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Results for “ecological speciation”

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PubMed1996

Mitochondrial phylogeography of rock-dwelling cichlid fishes reveals evolutionary influence of historical lake level fluctuations of Lake Tanganyika, Africa.

The East African Lakes Tanganyika, Malawi and Victoria each harbour hundreds of endemic invertebrate and vertebrate species. Inferences about the ecological and evolutionary processes responsible for the origin of these species flocks will only be possible when they are made within historical and comparative frameworks. Specifically, the relative importance of intrinsic characteristics and extrinsic factors may offer information about the processes that drive diversification and speciation in these species. We investigated the sequence variation of a segment of the mitochondrial DNA control region of 32 populations representing all four nominal species in the three genera of eretmodine cichlids from Lake Tanganyika. Based on a phylogenetic analysis of these data we attempted to evaluate the importance of major lake level fluctuations on patterns of intralacustrine speciation. The geography of genetic variation reveals a high degree of within-lake endemism among genetically well-separated lineages distributed along the inferred shore lines of three historically intermittent lake basins. Seismic data indicate that extreme lowering of water levels in the Pleistocene caused the single Lake Tanganyika basin to split into three isolated ones. The strong phylogeographic structure of the Eretmodini, and the observation that some closely related populations occur on opposite shores of the lake, agree with this geological scenario. The three-clade-three-basin phylogeographic pattern was repeated twice within this tribe of cichlids. The phylogeographic pattern of eretmodine cichlids suggests that major fluctuations in the level of the lake have been important in shaping their adaptive radiation and speciation. The mitochondrially defined clades are in conflict with the current taxonomy of the group and suggest that there has been convergent evolution in trophic morphology, particularly in the shapes of oral teeth, taxonomically the most diagnostic characters of the three genera.

Age Factors↗

PubMed2004

Mouse biodiversity in the genomic era.

Comparative genomics has developed by comparison of distantly related genomes, for which the link between the reported evolutionary changes and species development/physiology/ecology is not obvious. It is argued that the mouse (genus Mus) is an optimal model for microevolutionary genomics in vertebrates. This is because the mouse genome sequence, physical and genetic map have been completed, because mouse genetics, morpho-anatomy, pathology, behavior and ecology are well-studied, and because the Mus genus is a diverse, well- documented taxon, allowing comparative studies at the level of individual, population, subspecies, and species. The potential of the interaction between mouse genome and mouse biodiversity is illustrated by recent studies of speciation in the house mouse Mus musculus, and studies about the evolution of isochores, the peculiar pattern of GC-content variation across mammalian genomes.

Animals↗

PubMed2005

Rapid cladogenesis in marine fishes revisited.

Lineages that underwent rapid cladogenesis are attractive systems for the study of mechanisms underlying taxonomic, ecological, morphological, and behavioral diversification. Recently developed statistical methods provide insights into historical patterns of diversity and allow distinguishing bursts of cladogenesis from stochastic background rates in the presence of confounding factors such as extinction and incomplete taxon sampling. Here, we compare the dynamics of speciation in several marine fish lineages some of which were previously proposed to have undergone significant changes of cladogenesis through time. We tested for evidence of episodes of rapid cladogenesis using the constant rate and Monte Carlo constant rate tests that are robust to incomplete taxon sampling. These tests employ the statistic gamma to measure the relative position of internal node in a chronogram. For the first time, we conducted a comparative analysis to address the behavior of the statistic under different chronogram-constructing methods (Langley-Fitch, nonparametric rate smoothing, and penalized likelihood). Although estimates of gamma sometimes differ widely among methods, acceptance or rejection of the constant rate model within a particular clade appears to be robust to the choice of method. Bursts of cladogenesis were detected in 14 of 34 studied datasets. Some of these were previously proposed to represent marine fish "radiations," whereas others are identified anew. Our results indicate that the wider application of tree shape methods that are able to detect significantly elevated rates of speciation is useful to more precisely define clades that underwent episodes of rapid cladogenesis in marine fish clades. Contrasting the patterns of phylogenetic diversification in marine fish lineages may facilitate the identification of common evolutionary trajectories versus idiosyncrasies, and ultimately help towards a better understanding of the factors and processes underlying speciation in the marine realm.

