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PubMed2006

Differences in microbial activity and microbial populations of peat associated with suppression of damping-off disease caused by Pythium sylvaticum.

The microbiological characteristics associated with disease-suppressive peats are unclear. We used a bioassay for Pythium sylvaticum-induced damping-off of cress seedlings to identify conducive and suppressive peats. Microbial activity in unconditioned peats was negatively correlated with the counts of P. sylvaticum at the end of the bioassay. Denaturing gradient gel electrophoresis (DGGE) profiling and clone library analyses of small-subunit rRNA gene sequences from two suppressive and two conducive peats differed in the bacterial profiles generated and the diversity of sequence populations. There were also significant differences between bacterial sequence populations from suppressive and conducive peats. The frequencies of a number of microbial groups, including the Rhizobium-Agrobacterium group (specifically sequences similar to those for the genera Ochrobactrum and Zoogloea) and the Acidobacteria, increased specifically in the suppressive peats, although no single bacterial group was associated with disease suppression. Fungal DGGE profiles varied little over the course of the bioassay; however, two bands associated specifically with suppressive samples were detected. Sequences from these bands corresponded to Basidiomycete yeast genera. Although the DGGE profiles were similar, fungal sequence diversity also increased during the bioassay. Sequences highly similar to those of Cryptococcus increased in relative abundance during the bioassay, particularly in the suppressive samples. This study highlights the importance of using complementary approaches to molecular profiling of complex populations and provides the first report that basidiomycetous yeasts may be associated with the suppression of Pythium-induced diseases in peats.

Basidiomycota↗
PubMed1989

Characterization of bacteria that suppress rhizoctonia damping-off in bark compost media by analysis of Fatty Acid biomarkers.

Examination of cucumber roots (Cucumis sativus L.) grown in bark compost media and of the surrounding edaphic substrate showed profiles of polar lipid fatty acids commonly found in bacteria. The composition of fatty acids in these profiles differed significantly between roots grown in a medium naturally suppressive to Rhizoctonia damping-off and roots from a conducive medium. Cucumber roots from the suppressive medium had higher proportions of cis-vaccenic acid (18:1 omega 7c) and the iso-branched monoenoic fatty acid i17:1 omega 8 but lower proportions of several iso- and anteiso-branched fatty acids compared with roots from the conducive medium. The concentrations of the bacterial fatty acids were significantly lower in the surrounding media. However, the suppressive and conducive growth substrates had differences in the composition of the bacterial fatty acids similar to those found between the cucumber roots proper. These results suggest major differences in bacterial community composition between suppressive and conducive systems. Fatty acid analyses were also utilized to examine the effects on bacterial community composition of root colonization by Flavobacterium balustinum 299, a biocontrol agent. The concentration of the most prominent fatty acid in this bacterium, i17:1 omega 8, was increased on roots produced from inoculated seeds in a medium rendered suppressive by the treatment. This change was concomitant with a significant increase in the concentration of 18:1 omega 7c, not present in the lipids of the antagonist, indicating a shift in the microflora from a conducive to a suppressive bacterial community.

Journal Article↗
PubMed1993

Effect of organic matter decomposition level on bacterial species diversity and composition in relationship to pythium damping-off severity.

Rhizosphere bacteria were isolated from root tip segments of cucumber seedlings grown in a suppressive, slightly decomposed light-colored peat mix, a conducive, more decomposed dark-colored peat mix, and a suppressive dark peat mix amended with composted hardwood bark. The bacteria were identified by a gas chromatographic fatty acid methyl ester analysis. The total number of taxa recovered from a single root tip segment ranged from 9 to 18. No single taxon predominated on all root tip segments harvested from any of the mixes. The highest relative population density reached by a given taxon on any root tip segment was 45%. Hill's first and second diversity numbers, the modified Hill's ratio, and Hurlbert's rarefaction method, which were used as measures of species diversity, indicated that the organic matter decomposition level of the potting mixes did not affect bacterial species diversity. Bray-Curtis polar ordination and Dice resemblance functions, however, indicated that the organic matter decomposition level of a mix significantly influenced the composition of bacterial species in the rhizosphere. Pseudomonas spp. and other taxa capable of inducing suppression of pythium damping-off predominated in the suppressive mixes. These organisms were absent from the conducive mix, in which Arthrobacter and Bacillus spp. predominated. Although effective bacterial biocontrol agents were isolated from both the suppressive mixes and the conducive mix, the majority were isolated from the less decomposed suppressive mixes. Finally, the efficacy of strains was significantly greater in the slightly decomposed light peat mix than in the decomposed dark peat mix. Natural disease suppression within these mixes was associated with the organic matter decomposition level and the bacterial species compositions of the mixes.

