniques. A magnetically switchable selective transfer module (STM) is presented which implements the basic sequence-specific DNA filtering operation under constant flow. Secondly, a single steady flow system of STMs is presented which solves an arbitrary instance of the maximal clique problem of given maximum size N. Values of N up to about 100 should be achievable with current lithographic techniques. The specific problem is encoded in an initial labeling pattern of each module with one of 2N DNA oligonucleotides, identical for all instances of maximal clique. Thirdly, a method for optically programming the DNA labeling process via photochemical lithography is proposed, allowing different problem instances to be specified. No hydrodynamic switching of flows is required during operation -- the STMs are synchronously clocked by an external magnet. An experimental implementation of this architecture is under construction and will be reported elsewhere.

Computational Biology↗

PubMed2002

Second generation light-driven molecular motors. Unidirectional rotation controlled by a single stereogenic center with near-perfect photoequilibria and acceleration of the speed of rotation by structural modification.

Nine new molecular motors, consisting of a 2,3-dihydro-2-methylnaphtho[2,1-b]thiopyran or 2,3-dihydro-3-methylphenanthrene upper part and a (thio)xanthene, 10,10-dimethylanthracene, or dibenzocycloheptene lower part, connected by a central double bond, were synthesized. A single stereogenic center, bearing a methyl substituent, is present in each of the motors. MOPAC93-AM1 calculations, NMR studies, and X-ray analysis revealed that these compounds have stable isomers with pseudoaxial orientation of the methyl substituent and less-stable isomers with pseudoequatorial orientation of the methyl substituent. The photochemical and thermal isomerization processes of the motors were studied by NMR and CD spectroscopy. The new molecular motors all show two cis-trans isomerizations upon irradiation, each followed by a thermal helix inversion, resulting in a 360 degrees rotation around the central double bond of the upper part with respect to the lower part. The direction of rotation is controlled by a single stereogenic center created by the methyl substituent at the upper part. The speed of rotation, governed by the two thermal steps, was adjusted to a great extent by structural modifications, with half-lives for the thermal isomerization steps ranging from t(1/2)(theta) 233-0.67 h. The photochemical conversions of two new motors proceeded with near-perfect photoequilibria of 1:99.

Journal Article↗

PubMed2002

DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates.

Diamond, because of its electrical and chemical properties, may be a suitable material for integrated sensing and signal processing. But methods to control chemical or biological modifications on diamond surfaces have not been established. Here, we show that nanocrystalline diamond thin-films covalently modified with DNA oligonucleotides provide an extremely stable, highly selective platform in subsequent surface hybridization processes. We used a photochemical modification scheme to chemically modify clean, H-terminated nanocrystalline diamond surfaces grown on silicon substrates, producing a homogeneous layer of amine groups that serve as sites for DNA attachment. After linking DNA to the amine groups, hybridization reactions with fluorescently tagged complementary and non-complementary oligonucleotides showed no detectable non-specific adsorption, with extremely good selectivity between matched and mismatched sequences. Comparison of DNA-modified ultra-nanocrystalline diamond films with other commonly used surfaces for biological modification, such as gold, silicon, glass and glassy carbon, showed that diamond is unique in its ability to achieve very high stability and sensitivity while also being compatible with microelectronics processing technologies. These results suggest that diamond thin-films may be a nearly ideal substrate for integration of microelectronics with biological modification and sensing.

Base Sequence↗

PubMed1982

Photoactivation of the Water-Oxidation System in Isolated Intact Chloroplasts Prepared from Wheat Leaves Grown under Intermittent Flash Illumination.

Photoactivation of the latent oxygen-evolving system in intact chloroplasts isolated from wheat (Triticum aestivum L.) leaves grown under intermittent flash illumination was investigated, and the following results were obtained: (a) The water-oxidation activity generated on illuminating the isolated intact chloroplasts was as high as that generated in intact leaves, indicating that all the machinery necessary for the activity generation is assembled within intact chloroplasts. (b) The generation of water-oxidation activity was accompanied by enhancement of the activity of diphenylcarbazide-oxidation, and both processes share the same photochemical reaction but with respective rate-limiting dark reactions of different efficiencies. (c) A23187, an ionophore for divalent cations, strongly inhibited the generation of water-oxidation activity but did not affect the activity once generated, which suggested that Mn atoms in the chloroplasts are susceptible to the ionophore before photoactivation but turn immune after photoactivation. (d) The generation of water-oxidation activity was not affected by the inhibitors of ATP formation and CO(2) fixation, but was inhibited by nitrite, methylviologen and phenylmercuric acetate which suppress or inhibit the reduction of ferredoxin in intact chloroplasts. It was inferred that some factor(s) probably present in stroma to be reduced by PSI photoreaction is involved in the process of photoactivation.

Journal Article↗