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PubMed2006

Toward rational construction of gold, gold-silver, and gold-mercury string complexes: syntheses, structures, and properties of [Au(Tab)2]2L2 (L = I and PF6), {[(Tab)2M][Au(CN)2]}2 (M = Au and Ag), and {[Hg(Tab)2][Au(CN)2]2} [Tab = 4-(trimethylammonio)benzenethiolate].

The reaction of AuI with 2 equiv of TabHPF6 [TabH = 4-(trimethylammonio)benzenethiol] in the presence of excess Et3N in dimethylformamide (DMF)/MeOH afforded a binuclear gold(I) complex [Au(Tab)2]2I2.2H2O (1). Anion exchange of 1 with NH4PF6 in DMF gave rise to the more soluble complex [Au(Tab)2]2(PF6)2 (2). Treatment of 2 with K[Au(CN)2] produced a tetranuclear gold(I) complex {[(Tab)2Au][Au(CN)2]}2 (3). Analogous reactions of two known mononuclear complexes [Ag(Tab)2](PF6) (4) and [Hg(Tab)2](PF6)2 (5) with 1 or 2 equiv of K[Au(CN)2] generated one Ag2Au2 complex {[(Tab)2Ag][Au(CN)2]}2 (6) and one Au/Hg complex {[Hg(Tab)2][Au(CN)2]2} (7), respectively. Compounds 1-3, 6, and 7 were fully characterized by elemental analysis, IR spectra, UV-vis spectra, 1H NMR, and single-crystal X-ray crystallography. 1 and 2 have a similar [Au(Tab)2]2(2+) dimeric structure in which the two [Au(Tab)2]+ cations are connected via one Au-Au aurophilic interaction. In the structure of 3 or 6, each of the two pairs of [M(Tab)2]+ cation and [Au(CN)2]- anion is held together via ionic interactions to form a {[(Tab)2M][Au(CN)2]} species (M = Au, 3; Ag, 6). Two such species are further connected by one Au-Au aurophilic bonding interaction to form an uncommon Au(4) or Ag2Au2 linear string structure with three ligand-unsupported metal-metal bonds. For 7, the [Hg(Tab)2]2+ dication and the [Au(CN)2]2(2-) dianion are interconnected by the secondary Hg...N(CN) interactions to form a 1D chain structure. The thermal and luminescent properties of 1-3, 6, and 7 in solid state were also investigated.

Journal Article↗

PubMed2002

Room-temperature assembly of directional carbon nanotube strings.

Micromold with microchannels was employed in assembly of directional free-standing single-walled carbon nanotube (SWNT) strings at room temperature. The new postgrowth assembly approach could, in principle, apply not only to a wide range of SWNTs in their soluble or dispersible forms, including small diameter (0.7-0.8 nm) SWNTs, covalent- and noncovalent-functionalized SWNTs, monodispersed SWNTs with identical diameter and chirality, and fullerenes@SWNTs, which either cannot survive the high-temperature treatment or cannot be synthesized by current CVD method, but also to other soluble or dispersible one-dimensional nanostructures.

Journal Article↗

PubMed2003

Parallel molecular computations of pairwise exclusive-or (XOR) using DNA "string tile" self-assembly.

Self-assembling DNA nanostructures are an efficient means of executing parallel molecular computations. However, previous experimental demonstrations of computations by DNA tile self-assembly only allowed for one set of distinct input to be processed at a time. Here, we report the multibit, parallel computation of pairwise exclusive-or (XOR) using DNA "string tile" self-assembly. A set of DNA tiles encoding the truth table for the XOR logical operation was constructed. Parallel tile self-assembly and ligation led to the formation of reporter DNA strands which encoded both the input and the output of the computations. These reporter strands provided a molecular look-up table containing all possible pairwise XOR calculations up to a certain input size. The computation was readout by sequencing the cloned reporter strands. This is the first experimental demonstration of a parallel computation by DNA tile self-assembly in which a large number of distinct input were simultaneously processed.