Animals↗

PubMed2006

Tempo, mode and phylogenetic associations of relative embryo size evolution in angiosperms.

Relative embryo size (E : S, the ratio of embryo to seed) is a key trait related to germination ecology and seed plant evolution. A small, underdeveloped embryo is a primitive feature of angiosperms, which has led to the hypothesis that an evolutionary trend towards increasing E : S has occurred. Here, I examine first the tempo and mode of E : S evolution in angiosperms; then I test for phylogenetic associations of E : S with traits hypothetically related to anagenetic (germination time) and cladogenetic (number of species per family and differential speciation) change, and finally I test the existence of a directional increasing trend in E : S. The analysis of the evolutionary tempo suggests that E : S changed very fast early in evolutionary time and remained stable later, which is consistent with early radiations and fits well with the history of angiosperms consisting of rapid spread associated with great diversification rates soon after their origin. E : S evolution in angiosperms has not followed a punctuational mode of evolution but a scaled-gradualism evolution in which stasis has occurred in longer branches of the phylogeny. An evolutionary trend towards increasing E : S has not been actively driven by anagenesis nor cladogenesis, although large E : S is associated with high levels of diversification (i.e. number of species per family). This rapid ecological diversification occurring in the early radiation probably produced an increasing phenotypic variance in the E : S. Because the ancestral embryo was so small, an increase in variance might have produced a passive trend towards the only direction allowed for the ancestral embryo to evolve. Thus, a passive diffusion away from a lower bound may explain the average increase in E : S.

Biological Evolution↗

PubMed2005

Micro-Mar: a database for dynamic representation of marine microbial biodiversity.

BACKGROUND: The cataloging of marine prokaryotic DNA sequences is a fundamental aspect for bioprospecting and also for the development of evolutionary and speciation models. However, large amount of DNA sequences used to quantify prokaryotic biodiversity requires proper tools for storing, managing and analyzing these data for research purposes. DESCRIPTION: The Micro-Mar database has been created to collect DNA diversity information from marine prokaryotes for biogeographical and ecological analyses. The database currently includes 11874 sequences corresponding to high resolution taxonomic genes (16S rRNA, ITS and 23S rRNA) and many other genes including CDS of marine prokaryotes together with available biogeographical and ecological information. CONCLUSION: The database aims to integrate molecular data and taxonomic affiliation with biogeographical and ecological features that will allow to have a dynamic representation of the marine microbial diversity embedded in a user friendly web interface. It is available online at http://egg.umh.es/micromar/.

Base Sequence↗

PubMed2005

[Identification and quantitation of selenocompounds in environment and organism].

Identify and quantify of diversity of selenocompounds in environment and organism is necessary to further understand and fairly evaluate the effects of selenium in clinical chemistry, nutrition, toxicity, environment and ecology. For the purpose, many state-of-the-art of analytical techniques are applied with the particular emphasis on the effective isolation, high-sensitively element-selective detection and the identification of the detected selenocompounds. Some practical and recently-developed methods, especially Se speciation by the combination of chromatography with mass spectrography, are here reviewed, which is of benefit to the deep researches on the selenium species in environmental samples and biomaterials.

Chromatography, High Pressure Liquid↗

PubMed2000

Molecular evolution, adaptive radiation, and geographic diversification in the amphiatlantic family Rapateaceae: evidence from ndhF sequences and morphology.

