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Multivariate determination of glucose concentrations from optimally filtered frequency-warped NIR spectra of human blood serum.

Glucose concentrations over the 39-160 mg dl-1 range have been determined from 357 NIR (near-infrared) spectra of human blood serum in the spectral region from 6766 cm-1 to 4003 cm-1. A frequency-warping procedure was applied to the NIR data to compress 511 spectral components into 102 in the 6766-4003 cm-1 spectral region. Before the data compression process was carried out, the NIR spectrum of deionized water was subtracted from each of the blood serum spectra to remove the intrinsic high background absorption due to the water. PLS (partial least-squares) regression was coupled with time-domain digital Butterworth bandpass filtering in an optimization procedure. The optimization procedure was carried out over a range of centre frequencies and bandwidths for first- (two-pole), second- (four-pole) and third- (six-pole) order bandpass filters, and over a range of PLS factors. The optimal PLS model and filter parameters were determined from a sequence of three-dimensional performance response maps for different numbers of PLS factors and filter orders. As a basis for comparison, the same optimization process was carried out for a Gaussian filter design approach (i.e., Fourier filtering). Using the optimally filtered frequency-warped NIR spectral data, an SEP (standard error of prediction) of 13.2 mg dl-1 was achieved fro the test (monitoring) data using 14 PLS factors and a simple first-order (two-pole) digital Butterworth bandpass filter.

Blood Glucose↗

[The application of lossless compression algorithm for ECG data in HOLTER].

Recently, HOLTER product is developing to long time recording. In order to decrease the cost, compression of ECG data is needed. It is done first by some kind of DPCM to decrease the range of the data Value, then by using suitable arithmetic of HUFFMAN coding's and Arithmetic coding's. All the methods can be realized in microprocessor and get compression ratio of 2-4.

Algorithms↗

Ellipsoidal fitting of corneal topography data after arcuate keratotomies with compression sutures.

BACKGROUND AND OBJECTIVE: After paired arcuate keratotomies and compression sutures (AK) for treatment of high postkeratoplasty astigmatism, corneal topography tends to be irregular. The purpose of this study was to demonstrate a mathematical method for approximation of discrete corneal topography power data with an ellipsoid for better appreciation of the clinical outcome after AK. PATIENTS AND METHODS: Thirty-one eyes of 28 consecutive patient who underwent AK for excessive postkeratoplasty astigmatism were studied. Regular keratometry, corneal topography (TMS-1), subjective refraction, and best-corrected visual acuity (VA) were assessed preoperatively and at 1 week and 1 year postoperatively. A simplex algorithm was applied for fitting an ellipsoidal surface to raw corneal topography power data. A set of parameters (meridional power, axis, and asphericity) were calculated. The cylinder of subjective refraction was correlated with the keratometric readings, the simulated keratometry (SimK) of the topography system, and the respective parameters of the model surface. RESULTS: Keratometric astigmatism and the cylinder of the model surface decreased from 8.1 +/- 3.2 and 7.9 +/- 2.9 D preoperatively to 4.5 +/- 2.1 and 5.3 +/- 2.0 D after 1 year, respectively. The asphericity in both meridional cross sections changed from a prolate ellipse preoperatively to an ablate ellipse at the early postoperative follow-up stage. Regarding the cylinder axis, there was a significant correlation of the model surface with the refractive cylinder at all examinations (P < .05), whereas there was no significant correlation of the SimK axis and the refractive cylinder axis. CONCLUSION: The approximation of corneal topography power data with an ellipsoidal model surface renders reconstruction of clinically relevant corneal topography parameters, including corneal asphericity with a marked data compression. Even in markedly irregular corneal surfaces, such as after AK, the correlation of amount/axis of refractive cylinder with the model surface parameters is more accurate than it is with respective SimK values of corneal topography analysis.

Adult↗

FASTPAT: a fast and efficient algorithm for string searching in DNA sequences.