DNA↗

PubMed2000

Optimal shapes of compact strings.

Optimal geometrical arrangements, such as the stacking of atoms, are of relevance in diverse disciplines. A classic problem is the determination of the optimal arrangement of spheres in three dimensions in order to achieve the highest packing fraction; only recently has it been proved that the answer for infinite systems is a face-centred-cubic lattice. This simply stated problem has had a profound impact in many areas, ranging from the crystallization and melting of atomic systems, to optimal packing of objects and the sub-division of space. Here we study an analogous problem--that of determining the optimal shapes of closely packed compact strings. This problem is a mathematical idealization of situations commonly encountered in biology, chemistry and physics, involving the optimal structure of folded polymeric chains. We find that, in cases where boundary effects are not dominant, helices with a particular pitch-radius ratio are selected. Interestingly, the same geometry is observed in helices in naturally occurring proteins.

Collagen↗

PubMed2006

Novel linear hexanuclear cobalt string complexes (Co6(12+)) and one-electron reduction products (Co6(11+)) supported by four bpyany2- ligands.

The new ligand, 2,7-bis(alpha-pyridylamino)-1,8-naphthyridine (H2bpyany), was synthesized by the reaction of 2,7-dichloro-1,8-naphthyridine with 2-aminopyridine in the presence of t-BuOK under palladium(0)-catalyzed conditions. The preparation and characterization of novel hexacobalt string complexes, [Co6(mu6-bpyany)4(NCS)2](PF6)n (n=1 (1); n=2 (2)) and [Co6(mu6-bpyany)4(OTf)2](OTf)n (n = 2 (3); n = 1 (4)) are presented. The crystal structures for compounds have been determined by X-ray crystallography. Compounds 1 and 4 have the Co6 11+ configurations and are air-stable. Compounds 2 and 3 with Co6 12+ configurations are structurally similar to 1 and 4, respectively. The electrochemistry of 1 displays four redox couples at E1/2= -0.55, +0.38, +0.91, and +1.18 V (vs. Ag/AgCl). The magnetic data show that compounds 1 and 4 are in a spin state of S = 1/2, and 2 and 3 in a spin state of S = 1. The results of the EHMO calculations on compounds 1 and 2 are in agreement with their magnetic measurements.

Journal Article↗

PubMed2006

Weak antiferromagnetic coupling for novel linear hexanuclear nickel(II) string complexes (Ni6 12+) and partial metal-metal bonds in their one-electron reduction products (Ni6 11+).

The preparation, crystal structures, magnetic properties and electrochemistry of novel linear hexanuclear nickel string complexes (Ni6(12+)) and their corresponding 1-e(-) reduction products (Ni6(11+)) are reported. In these complexes, the hexanickel chain is in a symmetrical arrangement (approximately D(4) symmetry) and is helically supported by four bpyany(2-) ligands [bpyany(2-) = the dianion of 2,7-bis(alpha-pyridylamino)-1,8-naphthyridine]. The Ni6(12+) complexes show that the two terminal nickel ions have high-spin states (S = 1) and the four inner ones have low-spin states (S = 0). The two terminal nickel ions exhibit weak antiferromagnetic coupling of ca.-5 cm(-1). All of Ni6(12+) complexes display three reversible redox couples at about -0.70, -0.20 and +1.10 V (vs. Ag/AgCl). The first reduction wave at about -0.20 V suggests facility of 1-e(-) reduction for the Ni(6)(12+) compounds. The reaction of Ni(6)(12+) complexes with hydrazine afforded the 1-e(-) reduction products (Ni6(11+)). As far as we are aware, the shortest bond distance of 2.202 A with a partial metal-metal bond was observed in Ni6(11+) compounds. The magnetic results of these Ni6(11+) compounds are in agreement with a localized model, in which the two terminal nickel ions are in a spin state of S = 1 whereas the central Ni3-Ni4 pair in a spin state of S = 1/2. The N6(11+) compounds show relatively strong antiferromagnetic coupling of about 60 cm(-1) between the terminal and the central dinickel ions.