Rapateaceae (16 genera, approximately 100 species) is largely restricted to the tepuis and sandplains of the Guayana Shield in northern South America, with Maschalocephalus endemic to West Africa. The family has undergone extensive radiation in flower form, leaf shape, habit, and habitat. To analyze the evolution of these distributions and traits, we derived a molecular phylogeny for representatives of 14 genera, based on sequence variation in the chloroplast-encoded ndhF gene. The lowland subfamily Rapateoideae is paraphyletic and includes the largely montane subfamily Saxofridericioideae as a monophyletic subset. Overall, the morphological/anatomical data differ significantly from ndhF sequences in phylogenetic structure, but show a high degree of concordance with the molecular tree in three of four tribes. Branch lengths are consistent with the operation of a molecular clock. Maschalocephalus diverges only slightly from other Monotremae: it is the product of relatively recent, long-distance dispersal, not continental drift--only its habitat atop rifted, nutrient-poor sandstones is vicariant. The family appears to have originated approximately 65 Mya in inundated lowlands of the Guayana Shield, followed by: (1) wide geographic spread of lowland taxa along riverine corridors; (2) colonization of Amazonian white-sand savannas in the western Shield; (3) invasion of tepui habitats with frequent speciation, evolution of narrow endemism, and origin of hummingbird pollination in the western Shield; and (4) reinvasion of lowland white-sand savannas. The apparent timing of speciation in the Stegolepis alliance about 6-12 Mya occurred long after the tepuis began to be dissected from each other as the Atlantic rifted approximately 90 Mya. Given the narrow distributions of most montane taxa, this suggests that infrequent long-distance dispersal combined with vicariance accounts for speciation atop tepuis in the Stegolepis alliance.

Adaptation, Physiological↗

PubMed1975

Chromosomal identification of eight species of the subgenus Edwardsellum near and including Simulium (Edwardsellum) damnosum Theobald (Deptera: Simuliidae).

Examinations of the banding pattern of polytene chromsomes from larval salivary glands of the population in west Africa once thought to be a single species, Simulium (Edwardsellum) damnosum, revealed eight species all within the Nile subgroup of the complex. The following names were proposed: S. (E.) squamosum Enderlein, S. (E.) yahense n.sp., S. (E.) soubrense n.sp., S. (E.) sanctipauli n.sp., S. (E.) dieguerense n.sp., S. (E.) damnosum Theobald, S. (E.) sirbanum n.sp. and S. (E.) sudanense n.sp. Micromorphological characters by which there species are distinguished include interspecific inversions, different sets of intraspecific inversions, different sets of sex chromosomes and a few micromorphological features other than the banding pattern. By following the logical sequential development of interspecific inversions both a key to the species and a phylogenetic chart have been drawn up. Analysis of the proportions of alternate sequences for random distribution or not with ther Hardy-Weinberg equation have confirmed the existance of distinct populations, uncovered an example of incipient speciation and showed the existance of a genetic variant of S. damnosum which could possible colonize below dams.

Africa, Western↗

PubMed2006

Hybrid origin and differentiation of two tetraploid Achillea species in East Asia: molecular, morphological and ecogeographical evidence.

Achillea (Asteraceae-Anthemideae) offers classical models for speciation by hybridization and polyploidy. Here, we test the suspected allotetraploid origin of two species, Achillea alpina and Achillea wilsoniana between phylogenetically distinct lineages in East Asia. A total of 421 AFLP bands from 169 individuals and 19 populations of five 2x- and two 4x-species were obtained. The data set was analysed with a newly developed model that accounts for polyploidy and assumes lack of recombination between the parental chromosome sets (i.e. disomic inheritance). A. alpina and A. wilsoniana then appear to be allotetraploids between Achillea acuminata-2x (sect. Ptarmica) and Achillea asiatica-2x (sect. Achillea). The two 4x-species share 44% and 48% of their AFLP bands with A. acuminata-2x, and 39% and 38% with A. asiatica-2x, respectively. Eight plastid haplotypes (A-H) were detected by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analyses. A. alpina-4x and A. wilsoniana-4x share haplotype F only with A. asiatica-2x. This is consistent with the hybrid origin(s) involving the latter as the maternal ancestor. This result corroborates our previous DNA sequence data, where A. alpina-4x and A. wilsoniana-4x are also placed close to A. asiatica-2x. Morphology, ecology, and amplified fragment length polymorphism (AFLP) profiles of the two 2x-species are distinct, whereas the two 4x-species, grouped as A. alpina aggregate, form a nearly continuous link between them. Considering all evidence, this 4x-aggregate is regarded as the product of a hybridization between genetically distant 2x-ancestors limited to China and adjacent areas: one A. acuminata-like, and the other A. asiatica-like. The allopolyploid A. alpina agg. exhibits considerable morphological variation and ecological flexibility, and has expanded throughout eastern Asia and to northern North America, far beyond the ranges of their presumed 2x-ancestors.

