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PubMed1992

Chromosomal organization of the heavy chain variable region gene segments comprising the human fetal antibody repertoire.

The adult repertoire of antibody specificities is acquired in a developmentally programmed fashion that, in mouse and man, parallels the ordered rearrangement of a limited number of germ-line heavy chain variable region (VH) gene segments during development. It has been hypothesized that this developmental bias is a consequence of gene organization. In the mouse, rearrangement of VH gene segments proximal to the heavy chain joining region (JH) locus precedes rearrangement of genes located more distal to the JH locus. Similarly, in man, two VH elements located proximal to JH are expressed during fetal development. To test further this hypothesis in man, we have determined in a single individual the positions of an additional eight distinct VH elements known to comprise a significant fraction of the human developmental repertoire. These developmentally expressed VH elements were found to be dispersed over a region of 890 kilobases of the VH locus and were interspersed with other VH elements that are not known to be developmentally expressed. Thus, the ordered developmental expression of VH gene segments in man must involve mechanisms beyond physical proximity to the JH locus. Further, these results support the notion that fetal expression of VH gene segments is a regulated process and suggest that this regulation is important in the acquisition of immunocompetence.

Base Sequence↗

PubMedDate not supplied

Employing new grads: a plan for success.

The authors describe an elegant goal-driven program designed to prepare new nursing graduates to function optimally on a hospital unit by focusing first on their security and affiliative needs [belonging], and subsequently on their professional skill and knowledge acquisition. This developmental program has both a clear timeline and structure as well as well defined role expectations for the experienced RN guide/mentor, the orientee, and the unit's nurse manager and staff. The guide/mentors are carefully selected and prepared for their new roles as well. Shared goal-setting sessions are held weekly, along with three major evaluations during the first 90 days, with less frequent updates throughout the following year. This frequent feedback, reinforcement, and fine-tuning of goals allows the new graduate to gradually take on the full work load by the end of week 12 without feeling as overwhelmed or inadequate as those who are less carefully developed.

Clinical Competence↗

PubMed1997

Light modulates the spatial patterns of 3-hydroxy-3-methylglutaryl coenzyme A reductase gene expression in Arabidopsis thaliana.

Although the coordinated biosynthesis of isoprenoid compounds is thought to be essential to the normal processes of plant growth and development, the mechanisms that regulate the mevalonate pathway in plants are not well understood. As the first committed step in the pathway, the conversion of 3-hydroxy-3-methylglutaryl coenzyme A (HMG CoA) to mevalonic acid by HMG CoA reductase and the regulation of the genes encoding this enzyme have been implicated in the network that controls isoprenoid biosynthesis in higher plants. Using histochemical staining for beta-glucuronidase, as well as conventional RNA hybridization analysis, the temporal and spatial regulation of HMG1, one of the genes encoding HMG CoA reductase in the crucifer Arabidopsis thaliana, has been characterized. Furthermore, the HMG1 promoter is shown to be differentially responsive to illumination in different organs, and promoter activation by light deprivation is confined primarily to immature leaves. In contrast, expression of the HMG1 gene in roots is confined to the elongation zone and is not responsive to illumination. Light-mediated regulation of HMG1 expression is shown to be an organ-autonomous response that depends on direct illumination, and environmental cues regarding light do not appear to be exchanged between different organs in Arabidopsis. These studies reveal several new features of HMG1 regulation, and indicate that the high levels of HMG CoA reductase expression detected in immature leaves may be primarily attributed to the dark-induced expression of HMG1, and that HMG1 is expressed at low levels throughout the plant in response to light. Thus, environmental cues interact with the developmental program to define the pattern of HMG1 gene expression in Arabidopsis.

Arabidopsis↗

PubMed2004

Evolving eyes.

Despite the incredible diversity among extant eyes, laws of physics constrain how light can be collected resulting in only eight known optical systems in animal eyes. Surprisingly, all animal eyes share a common molecular strategy using opsin for catching photons, but there are a diverse collection of mechanisms with proteins unrelated to each other used to focus light for vision. However, opsin is expressed in either one of two types of photoreceptor that differ fundamentally in their structure and tissue of origin. Taken together, this collection of observations strongly suggests that eyes have had multiple origins with remarkable convergence due to physics and molecular conservation of the opsin protein. Yet recent work has shown that a family of conserved genes are involved in eye formation despite substantial differences in their structure and origin, leading to a controversy over whether eyes evolved once or repeatedly. A likely resolution of this discussion is that particular genes and genetic programs have become associated with specific features needed for eyes and such suites of genes have been recruited as new eyes evolve. Since specific genes and their products are used repeatedly, it is somewhat difficult to conceptualize their causal relationships relative to evolutionary processes. However, detailed comparison of developmental programs may offer clues about multiple origins.

Animals↗

PubMed1999

Initiation of DNA replication in eukaryotes: questioning the origin.