Journal Article↗

PubMed2002

Phosphorylation-dependent interaction of the synaptic vesicle proteins cysteine string protein and synaptotagmin I.

The secretory vesicle cysteine string proteins (CSPs) are members of the DnaJ family of chaperones, and function at late stages of Ca2+-regulated exocytosis by an unknown mechanism. To determine novel binding partners of CSPs, we employed a pull-down strategy from purified rat brain membrane or cytosolic proteins using recombinant hexahistidine-tagged (His(6)-)CSP. Western blotting of the CSP-binding proteins identified synaptotagmin I to be a putative binding partner. Furthermore, pull-down assays using cAMP-dependent protein kinase (PKA)-phosphorylated CSP recovered significantly less synaptotagmin. Complexes containing CSP and synaptotagmin were immunoprecipitated from rat brain membranes, further suggesting that these proteins interact in vivo. Binding assays in vitro using recombinant proteins confirmed a direct interaction between the two proteins and demonstrated that the PKA-phosphorylated form of CSP binds synaptotagmin with approximately an order of magnitude lower affinity than the non-phosphorylated form. Genetic studies have implicated each of these proteins in the Ca2+-dependency of exocytosis and, since CSP does not bind Ca2+, this novel interaction might explain the Ca2+-dependent actions of CSP.

Animals↗

PubMed1997

Activation of the ATPase activity of heat-shock proteins Hsc70/Hsp70 by cysteine-string protein.

DnaJ proteins are characterized by a 'J' domain which is homologous to a region of the Escherichia coli protein DnaJ. DnaJ has been shown to interact with the chaperone protein DnaK, and a number of eukaryotic DnaJ-like proteins have been found to interact with the 70 kDa heat-shock protein/70 kDa heat-shock cognate protein (Hsp70/Hsc70), the eukaryotic homologues of DnaK. Cysteine-string proteins (Csps) are believed to function in calcium-stimulated exocytosis and in this paper we describe a specific ATP-dependent interaction between a Csp (Csp1) and Hsc70/Hsp70. We also show that Csp1 can stimulate the ATPase activity of both Hsc70 and Hsp70 several-fold. Furthermore, we demonstrate that Csp2, a Csp variant found in adrenal chromaffin cells, can enhance the ATPase activity of Hsc70 to a similar extent as Csp1, whereas Csp(137-198), a truncated protein lacking the 'J' domain of Csp1 is unable to stimulate the ATPase activity of Hsc70. This suggests that the functions of Csp1 and Csp2 must differ in some aspect other than interaction with Hsc70. This study is also important from a general view of DnaJ/Hsc70 interactions, as Csps lack a G/F-rich region which has been suggested to be essential for activation of the ATPase activity of DnaK by DnaJ. Thus, this work would imply that a G/F-rich region is not an essential feature of DnaJ proteins for stimulation of the ATPase activity of Hsp70 proteins.

Adenosine Triphosphatases↗

PubMed1987

Movement timing in deaf and hearing speakers: comparison of phonetically heterogeneous syllable strings.

We review evidence suggesting that deaf speakers do not move their articulators toward the following open posture throughout closure and report results from a preliminary cinefluorographic study. Two prelingually deaf and two hearing speakers produced two different strings of alternating heterogeneous monosyllables as though speaking in time with a metronome (the so-called P-center task). Events traditionally associated with vowel production appeared evenly timed throughout the productions, and, in general, the deaf speakers performed similarly to the hearing speakers. We relate the results to Fowler's (1983) interpretation of the P-center phenomenon as an indicant of continuous vowel production.

Adult↗

PubMed1994

Antipeptide antibodies against a Torpedo cysteine-string protein.