A new string searching algorithm is presented aimed at searching for the occurrence of character patterns in longer character texts. The algorithm, specifically designed for nucleic acid sequence data, is essentially derived from the Boyer-Moore method (Comm. ACM, 20, 762-772, 1977). Both pattern and text data are compressed so that the natural 4-letter alphabet of nucleic acid sequences is considerably enlarged. The string search starts from the last character of the pattern and proceeds in large jumps through the text to be searched. The data compression and searching algorithm allows one to avoid searching for patterns not present in the text as well as to inspect, for each pattern, all text characters until the exact match with the text is found. These considerations are supported by empirical evidence and comparisons with other methods.

Algorithms↗

A new method for computed tomography image compression using adjacent slice data.

RATIONALE AND OBJECTIVES: The authors developed and subjectively evaluated an interslice compression algorithm that explores the redundancy among adjacent slices of an x-ray computed tomography (CT) scan. This algorithm has been compared to an intraslice compression algorithm based on the two-dimensional discrete cosine transform. METHODS: Nine x-ray CT head images from three patients were compressed with this interslice method at compression ratios of 5:1, 10:1, and 15:1. The same images were also compressed with the intraslice method at the same ratios. Six radiologists judged quality of randomly selected compressed and decompressed images compared to that of the originals. The evaluation data were analyzed statistically with the analysis of variance and Tukey's multiple comparison. Kappa-like statistics (Williams index and O'Connell and Dobson indexes) were also calculated to measure the agreement among readers beyond the amount expected by chance. RESULTS: The interslice coding algorithm showed significantly better quality than the intraslice method at significance level 0.05, even though there was no difference in the objective distortion measure (signal-to-noise ratio). Also, the quality of 10:1 compressed images with the interslice coding algorithm was not significantly different from that of the originals at level 0.05. While large variations in agreement occurred among readers, the overall agreement was statistically significant. CONCLUSIONS: By using adjacent slice information in compressing x-ray CT images, significantly better quality in compressed and decompressed images was achieved. While 10:1 compressed images with the interslice algorithm were not significantly different from the originals in quality at level 0.05, effect on diagnostic accuracy remains to be investigated.

Algorithms↗

A syntax-preserving error resilience tool for JPEG 2000 based on error correcting arithmetic coding.

JPEG 2000 is the novel ISO standard for image and video coding. Besides its improved coding efficiency, it also provides a few error resilience tools in order to limit the effect of errors in the codestream, which can occur when the compressed image or video data are transmitted over an error-prone channel, as typically occurs in wireless communication scenarios. However, for very harsh channels, these tools often do not provide an adequate degree of error protection. In this paper, we propose a novel error-resilience tool for JPEG 2000, based on the concept of ternary arithmetic coders employing a forbidden symbol. Such coders introduce a controlled degree of redundancy during the encoding process, which can be exploited at the decoder side in order to detect and correct errors. We propose a maximum likelihood and a maximum a posteriori context-based decoder, specifically tailored to the JPEG 2000 arithmetic coder, which are able to carry out both hard and soft decoding of a corrupted code-stream. The proposed decoder extends the JPEG 2000 capabilities in error-prone scenarios, without violating the standard syntax. Extensive simulations on video sequences show that the proposed decoders largely outperform the standard in terms of PSNR and visual quality.

Algorithms↗

The dependence between the strength and stiffness of cancellous and cortical bone tissue for tension and compression: extension of a unifying principle.

