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Results for “Inbreeding Depression”

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PubMed1993

Spearman's g: links between psychometrics and biology.

Individual differences with respect to diverse tests of mental abilities that range in complexity from simple reaction time to abstract reasoning are all positively correlated in the population. The total covariance among all such tests can be analyzed into a number of uncorrelated components of variance, or factors, that, in terms of their generality, are hierarchical, with the most general factor, or g, at the apex. This g factor is common to every type of cognitive performance, whatever other ability factors may be involved (e.g., verbal, spatial, numerical, musical, etc.), and is the crucial factor in most tests' practical validity. Its correlations with various tests' heritability, inbreeding depression, heterosis, average evoked potentials, brain metabolism, and many other physical correlates indicate that as a product of evolution it is profoundly enmeshed with many organismic variables. A theory based on empirical evidence links g to neural processes involved in the speed and efficiency of information processing.

Animals↗

PubMed1979

An attempt to select for increased longevity in Drosophila melanogaster.

Eight generations of selection towards a higher longevity were made in a wild strain of Drosophila melanogaster. Two control lines were also observed. Absolutely no response to selection was obtained whilst a major increase in longevity occurred between F2 and F4 in the three lines under observation. It is shown that the major increase in longevity is due neither to genetic drift, nor to changes in classical environmental conditions. The absence of response to selection is demonstrated to be due neither to a too low selection differential, nor to the absence of genetic variability in the strain, nor to inaccuracy in the measurements, nor to recurrent reproduction at an old age. The impossibility to select towards a higher longevity and the total absence of relation between parental and offspring longevities demonstrate that the very large phenotypic variability displayed by longevity in wild strains of D. melanogaster does not depend on a precise set of specific genes or polygenes with additive action. The results are briefly discussed in relation with inbreeding depression and heterosis for longevity and with similar results obtained in experiments of selection for duration of development.

Animals↗

PubMed2004

Effect of inbreeding on Wechsler intelligence test scores among North Indian children.

The effects of inbreeding in humans on the intelligence has been investigated in the present study of offspring of second cousin matings (F=0.0156, n=138 male, 132 female), first cousins once removed (F=0.03125, n=148 male, 138 female), first cousins (F=0.0625, n=161 male, 151 female), and unrelated (F=0, n=194 male, 182 female) among North Indian Muslims. The Weschler Intelligence Scale for Children (WISC-R)-74 was given to the children in the both groups. An overall significant (p<0.001) reduction of means has been observed in inbred series. The results of this study confirm the appreciable inbreeding depression especially among the offspring of first cousins.

Child↗

PubMedDate not supplied

Assessing the contribution of breeds to genetic diversity in conservation schemes.

The quantitative assessment of genetic diversity within and between populations is important for decision making in genetic conservation plans. In this paper we define the genetic diversity of a set of populations, S, as the maximum genetic variance that can be obtained in a random mating population that is bred from the set of populations S. First we calculated the relative contribution of populations to a core set of populations in which the overlap of genetic diversity was minimised. This implies that the mean kinship in the core set should be minimal. The above definition of diversity differs from Weitzman diversity in that it attempts to conserve the founder population (and thus minimises the loss of alleles), whereas Weitzman diversity favours the conservation of many inbred lines. The former is preferred in species where inbred lines suffer from inbreeding depression. The application of the method is illustrated by an example involving 45 Dutch poultry breeds. The calculations used were easy to implement and not computer intensive. The method gave a ranking of breeds according to their contributions to genetic diversity. Losses in genetic diversity ranged from 2.1% to 4.5% for different subsets relative to the entire set of breeds, while the loss of founder genome equivalents ranged from 22.9% to 39.3%.

Animals↗

PubMed1998

Inferring Deleterious-Mutation Parameters in Natural Daphnia Populations.

Deng and Lynch (1, 2) proposed to characterize deleterious genomic mutations from changes in the mean and genetic variance of fitness traits upon selfing in outcrossing populations. Such observations can be readily acquired in cyclical parthenogens. Selfing and life-table experiments were performed for two such Daphnia populations. A significant inbreeding depression and an increase of genetic variance for all traits analyzed were observed. Deng and Lynch's (2) procedures were employed to estimate the genomic mutation rate (U), mean dominance coefficient (), mean selection coefficient (), and scaled genomic mutational variance (). On average, and (^ indicates an estimate) are 0.84, 0.30, 0.14 and 4.6E-4 respectively. For the true values, the and are lower bounds, and and upper bounds.