An antipeptide antiserum was raised against the C-terminal undecapeptide of a Torpedo cysteine-string protein (csp), a putative subunit or modulator of presynaptic calcium channels. This antiserum was shown to identify selectively the 27-kDa in vitro translation product of the csp cRNA both by immunoprecipitation and on immunoblots. When affinity-purified anti-csp antibodies were used to probe immunoblots of membrane proteins from Torpedo electric organ or liver, specific immunoreactivity was detected only in electric organ. This immunoreactivity was associated principally with a single protein species of about 34 kDa. These results indicate that csp immunoreactivity is detectably expressed in electroplax, a heavily innervated tissue, but not in liver, which should have an appreciably lower abundance of presynaptic calcium channel proteins. Moreover, the increased relative molecular mass of csp in electric organ (compared with in vitro translated material) implies that csp is posttranslationally modified. Finally, immunoblot analysis of either intact, alkali-treated, or solubilized membrane fractions of electric organ reveals that csp is predominantly a membrane protein.

Amino Acid Sequence↗

PubMed2000

Lithium ions enhance cysteine string protein gene expression in vivo and in vitro.

Lithium is a well established pharmacotherapy for the treatment of recurrent manic-depressive illness. However, the mechanism by which lithium exerts its therapeutic action remains elusive. Here we report that lithium at 1 mM significantly increased the expression of cysteine string proteins (CSPs) in a pheochromocytoma cell line (PC12 cells) differentiated by nerve growth factor. These cells concomitantly exhibited increased expression of CSPs in their cell bodies and boutons. Enhanced CSP expression was also observed in the brain of rats fed a lithium-containing diet, which elevated serum lithium to a therapeutically relevant concentration of approximately 1.0 mM. However, both in vitro and in vivo, the expression of another synaptic vesicle protein, synaptophysin, and the t-SNARE, synaptosomal-associated protein of 25 kDa (SNAP-25), was not significantly altered by lithium. These observations indicate that lithium-induced changes of CSP gene expression may contribute to the therapeutic efficacy of this monovalent cation.

Animals↗

PubMed2005

Purse-string platysmaplasty: the third dimension for neck contouring.

Techniques and concepts for treatment of the aging neck have been evolving since the late 1960s and rely on two-dimensional anterior approximation with lateral imbrication of the platysma with or without submental fat reduction, However, the medial approximation can sometimes give a "boxy" appearance to the anterior neck, especially if anterior shifting of the platysma recurs after platysmaplasty with laxity redeveloping in this midline location. The "purse-string" platysmaplasty (PSP) is a new concept in neck contouring that facilitates an enhanced definition for the cervicomandibular transition to better simulate the well-defined contour of this transition that is present in youth. It aids in the contouring of difficult poorly defined necks and in male patients. The PSP adds a "third dimension" to neck recontouring by invaginating the platysma with a plication suture and pexing the platysma, without incising it, to deeper neck fascia with a technique that adds support and definition to the neck contour. The PSP can be performed in patients undergoing a full rhytidectomy as well as in individuals having isolated neck rejuvenation. The PSP is especially helpful in rejuvenating the male lower face and neck because of the relatively heavier deeper structures of the male neck and the need to enhance definition along the jawline.

Aged↗

PubMed1990

[Bowmaker's disease: an occupational disease in the manufacture of bows for string instruments].

Inhalation of wood dust from the tropical tree Fernambouc (Caesalpinia echinata) in the manufacture of string bows can cause characteristic symptoms (bow-makers disease). To confirm this observation, 177 bow-makers, working in a village near Erlangen (Bavaria), the centre of this manufacture, filled in questionnaires. Of these 36 worked with Fernambouc, 141 with other types of wood. Twelve out of these 36 suffered from dyspnoea, cough, sneezing impulses, tearing and coryza, which would disappear quickly at weekends and during holidays. 14 of those working with other types of wood merely had sneezing, irritation of the mucosa, a few also cough, dyspnoea and tearing. Extracts of Fernambouc splinters were made for serological testing. However, neither experimental sensitization in animals nor skin tests in the twelve gave allergic reactions. A 51-year-old woman with long-standing bronchial asthma developed dyspnoea five minutes after an inhalative provocation test; a prick test brought about slight infiltration. Thus, no evidence of an allergic origin of symptoms from Fernambouc dust inhalation could be elicited.