Journal Article↗
PubMed1995

Damped oscillations in photosensory transduction of Halobacterium salinarium induced by repellent light stimuli.

Halobacteria usually respond to repellent light stimuli by reversing their swimming direction. However, cells seem to be in a refractory state when stimulated immediately after performance of a reversal. I found that in this case, a special type of response is exhibited rather than spontaneous behavior. A strong stimulus induced a rhythmic pattern of successive reversals. On stimulation immediately after a reversal of swimming direction, the first of these reversals was skipped without influence on the rhythm. The results suggest that the stimulus evokes an oscillating signal which alters reversal probability but which is itself independent of the state of the motor apparatus. The oscillation has a period length of about 5 s and is damped out within a few cycles. It does not depend on the special sensory photosystem through which the stimulus is applied. The consequences of these findings for the model description of swimming behavior control in halobacteria are discussed.

Halobacterium↗
PubMed1989

Damp housing and childhood asthma; respiratory effects of indoor air temperature and relative humidity.

In a questionnaire survey of a random sample of 1000 children aged 7 years, a significantly greater proportion of those living in homes reported as damp were affected by wheeze (22% v 11%), day cough, night cough, and chesty colds. Simultaneous estimation of relative humidity in the bedrooms of 778 children and continuous 7 day recordings of ambient temperature and humidity in a stratified sample of 317 bedrooms showed no association with the same respiratory symptoms. No correlation was found between bedroom conditions and baseline ventilatory function or exercise induced reduction in FEV1. These results run counter to the widely held belief that indoor temperature and humidity are important determinants of respiratory ill health, although they do not directly exclude effects due to mites or moulds, whose survival is determined by the humidity of their respective microenvironments.

Asthma↗
PubMed1985

Rete mirabile of goat: its flow-damping effect on cerebral circulation.

This work was designed to characterize in anesthetized goats the hemodynamic response of the carotid rete during pharmacologically induced changes in systemic blood pressure or blood flow to the brain. Under control conditions, mean blood pressure in the middle cerebral artery (distal to rete) was 18% lower than that measured in the internal maxillary artery (proximal to rete). Pressure gradient and calculated resistance across the rete were unchanged when systemic arterial pressure was increased or decreased by intravenous administration of norepinephrine or isoproterenol, respectively. Hypercapnia or injections of isoproterenol and acetylcholine into the internal maxillary arteries increased blood flow and decreased middle cerebral arterial pressure, whereas injections of norepinephrine decreased blood flow and increased postrete pressure. Calculated resistance across the rete was unchanged. These observations indicate that the response of the carotid rete to the substances tested is negligible; they also suggest that the carotid rete may have a flow-damping effect by maintaining resistance to blood flow when a change in the caliber of brain vessels occurs.

Acetylcholine↗
PubMedDate not supplied

Comparison of horizontal nystagmus in different head positions: a study by damped pendular rotation test.

Damped pendular rotation was given with the initial maximum speed of 180 degrees/s. The subject's head was tilted forward at an angle of 30 degrees from the upright position, or kept in the upright position, or tilted backward at 30 degrees from the upright position. Electronystagmography was used to evaluate the maximal slow-phase eye velocity (mx SPEV) of the horizontal nystagmus. Differences existed in mx SPEVs of the horizontal nystagmus for the head-tilted positions at 30 degrees forward or backward and that obtained in the upright position. The mx SPEV of the horizontal nystagmus in the upright position was higher than those acquired in the head-tilted positions.