A strong positive correlation between the apparent ultimate strength and stiffness of bone tissue that can be expressed by a unified relationship has been observed for cortical bone in tension and low-density cancellous bone in compression. For practical purposes, the existence of a relationship between strength and stiffness is significant in that bone stiffness can be measured in vivo using non-invasive methods. It is generally accepted that bone strength is greater in compression than in tension whereas there is no substantial evidence that bone stiffness in compression is different from that in tension. This might suggest that compressive strength would relate to the stiffness, if at all, in a way that is different from tensile strength. In order to examine similarities and differences in the way strength is associated with stiffness between modes of loading and tissue type, we tested equine cortical bone and bovine cancellous bone in compression and examined these data together with previously reported data from compression testing of human cancellous bone as well as tensile testing of cortical bone from various sources. We have found for cortical bone that (i) the sensitivity of strength to stiffness is the same for tension and compression (p>0.75, ANCOVA), and (ii) the difference between the magnitudes of compressive and tensile strength for cortical bone is the result of an additive, rather than a multiplicative factor (52.1 MPa after adjusting to 1 microstrain/s, p<0.0001, ANOVA). High-density bovine tibial cancellous bone, on the other hand, has a steeper slope for its compressive strength-stiffness relationship than that for cortical bone and human cancellous bone, resulting in a transitional relationship between compressive strength and stiffness for a range of bone types and densities. Based on the current results and previous work, it is suggested that the offset strength in the compressive strength-stiffness relationship may be a direct manifestation of the difference between the compressive and tensile strengths of the bone material that constitutes the building blocks of the bone structure. Deviation of high-density cancellous bone compressive behavior from the other bone types and densities is attributed to stress distribution differences between the bone types.

Adaptation, Physiological↗

Comparison of image compression viability for lossy and lossless JPEG and Wavelet data reduction in coronary angiography.

BACKGROUND: Lossless or lossy compression of coronary angiogram data can reduce the enormous amounts of data generated by coronary angiographic imaging. The recent International Study of Angiographic Data Compression (ISAC) assessed the clinical viability of lossy Joint Photographic Expert Group (JPEG) compression but was unable to resolve two related questions: (A) the performance of lossless modes of compression in coronary angiography and (B) the performance of newer lossy wavelet algorithms. This present study seeks to supply some of this information. METHODS: The performance of several lossless image compression methods was measured in the same set of images as used in the ISAC study. For the assessment of the relative image quality of lossy JPEG and wavelet compression, the observers ranked the perceived image quality of computer-generated coronary angiograms compressed with wavelet compression relative to the same images with JPEG compression. This ranking allowed the matching of compression ratios for wavelet compression with the clinically viable compression ratios for the JPEG method as obtained in the ISAC study. RESULTS: The best lossless compression scheme (LOCO-I) offered a mean compression ratio (CR) of 3.80:1. The quality of images compressed with the lossy wavelet-based method at CR = 10:1 and 20:1 was comparable to JPEG compression at CR = 6:1 and 10:1, respectively. CONCLUSION: The study has shown that lossless compression can exceed the CR of 2:1 usually quoted. For lossy compression, the range of clinically viable compression ratios can probably be extended by 50 to 100% when applying wavelet compression algorithms as compared to JPEG compression. These results can motivate a larger clinical study.

Algorithms↗

Lossy compression should not be used in certain imaging applications such as chest radiography. For the proposition.

Computational techniques are frequently used to compress image data so that transmission and storage requirements are reduced. If the computational techniques result in no loss in image resolution, the technique is referred to as lossless compression. Greater compression of data may yield some loss in spatial or temporal resolution, and is referred to as lossy compression. In some radiologic examinations [e.g., gastrointestinal (GI) studies], some resolution loss may be tolerable, whereas in others (chest examinations and mammography) it conceivably could result in missed pathology. Without lossy compression, however, data requirements can be overwhelming for transmission, storage and retrieval of images such as chest films. The unanswered question, addressed in this Point/Counterpoint issue, is whether some degree of lossy compression can be tolerated in chest radiography.

Humans↗

Developmental biomechanics of the cervical spine: Tension and compression.