Achillea↗

PubMed1990

Size, space, and adaptation in some subfossil lemurs from Madagascar.

We examine several explanations for the geographic pattern of body size variation exhibited by the subfossil lemur Archaeolemur. Part and partial correlation analysis and multiple regression analysis are applied in a stepwise, hierarchical fashion to help to determine variable interdependencies. Variance in site means for body size is best explained by the richness of the plant community and by several correlated climatic variables (bioclimatic zone and mean annual rainfall). Body size differentiation in Archaeolemur roughly mirrors patterns observed among many other Malagasy lemur species and subspecies groups. This consistency alone suggests that common ecological factors have strongly affected size differentiation in lemurs, most probably (as suggested by our correlation analyses) by uniformly influencing the productivity of their niches. Smaller individuals tend to inhabit arid regions, and larger individuals tend to inhabit wetter regions. The interplay between selective differentiation and allopatric speciation appears to have yielded the concordant pattern of size variation observed in Malagasy lemurs.

Adaptation, Biological↗

PubMed2006

Studies of threespine stickleback developmental evolution: progress and promise.

A promising route for understanding the origin and diversification of organismal form is through studies at the intersection of evolution and development (evo-devo). While much has been learned over the last two decades concerning macroevolutionary patterns of developmental change, a fundamental gap in the evo-devo synthesis is the integration of mathematical population and quantitative genetics with studies of how genetic variation in natural populations affects developmental processes. This micro-evo-devo synthesis requires model organisms with which to ask empirical questions. Threespine stickleback fish (Gasterosteus aculeatus), long a model for studying behavior, ecology and evolution, is emerging as a prominent model micro-evo-devo system. Research on stickleback over the last decade has begun to address the genetic basis of morphological variation and sex determination, and much of this work has important implications for understanding the genetics of speciation. In this paper we review recent threespine stickleback micro-evo-devo results, and outline the resources that have been developed to make this synthesis possible. The prospects for stickleback research to speed the micro-(and macro-) evo-devo syntheses are great, and this workhorse model system is well situated to continue contributing to our understanding of the generation of diversity in organismal form for many more decades.

Animals↗

PubMed1969

Genic variation in a natural population of Drosophila persimilis.

The understanding of the speciation process can best be achieved by a knowledge of the genic differences between two closely related species and the correlation of such differences with the characteristics which demarcate the two species. D. persimilis and D. pseudoobscura are two sibling species differing from each other in morphology, ecological preferences, and behavior, and no hybrids exist in nature. I have compared the genetic changes in 24 loci of 25 strains of D. persimilis from Mather, California, with those in D. pseudoobscura by the method of acrylamide gel electrophoresis. The proportion of the genome heterozygous in individual D. persimilis is 10.5 per cent, which is comparable to the heterogeneity found in similar D. pseudoobscura populations. I did not find any locus which is monomorphic or polymorphic for entirely different allele(s) than in D. pseudoobscura. The different frequencies of shared alleles in the two species can only be explained by selection acting differentially in these species, since the frequencies of different alleles at various loci in several populations of D. pseudoobscura are very similar or show a very stable pattern of association with the third chromosome gene arrangements.