Journal Article↗

PubMed2000

Determination of the complete nucleotide sequence and haplotypes in the D-loop region of the mitochondrial genome in the oriental white stork, Ciconia boyciana.

The complete nucleotide sequence of the mitochondrial genome of the Oriental white stork, Ciconia boyciana, has been determined from captive storks by a novel method incorporating Long PCR and shotgun sequencing. 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes were identified as in other vertebrate mitochondrial genomes. The position and direction of the NADH6 and tRNA-Glu genes were the same as previously reported for avian mitochondrial genomes. A 71 bp direct repeat and long CAAA repeat sequences were found at the 3' end of the D-loop region, together with SCB-1, SCB-2, SCB-3, and three TAS sequences. Direct sequencing of the PCR fragments in the D-loop region in 26 captive Oriental white storks originating from Japan, China, and Russia revealed nucleotide differences at 18 sites along 1,248 bp, and a total of nine haplotypes have been identified. It was found that one pair of individuals in the Japanese captive breeding program were of the same haplotype, suggesting that they were caught from the same nest. The pair has since been dissolved in consideration of the possibility of inbreeding depression.

Animals↗

PubMed2006

Molecular-level variation affects population growth in a butterfly metapopulation.

The dynamics of natural populations are thought to be dominated by demographic and environmental processes with little influence of intraspecific genetic variation and natural selection, apart from inbreeding depression possibly reducing population growth in small populations. Here we analyse hundreds of well-characterised local populations in a large metapopulation of the Glanville fritillary butterfly (Melitaea cinxia), which persists in a balance between stochastic local extinctions and recolonisations in a network of 4,000 discrete habitat patches. We show that the allelic composition of the glycolytic enzyme phosphoglucose isomerase (Pgi) has a significant effect on the growth of local populations, consistent with previously reported effects of allelic variation on flight metabolic performance and fecundity in the Glanville fritillary and Colias butterflies. The strength and the sign of the molecular effect on population growth are sensitive to the ecological context (the area and spatial connectivity of the habitat patches), which affects genotype-specific gene flow and the influence of migration on the dynamics of local populations. The biological significance of the results for Pgi is underscored by lack of any association between population growth and allelic variation at six other loci typed in the same material. In demonstrating, to our knowledge for the first time, that molecular variation in a candidate gene affects population growth, this study challenges the perception that differential performance of individual genotypes, leading to differential fitness, is irrelevant to population dynamics. These results also demonstrate that the spatial configuration of habitat and spatial dynamics of populations contribute to maintenance of Pgi polymorphism in this species.

Alleles↗

PubMed1979

Cytogenetics and reproduction of sheep with multiple centric fusions (Robertsonian translocations).

The significance of centric fusions (Robertsonian translocations) in domestic animals, with special reference to sheep, is reviewed. The mating is described of a further 856 ewes with either a normal chromosome number 2n = 54 or carrying one or more of the three different translocations (centric fusions) t1, t2 and t3 in various heterozygous and homozygous arrangements. Rams which were used in the matings were homozygous for one of the translocation chromosomes (2n = 52), double heterozygotes (2n = 52), triple heterozygotes (2n = 51) or were carriers of 4 translocation chromosomes (2n = 50) and 5 translocation chromosomes (2n = 49). A remarkably even distribution of segregation products was recorded in the progeny of all combinations of translocation ewes x translocation rams in those groups in which sufficient animals were available for statistical analysis. Forty-eight chromosomally different groups of animals were mated. Further, the overall fertility of the translocation sheep, measured by conception rate to first service, lambing percentage and number of ewes which did not breed a lamb, was not significantly different from New Zealand national sheep breeding data. In some groups the poorer reproductive performance could be explained by the age structure of the flock and inbreeding depression, which probably affected the performance of some animals. Sheep with progressively decreasing chromosome numbers, due to centric fusion, 2n = 50, 2n = 49 and 2n = 48, are reported. The 2n = 48 category represents a triple homozygous ewe and a triple homozygous ram and is the first report of the viable evolution of such domestic animals. Less than 1% of phenotypically abnormal lambs were recorded in a total of 1995 progeny born over 10 years. It is now considered that there is little or no evidence to suggest that centric fusions in a variety of combinations affect the total productive fitness of domestic sheep. It is suggested that future research should be more actively directed to understanding their genetic significance.