Adult↗
PubMed1991

Damped oscillation of the lateral hypothalamic multineuronal activity synchronized to daily feeding schedules in rats with suprachiasmatic nucleus lesions.

In male Wistar rats with chronically implanted electrodes, multiple-unit activity (MUA) was recorded from the lateral hypothalamus (LH) and ventromedial hypothalamus (VMH). Blinded rats with bilateral suprachiasmatic nucleus (SCN) lesions showed no circadian rhythm in MUA or motor activity when food was available ad libitum. However, under a restricted-feeding schedule (food was available from 1400 to 1600 hr; water was always available) lasting for 10 days, a gradual increase of MUA of the LH developed, starting 3-4 hr prior to the feeding time. The elevated MUA lasted up to 6-7 hr after feeding and subsequently returned to the baseline level. This circadian rhythm of MUA of the LH persisted up to 4 days under total food deprivation, with quickly decreasing amplitude after termination of the schedule. MUA rhythm in VMH was less obvious than that in LH. Also, general motor activity showed a rhythm comparable to that of MUA, but it was less prominent. The elevated MUA in the LH prior to the feeding time may have been neural substrate of anticipatory activity appearing under the restricted-feeding schedule. These findings may suggest the existence of a quickly damping oscillator mechanism in the brain, presumably in the LH, which can be induced by daily feeding cues in the absence of the SCN.

Animals↗
PubMed2006

DAMPs, PAMPs and alarmins: all we need to know about danger.

Multicellular animals detect pathogens via a set of receptors that recognize pathogen-associated molecular patterns (PAMPs). However, pathogens are not the only causative agents of tissue and cell damage: trauma is another one. Evidence is accumulating that trauma and its associated tissue damage are recognized at the cell level via receptor-mediated detection of intracellular proteins released by the dead cells. The term "alarmin" is proposed to categorize such endogenous molecules that signal tissue and cell damage. Intriguingly, effector cells of innate and adaptive immunity can secrete alarmins via nonclassical pathways and often do so when they are activated by PAMPs or other alarmins. Endogenous alarmins and exogenous PAMPs therefore convey a similar message and elicit similar responses; they can be considered subgroups of a larger set, the damage-associated molecular patterns (DAMPs).

Animals↗
PubMed2000

A pilot study comparing the cognitive demand of walking for transfemoral amputees using the Intelligent Prosthesis with that using conventionally damped knees.

OBJECTIVE: To compare the cognitive demand of walking when using a conventional prosthesis with that using a microprocessor-controlled prosthesis. DESIGN: Ten unilateral transfemoral amputees wearing conventional pneumatic swing phase control (conventional prosthesis) prostheses walked on a treadmill which enforced a pattern of constantly varying speeds. The subjects simultaneously performed a simple or a complex distracting task. Following a period of accustomization, the subjects performed the same test wearing a prosthesis with microprocessor control of swing phase damping (the Intelligent Prosthesis). OUTCOME MEASURES: The three-dimensional trajectory (sway) of a retroreflective marker attached to the forehead was measured by a video-based motion analysis system, and used as a measure of gait quality. The ratio of the sway for the complex task over the simple task (the 'automation index') was used as a measure of the degree of automation of gait. RESULTS: No significant differences were found in the automation index between the two devices. However, the total sway for the conventional prosthesis was significantly higher. Sway during the complex distracting task was significantly higher than during the simple task. CONCLUSIONS: The microprocessor-controlled prosthesis was not found to be less cognitively demanding than a conventional prosthesis.

Adult↗
PubMed2005

A comparative evaluation of oxygen consumption and gait pattern in amputees using Intelligent Prostheses and conventionally damped knee swing-phase control.