Epidemiological data and clinical indicia reveal devastating consequences associated with pediatric neck injuries. Unfortunately, neither injury prevention nor clinical management strategies will be able to effectively reduce these injuries or their effects on children, without an understanding of the cervical spine developmental biomechanics. Thus, we investigated the relationship between spinal development and the functional (stiffness) and failure biomechanical characteristics of the cervical spine in a baboon model. A correlation study design was used to define the relationships between spinal tissue maturation and spinal biomechanics in both tension and compression. Eighteen baboon cervical spine specimens distributed across the developmental spectrum (1-26 human equivalent years) were dissected into osteoligamentous functional spinal units. Using a servo-hydraulic MTS, these specimens (Oc-C2, C3-C4, C5-C6, C7-T1) were non-destructively tested in tension and compression and then displaced to failure in tension while measuring the six-axes of loads and displacements. The functions describing the developmental biomechanical response of the cervical spine for stiffness and normalized stiffness exhibited a significant direct relationship in both tension and compression loading. Similarly, the tensile failure load and normalized failure load demonstrated significant maturational increases. Further, differences in biomechanical response were observed between the spinal levels examined and all levels exhibited clinically relevant failure patterns. These data support our understanding of the child cervical spine from a developmental biomechanics perspective and facilitate the development of injury prevention or management schema for the mitigation of child spine injuries and their deleterious effects.

Aging↗

Initial outcome and efficacy of "kyphoplasty" in the treatment of painful osteoporotic vertebral compression fractures.

STUDY DESIGN: An Institutional Review Board-approved Phase I efficacy study of inflatable bone tamp usage in the treatment of symptomatic osteoporotic compression fractures. OBJECTIVES: To evaluate the safety and efficacy of inflatable bone tamp reduction and cement augmentation, "kyphoplasty," in the treatment of painful osteoporotic vertebral compression fractures. SUMMARY OF BACKGROUND DATA: Osteoporotic compression fractures can result in progressive kyphosis and chronic pain. Traditional treatment for these patients includes bed rest, analgesics, and bracing. Augmentation of vertebral compression fractures with polymethylmethacrylate, "vertebroplasty," has been used to treat pain. This technique, however, makes no attempt to restore the height of the collapsed vertebral body. Kyphoplasty is a new technique that involves the introduction of inflatable bone tamps into the vertebral body. Once inflated, the bone tamps restore the vertebral body back toward its original height while creating a cavity that can be filled with bone cement. PATIENTS AND METHODS: Seventy consecutive kyphoplasty procedures were performed in 30 patients. The indications included painful primary or secondary osteoporotic vertebral compression fractures. Mean duration of symptoms was 5.9 months. Symptomatic levels were identified by correlating the clinical data with MRI findings. Perioperative variables and bone tamp complications or issues were recorded and analyzed. Preoperative and postoperative radiographs were compared to calculate the percentage height restored. Outcome data were obtained by comparing preoperative and latest postoperative SF-36 data. RESULTS: At the completion of the Phase I study there were no major complications related directly to use of this technique or use of the inflatable bone tamp. In 70% of the vertebral bodies kyphoplasty restored 47% of the lost height. Cement leakage occurred at six levels (8.6%).SF-36 scores for Bodily Pain 11.6-58.7, (P = 0.0001) and Physical Function 11.7-47.4, (P = 0.002) were among those that showed significant improvement. CONCLUSIONS: The inflatable bone tamp was efficacious in the treatment of osteoporotic vertebral compression fractures. Kyphoplasty is associated with early clinical improvement of pain and function as well as restoration of vertebral body height in the treatment of painful osteoporotic compression fractures.

Aged↗

Computerised method for acquisition and display of gastrointestinal motility data.

A computerised system is developed for the acquisition and display of gastrointestinal motility data which utilises a purpose developed software program called 'PC-motil', running on an IBM compatible microcomputer. 'PC-motil' displays data during collection, writes data to disk file and compresses all data at the end of a study on to a single monitor screen for convenient overview. Any area of interest, in single or multiple channels, may be selected and expanded for detailed examination. This system is tested by the recording of gastric and jejunal motility patterns of 11 healthy volunteers in fasting and fed states. All antral and jejunal migrating motor complexes (MMCs) in fasting studies, as well as all fed motility patterns were recognisable in both 'compressed' and 'expanded' form. The reproduction of motility patterns by the computer based system was indistinguishable from that of a conventional analogue chart recorder. This computerised system provides a convenient and cost-effective means of acquisition, storage and display of motility data in digital form.

Adult↗