Animals↗

PubMed2005

Widespread correlations between dominance and homozygous effects of mutations: implications for theories of dominance.

The dominance of deleterious mutations has important consequences for phenomena such as inbreeding depression, the evolution of diploidy, and levels of natural genetic variation. Kacser and Burns' metabolic theory provides a paradigmatic explanation for why most large-effect mutations are recessive. According to the metabolic theory, the recessivity of large-effect mutations is a consequence of a diminishing-returns relationship between flux through a metabolic pathway and enzymatic activity at any step in the pathway, which in turn is an inevitable consequence of long metabolic pathways. A major line of support for this theory was the demonstration of a negative correlation between homozygous effects and dominance of mutations in Drosophila, consistent with a central prediction of the metabolic theory. Using data on gene deletions in yeast, we show that a negative correlation between homozygous effects and dominance of mutations exists for all major categories of genes analyzed, not just those encoding enzymes. The relationship between dominance and homozygous effects is similar for duplicated and single-copy genes and for genes whose products are members of protein complexes and those that are not. A complete explanation of dominance therefore requires either a generalization of Kacser and Burns' theory to nonenzyme genes or a new theory.

Gene Deletion↗

PubMed2005

Behavioral degradation under mutation accumulation in Caenorhabditis elegans.

Spontaneous mutations play a fundamental role in the maintenance of genetic variation in natural populations, the nature of inbreeding depression, the evolution of sexual reproduction, and the conservation of endangered species. Using long-term mutation-accumulation lines of the nematode Caenorhabditis elegans, we estimate the rate and magnitude of mutational effects for a suite of behaviors characterizing individual chemosensory responses to a repellant stimulus. In accordance with evidence that the vast majority of mutations are deleterious, we find that behavioral responses degrade over time as a result of spontaneous mutation accumulation. The rate of mutation for behavioral traits is roughly of the same order or slightly smaller than those previously estimated for reproductive traits and the average size of the mutational effects is also comparable. These results have important implications for the maintenance of genetic variation for behavior in natural populations as well as for expectations for behavioral change within endangered species and captive populations.

Animals↗

PubMed2001

Parasites and the evolution of self-fertilization.

Assuming all else is equal, an allele for selfing should spread when rare in an outcrossing population and rapidly reach fixation. Such an allele will not spread, however, if self-fertilization results in inbreeding depression so severe that the fitness of selfed offspring is less that half that of outcrossed offspring. Here we consider an ecological force that may also counter the spread of a selfing allele: coevolution with parasites. Computer simulations were conducted for four different genetic models governing the details of infection. Within each of these models, we varied both the level of selfing in the parasite and the level of male-gamete discounting in the host (i.e., the reduction in outcrossing fitness through male function due to the selfing allele). We then sought the equilibrium level of host selfing under the different conditions. The results show that, over a wide range of conditions, parasites can select for host reproductive strategies in which both selfed and outcrossed progeny are produced (mixed mating). In addition, mixed mating, where it exits, tends to be biased toward selfing.

Alleles↗

PubMed2006

Evolution under relaxed sexual conflict in the bulb mite Rhizoglyphus robini.

The experimental evolution under different levels of sexual conflict have been used to demonstrate antagonistic coevolution in muscids, but among other taxa a similar approach has not been employed. Here, we describe the results of 37 generations of evolution under either experimentally enforced monogamy or polygamy in the bulb mite Rhizoglyphus robini. Three replicates were maintained for each treatment. Monogamy makes male and female interests congruent; thus selection is expected to decrease harmfulness of males to their partners. Our results were consistent with this prediction in that females from monogamous lines achieved lower fecundity when housed with males from polygamous lines. Fecundity of polygamous females was not affected by mating system under which their partners evolved, which suggests that they were more resistant to male-induced harm. As predicted by the antagonistic coevolution hypothesis, the decrease in harmfulness of monogamous males was accompanied by a decline in reproductive competitiveness. In contrast, female fecundity and embryonic viability, which were not expected to be correlated with male harmfulness, did not differ between monogamous and polygamous lines. None of the fitness components assayed differed between individuals obtained from crosses between parents from the same line and those obtained from crosses between parents from different lines within the same mating system. This indicates that inbreeding depression did not confound our results. However, interpretation of our results is complicated by the fact that both males and females from monogamous lines evolved smaller body size compared to individuals from polygamous lines. Although a decrease in reproductive performance of males from monogamous lines was still significant when body size was taken into account, we were not able to separate the effects of male body size and mating system in their influence on fecundity of their female partners.