OBJECTIVE: To compare the gait of amputees wearing conventionally damped pneumatic swing-phase control knees and microchip-controlled Intelligent Prostheses. DESIGN: Crossover trial. SETTING: An amputee rehabilitation centre in a teaching hospital. PARTICIPANTS: Ten established unilateral transfemoral prosthetic users were asked to participate in the trial; all agreed. INTERVENTIONS: The amputees were assessed wearing pneumatic swing-phase control knees and then with the Intelligent Prosthesis. MAIN OUTCOME MEASURES: Oxygen consumption while walking at different speeds on a treadmill, video-recording of gait assessed by a panel and temporal-spatial parameters of gait whilst walking at slow, fast or normal speeds in a gait laboratory. RESULTS: Mean oxygen cost for all subjects at 0.69 m/s was 0.33 ml/kg.m with the conventional limb and 0.30 ml/kg.m with the Intelligent Prosthesis (p = 0.01). At 1.25 m/s the mean oxygen cost for the conventional limb was 0.24 ml/kg.m and for the Intelligent Prosthesis was 0.22 ml/kg.m (not significant). The ANOVA analysis showed that oxygen cost was similar at normal walking speeds but increased more at lower speeds for the pneumatic swing-phase control leg compared to the Intelligent Prosthesis (p < 0.02). There were no significant differences in subjective gait evaluation or temporal and spatial gait parameters. CONCLUSION: At lower speeds oxygen cost was lower with the Intelligent Prosthesis. Gait analysis detected no significant changes between the two legs.

Adult↗
PubMed2005

Home dampness and molds, parental atopy, and asthma in childhood: a six-year population-based cohort study.

Previous studies of how parental atopy and exposure to dampness and molds contribute to the risk of asthma have been mainly cross-sectional or prevalent case-control studies, where selection and information bias and temporality constitute problems. We assessed longitudinally the independent and joint effects of parental atopy and exposure to molds in dwellings on the development of asthma in childhood. We conducted a population-based, 6-year prospective cohort study of 1,984 children 1-7 years of age at the baseline in 1991 (follow-up rate, 77%). The study population included 1,916 children without asthma at baseline and complete outcome information. The data collection included a baseline and follow-up survey. The outcome of interest was development of asthma during the study period. The studied determinants were parental allergic diseases and four indicators of exposure at baseline: histories of water damage, presence of moisture and visible molds, and perceived mold odor in the home. A total of 138 (7.2%) children developed asthma during the study period, resulting in an incidence rate of 125 cases per 10,000 person-years [95% confidence interval (CI), 104-146]. In Poisson regression adjusting for confounding, parental atopy [adjusted incidence rate ratio (IRR) 1.52; 95% CI, 1.08-2.13] and the presence of mold odor in the home reported at baseline (adjusted IRR 2.44; 95% CI, 1.07-5.60) were independent determinants of asthma incidence, but no apparent interaction was observed. The results of this cohort study with assessment of exposure before the onset of asthma strengthen the evidence on the independent effects of parental atopy and exposure to molds on the development of asthma.

Air Pollution, Indoor↗
PubMed1999

Microfungal contamination of damp buildings--examples of risk constructions and risk materials.

To elucidate problems with microfungal infestation in indoor environments, a multidisciplinary collaborative pilot study, supported by a grant from the Danish Ministry of Housing and Urban Affairs, was performed on 72 mold-infected building materials from 23 buildings. Water leakage through roofs, rising damp, and defective plumbing installations were the main reasons for water damage with subsequent infestation of molds. From a score system assessing the bioavailability of the building materials, products most vulnerable to mold attacks were water damaged, aged organic materials containing cellulose, such as wooden materials, jute, wallpaper, and cardboard. The microfungal genera most frequently encountered were Penicillium (68%), Aspergillus (56%), Chaetomium (22%), Ulocladium, (21%), Stachybotrys (19%) and Cladosporium (15%). Penicillium chrysogenum, Aspergillus versicolor, and Stachybotrys chartarum were the most frequently occurring species. Under field conditions, several trichothecenes were detected in each of three commonly used building materials, heavily contaminated with S. chartarum. Under experimental conditions, four out of five isolates of S. chartarum produced satratoxin H and G when growing on new and old, very humid gypsum boards. A. versicolor produced the carcinogenic mycotoxin sterigmatocystin and 5-methoxysterigmatocystin under the same conditions.

Air Pollution, Indoor↗
PubMed2005

Retrieval of aerosol refractive index from extinction spectra with a damped harmonic-oscillator band model.