Alleles↗

PubMed1995

Effect of weaning diet on the ecology of adherent lactobacilli in the gastrointestinal tract of the pig.

Sixteen pigs were included in an investigation of the effects of weaning and weaning diet on the ecology of adherent Lactobacillus species in the gastrointestinal tract. At 28 d of age four pigs were killed and were designated as the preweaning control (PW). Four pigs remained on the sow (Sow), four pigs were fed a corn-soy-lactose (CSL) diet, and the remaining four pigs were fed a corn-soy (CS) diet. Pigs from the latter three treatments were killed at 38 d of age. Tissue samples were taken from the pars esophagus, ileum, and cecum and the adherent lactobacilli were enumerated using Rogosa SL agar. Bacterial colonies were randomly selected from Rogosa SL agar plates and speciated using cell type, morphology, and substrate fermentation tests. The species data were used to calculate the Shannon, Simpson, and evenness diversity indices. Shannon and Simpson diversity index values when averaged across tissues were lower (P < .05) for PW than for postweaning treatments (Sow, CSL, and CS) and lower (P < .05) when pigs receiving sow's milk (PW and Sow) were compared with pigs receiving the dry diets (CSL and CS). The diversity of adherent Lactobacillus is altered by the form of the diet fed to weanling pigs, and statistical ecological methods provide a powerful way of analyzing the ecology of the gastrointestinal tract.

Animals↗

PubMed2004

Cooperate or speciate: new theory for the distribution of passerine birds.

In cooperatively breeding birds, adults often forego reproduction and help care for the offspring of others. A universal explanation for this mode of breeding has eluded evolutionary biologists, who have considered it to be a rare, and largely Australian, phenomenon. In a recent paper, Andrew Cockburn reports that the number of known cooperative breeders among oscine passerine birds has more than doubled since the last substantial review, published 16 years ago. Cooperative breeding is often the ancestral trait, and predominantly cooperative genera are species poor compared with their pair-breeding counterparts. Cockburn argues that speciation is less likely in cooperative clades, because the philopatric tendencies of individuals make them poor dispersers, colonizers and migrants. This new hypothesis helps explain the distribution and composition of migrant and island avifauna. However, a major challenge remains to reconcile the roles of phylogenetic history and current ecology in promoting cooperative behaviour.

Journal Article↗

PubMed2006

Incongruence between genetic and morphological diversity in Microcebus griseorufus of Beza Mahafaly.

BACKGROUND: The past decade has seen a remarkable increase in the number of recognized mouse lemur species (genus Microcebus). As recently as 1994, only two species of mouse lemur were recognized according to the rules of zoological nomenclature. That number has now climbed to as many as fifteen proposed species. Indeed, increases in recognized species diversity have also characterized other nocturnal primates--galagos, sportive lemurs, and tarsiers. Presumably, the movement relates more to a previous lack of information than it does to any recent proclivity for taxonomic splitting. Due to their nocturnal habits, one can hypothesize that mouse lemurs will show only minimal variation in pelage coloration as such variation should be inconsequential for the purposes of mate and/or species recognition. Even so, current species descriptions for nocturnal strepsirrhines place a good deal of emphasis on relatively fine distinctions in pelage coloration. RESULTS: Here, we report results from a multi-year study of mouse lemur populations from Beza Mahafaly in southern Madagascar. On the basis of morphological and pelage variation, we initially hypothesized the presence of up to three species of mouse lemurs occurring sympatrically at this locality, one of which appeared to be undescribed. Genetic analysis reveals definitively, however, that all three color morphs belong to a single recognized species, Microcebus griseorufus. Indeed, in some cases, the three color morphs can be characterized by identical mitochondrial haplotypes. CONCLUSION: Given these results, we conclude that investigators should always proceed with caution when using a single data source to identify novel species. A synthetic approach that combines morphological, genetic, geographic, and ecological data is most likely to reveal the true nature of species diversity.