Animals↗

PubMed2006

Animals mix it up too: the distribution of self-fertilization among hermaphroditic animals.

Excluding insects, hermaphroditism occurs in about one-third of animal species, providing numerous opportunities for the evolution of selfing. Here we provide an overview of reproductive traits in hermaphroditic animal species, review the distribution of selfing rates in animals, and test for ecological correlates of selfing. Our dataset (1342 selfing-rate estimates for 142 species) is 97% based on estimates derived from the analysis of population structure (F(IS)-estimates) using genetic markers. The distribution of selfing is slightly U-shaped and differs significantly from the more strongly U-shaped plant distribution with 47% of animal t-estimates being intermediate (falling between 0.2 and 0.8) compared to 42% for plants. The influence of several factors on the distribution of selfing rates was explored (e.g., number of populations studied per species, habitat, coloniality, sessility, or fertilization type), none of which significantly affect the distribution. Our results suggest that genetic forces might contribute to the evolution of self-fertilization to the same extent in animals and plants, although the high proportion of intermediate outcrossing suggests a significant role of ecological factors (e.g., reproductive assurance) in animals. However, we caution that the distribution of selfing rates in animals is affected by various factors that might bias F(IS)-estimates, including phylogenetic underrepresentation of highly selfing and outcrossing species, various genotyping errors (e.g., null alleles) and inbreeding depression. This highlights the necessity of obtaining better estimates of selfing for hermaphroditic animals, such as genotyping progeny arrays, as in plants.

Animals↗

PubMed2002

Recurrent selection for corn earworm (Lepidoptera: Noctuidae) resistance in three closely related corn southern synthetics.

Plant resistance offers a good alternative to pesticides for protecting corn (Zea mays L.) from attack by corn earworm, Helicoverpa zea (Boddie). The GT-CEW-RS8 synthetic is a breeding population with some resistance to corn earworm, but based on variability for this trait, further improvement was possible in this population. S1 recurrent selection for corn earworm resistance was conducted to improve three synthetics derived from GT-CEW-RS8. The objective of this research was to study the effectiveness of these selection programs to increase insect resistance and maintain agronomic performance. Cycles of selection for each population were evaluated under four environments. Significant gains in resistance were realized, but all three synthetics derived from GT-CEW-RS8 showed a negative response for yield. However, yield losses were not very dramatic for 66RM4 and inbreeding depression would not affect the yield performance in hybrid combination. Selection for yield done simultaneously with selection for reducing ear damage by corn earworm and husk tightness could assist in avoiding decreased yield.

Animals↗

PubMed2003

Egg size variability in trematodes: test of the bet-hedging hypothesis.

The hypothesis according to which egg size variability in hermaphroditic parasites results from bet-hedging was investigated in a comparative analysis using trematodes as a model. We hypothesized that the species reproducing mainly by self-fertilization should produce smaller eggs than those species that regularly practice cross-fertilization. Indeed, because self-fertilization is usually associated with inbreeding depression, selection should favor individuals spreading the risk of genetically disturbed development across more but smaller eggs, instead of producing fewer eggs, each possessing a large resource supply, of which many may fail to develop because of genetic deficiencies. On the basis of earlier theoretical and empirical studies, we assumed that the ratio length of testis-length of ovary positively correlates with the mating group size and, hence, with opportunities for cross-fertilization. In accordance with the bet-hedging hypothesis, we found, across trematode species, a positive relationship between this ratio and the mean egg volume produced by adults. This result was, however, observed only for the trematodes infecting birds and not for the species infecting fishes and mammals. In addition, once the influence of trematode phylogeny was taken into account, there was no significant trend, suggesting that phylogenetic legacies played a large role in generating the previous signal. Experimental tests of the bet-hedging hypothesis will be necessary to clarify the matter.