A new method for the retrieval of the spectral refractive indices of micrometer-sized particles from infrared aerosol extinction spectra has been developed. With this method we use a classical damped harmonic-oscillator model of molecular absorption in conjunction with Mie scattering to model extinction spectra, which we then fit to the measurements using a numerical optimal estimation algorithm. The main advantage of this method over the more traditional Kramers-Kronig approach is that it allows the full complex refractive-index spectra, along with the parameters of the particle size distribution, to be retrieved from a single extinction spectrum. The retrieval scheme has been extensively characterized and has been found to provide refractive indices with a maximum uncertainty of approximately 10% (with a minimum of approximately 0.1%). Comparison of refractive indices calculated from measurements of a ternary solution of HNO3, H2SO4, and H2O with those published in J. Phys. Chem. A 104, 783 (2000) show similar differences as found by other authors.

Journal Article↗
PubMed1995

Bistability and damped oscillations in the fructose 6-phosphate/fructose 1,6-bisphosphate cycle in cell-free extracts from rat liver.

The dynamics of the fructose 6-phosphate/fructose 1,6-bisphosphate substrate cycle was investigated in cell-free extracts from rat liver. Under conditions of continuous substrate supply different types of stationary states and damped oscillations were observed experimentally and found to be in qualitative agreement with theoretical predictions. Changing the adenylate energy charge of the substrate supply, bistability was shown to be related to irreversible transitions between functionally different branches of stable stationary states.

Animals↗
PubMed2000

Alcohol control and injury death in Alaska native communities: wet, damp and dry under Alaska's local option law.

OBJECTIVE: This article tests whether different forms of community-level alcohol control significantly affect injury deaths in a population with extremely high injury mortality. METHOD: The 1981 Alaska local option law provides a natural experiment for studying how implementation of community level controls may be associated with changes in injury deaths, most of which are alcohol-related, among Alaska Natives living in small communities. The study compares population and community-specific death rates under different levels of alcohol control for the 97 communities that passed restrictions between 1980 and 1993 with the death rates in the same communities during periods when no restrictions were in place. RESULTS: Injury death rates were generally lower during periods when alcohol sales, importation or possession were restricted than when no restrictions were in place (wet). More restrictive controls (dry) significantly reduced homicides; less restrictive control options (damp) reduced suicides. Accident and homicide death rates fell, on average, by 74 and 66 per 100,000, respectively, for the 89 communities that banned sale and importation or possession. A control group of 61 small communities that did not change control status under the law showed no significant changes over time in accident or homicide death rates. CONCLUSIONS: The changes in accidental and homicide death rates are statistically significant, although these reduced rates remain 2.5 to 7 times national death rates. The isolated nature of Alaskan villages may explain why alcohol control has more effect in Alaska than has been found in studies of Native Americans living in other states.

Accidents↗
PubMed1995

Assessment of periodontal tissues damping characteristics: current concepts and clinical trials.

The reproducibility of an electronic device for the assessment of periodontal tissues damping characteristics was judged by evaluating the inter-examiner, inter-device and day to day variations of the measurements (PTVs). Nine young periodontally healthy volunteers were examined by two examiners (EX-1 and EX-2) and two devices (D-1 and D-2) in the following sequence: EX-1 D-1, EX-2 D-1, EX-1 D-2, and EX-2 D-2. PTVs were obtained at 5 different occasions during the same day. In some instances examiner 2 measured higher scores than examiner 1 with both devices. This difference was statistically significant (P = 0.05), if the total of 900 measurements was considered. The measurements of device 2 were approximately 0.5 PTV units higher, also reaching a statistical significance (P = 0.05). This difference is of limited clinical significance. The day to day variation was evaluated by comparing the scores obtained at 8 a.m. with the ones at the four other periods. The lowest scores were measured at 8 a.m. Only the 11 a.m. and the 2 p.m. measurements differed significantly. The effect of hormonal changes during the menstrual cycle and of smoking habits on PTVs were also evaluated. Ten female periodontally healthy volunteers were examined three times a week, during a period of two menstrual cycles. No significant PTV changes were found during the menstrual cycle. The effect of the smoking habit on PTVs was tested on 23 periodontally healthy patients.(ABSTRACT TRUNCATED AT 250 WORDS)

Adult↗