Asthma↗

PubMed1991

Symbol dynamic maps of spatial-temporal chaotic vibrations in a string of impact oscillators.

Spatially complex, temporally chaotic dynamics of N-coupled impact oscillators connected by a string are studied experimentally using a discrete measure of the motion for each of the masses. For N=8, a binary assignment of symbols, corresponding to whether or not the masses impact an amplitude constraint, is used to code the spatial pattern as a binary number and to store its change in time in a computer. A spatial pattern return map is then used to observe the change in spatial patterns with time. Bifurcations in spatial impact patterns are observed in this experiment. An entropy measure is also used to characterize the dynamics. Numerical simulation shows behavior similar to the experimental system.

Journal Article↗

PubMed2005

Rings-on-a-string chain structure in DNA.

Using fluorescence microscopy (FM), which permits the observation of single molecules, we found that a pearling structure is generated on a single long DNA molecule upon the addition of a gemini (dimeric) surfactant. This pearling structure was further investigated by performing atomic force microscopy measurements on the same DNA molecules as observed by FM. These observations revealed that the pearling structure is composed of many rings that are interconnected by elongated coil parts along a single DNA molecule, i.e., rings-on-a-string structure. The mechanism of the formation of such an intrachain segregated structure in terms of microphase separation on a single polyelectrolyte chain is discussed.

Bacteriophage T4↗

PubMed2005

Transition probabilities of a string oscillator subject to impulsive collisions with a heavy mass point.

Impulsive linear collisions between a string oscillator (a one-dimensional particle in a box) and a mass point are studied quantum mechanically. In the limit of a very heavy mass point (which corresponds classically to many collisions during a single encounter) the transition probabilities are determined exactly. The result permits a discussion of the mixed quantum-classical regime where the collider becomes almost classical while the oscillator remains quantum mechanical. While the average transition probabilities P(m-->n) are well reproduced by the Ehrenfest mean-field approximation, the prediction for the superimposed high-frequency resonance structure is qualitatively wrong for a genuine quantum oscillator. Only if the oscillator is also almost classical and if (m-n)2 square root(mu) << m, where mu is the mass ratio collider/oscillator, this structure is correctly predicted by the Ehrenfest approximation.

Chemistry, Physical↗

PubMed2006

Quadratic string method for determining the minimum-energy path based on multiobjective optimization.

Based on a multiobjective optimization framework, we develop a new quadratic string method for finding the minimum-energy path. In the method, each point on the minimum-energy path is minimized by integration in the descent direction perpendicular to path. Each local integration is done on a quadratic surface approximated by a damped Broyden-Fletcher-Goldfarb-Shanno updated Hessian, allowing the algorithm to take many steps between energy and gradient calls. The integration is performed with an adaptive step-size solver, which is restricted in length to the trust radius of the approximate Hessian. The full algorithm is shown to be capable of practical superlinear convergence, in contrast to the linear convergence of other methods. The method also eliminates the need for predetermining such parameters as step size and spring constants, and is applicable to reactions with multiple barriers. The effectiveness of this method is demonstrated for the Muller-Brown potential, a seven-atom Lennard-Jones cluster, and the enolation of acetaldehyde to vinyl alcohol.

Acetaldehyde↗

PubMed2006

On the formation of rings-on-a-string conformations in a single polyelectrolyte chain: A possible scenario.

Recent single-molecular observations have revealed that a single giant DNA molecule assumes (micro) phase separated structures upon the addition of condensing agents. Electron and atomic force microscopy have clearly shown the coexistence of ordered tori and disordered coil structures within a single DNA molecule. Motivated by these experimental findings, we theoretically investigated the collapse transition of a single polyelectrolyte chain driven by the addition of condensing guest molecules. We found that the transition behavior critically depends on the degree of the surviving charge inside the torus. When the torus is charged, even slightly, "rings-on-a-string" structures are expected for a sufficiently long chain, owing to the combinational entropy of segment state distribution along the chain and the unique property of the stability of charged torus.

Journal Article↗