Animals↗

PubMed1991

Breed effects and heterosis in advanced generations of composite populations for preweaning traits of beef cattle.

The effects of heterosis for gestation length, dystocia, calf survival, birth weight, 200-d weight, and ADG from birth to weaning were evaluated in F1, F2, and combined F3 and F4 generations in three composite populations. Breed effects were evaluated for the nine parental breeds (Red Poll, Hereford, Angus, Limousin, Braunvieh, Pinzgauer, Gelbvieh, Simmental, and Charolais) that contributed to the three composite populations. Breed effects were significant for all traits evaluated except survival at birth. The large differences among breeds in additive direct and additive maternal genetic effects offer a great opportunity to use the genetic differences among breeds to achieve and maintain optimum additive genetic (breed) composition to match genetic resources to a wide range of production-marketing ecosystems. There was no heterosis for gestation length. Mean heterosis for dystocia was significant estimated in F1 but not in F2 or in the combined F3 and F4 generations. Mean heterosis was not significant in any generation for survival at birth, to 72 h, and to weaning for the F1 generation; mean heterosis was significant for survival to weaning for the F2 generation and approached significance (P = .06) for the combined F3 and F4 generations. Mean heterosis over all composite populations and heterosis for each composite population were significant in all generations for weight at birth and at 200 d and for ADG from birth to weaning. Retained heterosis was not less than expected from retained heterozygosity in composite populations for the traits evaluated. These results suggest that heterosis for these traits likely is due to dominance effects and, thus, can be attributed to the recovery of accumulated inbreeding depression in the parental breeds.

Analysis of Variance↗

PubMed1993

Challenges and opportunities for integrating genetically modified animals into traditional animal breeding plans.

Techniques have been developed to introduce specific genes from one species into the germplasm of another, including livestock. This paper reviews reports on evaluation, selection, and breeding procedures for introduction and multiplication of transgenes in breeding populations of livestock. Before transgenes are introduced and multiplied in commercial breeding populations, it is necessary to test transgenics extensively for both favorable and unfavorable transgene effects. Parent stock used to produce transgenic founder animals should be selected to excel in polygenic breeding value for economically important traits, especially if founder animals or their sons are to be used directly by AI in commercial populations. However, polygenic breeding value of founder transgenic animals and inbreeding depression are of negligible importance if a transgene is introgressed into a selection nucleus population from three or four generations of backcrossing. Transgenic development should be economically viable for traits with major effects on net merit, especially in the dairy industry, where transgenic sires can be used extensively by AI. A minimum effect of about 10% of the mean (or one phenotypic standard deviation) is a reasonable approximation of the minimum transgene effect that would be necessary to justify introgression into a nucleus swine population. A transgene effect of 10 to 20% of the mean would be required for most economic traits in beef cattle.

Animals↗

PubMed1981

Weaning trait comparisons among inbred lines and selected noninbred and randomly bred control groups of Rambouillet, Targhee and Columbia sheep.

A program of inbreeding with concurrent selection was followed in the development of 26 Rambouiller, 20 Targhee and 10 Columbia inbred lines for subsequent linecross and topcross performance evaluation. Inbreeding coefficients averaged 30.4, 28.5 and 29.8% for the three breeds, respectively, at the end of the study. Selected noninbred control and unselected randomly bred control groups were maintained for each breed. Weaning trait data were evaluated for 1,332 Rambouillet, 1,557 Targhee and 1,049 Columbia inbred line and control group lambs during the final 2 years of inbreeding. Results showed a slight response to selection within inbred lines for the more highly heritable traits and some degree of genetic divergence among lines at the current levels of inbreeding. In general, the traits most sensitive to inbreeding depression were those more closely associated with fitness and those of low to moderate heritability. Even though a fairly large number of lines was developed, only a few inbred lines were superior (P less than .05) to their respective selected control groups - and usually for only one trait. Significantly, not a single Rambouillet, Targhee or Columbia inbred line was superior (P less than .05) in overall merit to its appropriate selected control group. Unselected control group means tended to be slightly superior to means for most inbred lines for traits of low heritability (weaning weight, body type and body condition) and inferior for more highly heritable traits (staple length, face cover, and neck folds). Notably, only six of a total of 56 inbred lines were superior (P less than .05) in overall merit to their appropriate unselected control groups.

Animals↗