Animals↗

PubMed1986

Preliminary observations on the influence of antibiotics on the ecology of Escherichia coli and the enterococci in the faecal flora of healthy young chickens.

Two separate replicated experiments are described. In the first the influence of oxytetracycline on the Escherichia coli flora was assessed, while in the second the effect of tylosin on the enterococci was investigated. In both experiments the administration of the antibiotic was associated with an increase in the average proportion of isolates resistant to the agent although in experiment 1 the agent had no apparent influence on either the total number of E. coli strains, differentiated by biotype and resistance pattern, or the number of 'new' strains per sampling. On the other hand significant differences were noted between the two replicates and also in relation to the age of the birds. In the second experiment fewer enterococcal strains were isolated from the birds dosed with tylosin but since fewer strains on average were isolated from the samples collected prior to dosing it is probable that this difference was due to factors other than the influence of the antibiotic. The enterococci were speciated and the two most commonly isolated were Streptococcus faecalis and S. faecium. The isolation rate of each was expressed as a proportion of the total number of enterococcal isolates per sample and when considered in relation to both dosing and the age of the bird the interaction dosing X age was statistically significant for both species. However, the differences did not appear particularly great and it was possible that the differences were of no practical importance from an ecological point of view.

Animals↗

PubMed2005

Community genomics in microbial ecology and evolution.

It is possible to reconstruct near-complete, and possibly complete, genomes of the dominant members of microbial communities from DNA that is extracted directly from the environment. Genome sequences from environmental samples capture the aggregate characteristics of the strain population from which they were derived. Comparison of the sequence data within and among natural populations can reveal the evolutionary processes that lead to genome diversification and speciation. Community genomic datasets can also enable subsequent gene expression and proteomic studies to determine how resources are invested and functions are distributed among community members. Ultimately, genomics can reveal how individual species and strains contribute to the net activity of the community.

DNA↗

PubMed2006

Speciation in reverse: morphological and genetic evidence of the collapse of a three-spined stickleback (Gasterosteus aculeatus) species pair.

Historically, six small lakes in southwestern British Columbia each contained a sympatric species pair of three-spined sticklebacks (Gasterosteus aculeatus). These pairs consisted of a 'benthic' and 'limnetic' species that had arisen postglacially and, in four of the lakes, independently. Sympatric sticklebacks are considered biological species because they are morphologically, ecologically and genetically distinct and because they are strongly reproductively isolated from one another. The restricted range of the species pairs places them at risk of extinction, and one of the pairs has gone extinct after the introduction of an exotic catfish. In another lake, Enos Lake, southeastern Vancouver Island, an earlier report suggested that its species pair is at risk from elevated levels of hybridization. We conducted a detailed morphological analysis, as well as genetic analysis of variation at five microsatellite loci for samples spanning a time frame of 1977 to 2002 to test the hypothesis that the pair in Enos Lake is collapsing into a hybrid swarm. Our morphological analysis showed a clear breakdown between benthics and limnetics. Bayesian model-based clustering indicated that two morphological clusters were evident in 1977 and 1988, which were replaced by 1997 by a single highly variable cluster. The most recent 2000 and 2002 samples confirm the breakdown. Microsatellite analysis corroborated the morphological results. Bayesian analyses of population structure in a sample collected in 1994 indicated two genetically distinct populations in Enos Lake, but only a single genetic population was evident in 1997, 2000, and 2002. In addition, genetic analyses of samples collected in 1997, 2000, and 2002 showed strong signals of 'hybrids'; they were genetically intermediate to parental genotypes. Our results support the idea that the Enos Lake species pair is collapsing into a hybrid swarm. Although the precise mechanism(s) responsible for elevated hybridization in the lake is unknown, the demise of the Enos Lake species pair follows the appearance of an exotic crayfish, Pascifasticus lenisculus, in the early 1990s.

Animals↗