Although proteins involved in DNA replication in yeast have counterparts in multicellular organisms, the definition of an origin of DNA replication and its control in higher eukaryotes might obey to different rules. Origins of DNA replication that are site-specific have been found, supporting the notion that specific DNA regions are used to initiate DNA synthesis along metazoan chromosomes. However, the notion that specific sequences will define origins is still being debated. The variety and complexity of transcriptional programs that have to be regulated in multicellular organisms may impose a plasticity that would not be compatible with a fixed origin simply defined at the sequence level. Such a plasticity would be essential to developmental programs where the control of DNA replication could be more integrated to the control of gene expression than in unicellular eukaryotes.

Animals↗

PubMed2000

Chromatin diminution in the parasitic nematodes ascaris suum and parascaris univalens.

Chromatin diminution in Parascaris univalens and Ascaris suum undoubtedly represents an interesting case of developmentally programmed DNA rearrangement in higher eukaryotes. It is a complex mechanism involving chromosomal breakage, new telomere addition and DNA degradation, and occurs in all presomatic cells. The process is rather specific with respect to its developmental timing and the chromosomal regions that are eliminated. The functional significance of chromatin diminution still remains an enigma. The fact, however, that single-copy, protein-coding genes are contained in the eliminated DNA demonstrates that in P. univalens and A. suum, there is a qualitative difference between germ-line and somatic genomes, and suggests that chromatin diminution may be used as a "throw-away" approach to gene regulation. We present a hypothesis as to how, during evolution, a partial genome duplication might have been linked to the process of chromatin diminution, in order to provide a selective advantage to parasitic DNA-eliminating nematodes.

Animals↗

PubMed2004

Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae.

In eukaryotic cells, cohesin holds sister chromatids together until they separate into daughter cells during mitosis. We have used chromatin immunoprecipitation coupled with microarray analysis (ChIP chip) to produce a genome-wide description of cohesin binding to meiotic and mitotic chromosomes of Saccharomyces cerevisiae. A computer program, PeakFinder, enables flexible, automated identification and annotation of cohesin binding peaks in ChIP chip data. Cohesin sites are highly conserved in meiosis and mitosis, suggesting that chromosomes share a common underlying structure during different developmental programs. These sites occur with a semiperiodic spacing of 11 kb that correlates with AT content. The number of sites correlates with chromosome size; however, binding to neighboring sites does not appear to be cooperative. We observed a very strong correlation between cohesin sites and regions between convergent transcription units. The apparent incompatibility between transcription and cohesin binding exists in both meiosis and mitosis. Further experiments reveal that transcript elongation into a cohesin-binding site removes cohesin. A negative correlation between cohesin sites and meiotic recombination sites suggests meiotic exchange is sensitive to the chromosome structure provided by cohesin. The genome-wide view of mitotic and meiotic cohesin binding provides an important framework for the exploration of cohesins and cohesion in other genomes.

Binding Sites↗

PubMed1999

The making of a flower: control of floral meristem identity in IT>Arabidopsis/IT>

During the reproductive phase of a plant, shoot meristems follow one of two developmental programs to produce either flowers or vegetative shoots. The decision as to which meristems give rise to flowers, and when they do so, determines the general morphology of an inflorescence. Molecular and genetic research in Arabidopsis and other model species has identified several genes that control the identity that a meristem will adopt. These meristem identity genes are activated in response to developmental and environmental cues, and can be assigned to three basic categories: those required either to initiate or maintain the floral program in some meristems and those required to maintain the vegetative program in others.

Journal Article↗

PubMed1996

The hypothalamic-pituitary axis: co-development of two organs.

Development of the anterior pituitary gland ultimately leads to the appearance of five distinct cell types that are defined by the trophic hormones which they produce, providing an instructive model system for elucidating the molecular mechanisms that underlie the determination of distinct cell phenotypes within an organ from a common precursor lineage. The recent identification of several homeodomain transcription factors expressed specifically in the anterior pituitary gland has revealed a transcriptional cascade orchestrating a developmental program that leads to the determination of the five mature cell types. Recent data from gene-targeting experiments in mice further imply that the execution of this program is dependent on inductive signals originating in the floor of the diencephalon.

Animals↗

PubMed2006

Evidence for a role of developmental genes in the origin of obesity and body fat distribution.

Obesity, especially central obesity, is a hereditable trait associated with a high risk for development of diabetes and metabolic disorders. Combined gene expression analysis of adipocyte- and preadipocyte-containing fractions from intraabdominal and subcutaneous adipose tissue of mice revealed coordinated depot-specific differences in expression of multiple genes involved in embryonic development and pattern specification. These differences were intrinsic and persisted during in vitro culture and differentiation. Similar depot-specific differences in expression of developmental genes were observed in human subcutaneous versus visceral adipose tissue. Furthermore, in humans, several genes exhibited changes in expression that correlated closely with body mass index and/or waist/hip ratio. Together, these data suggest that genetically programmed developmental differences in adipocytes and their precursors in different regions of the body play an important role in obesity, body fat distribution, and potential functional differences between internal and subcutaneous adipose tissue.

Adipocytes↗

PubMed2000

Overexpression of Xenopus laevis growth hormone stimulates growth of tadpoles and frogs.

The role of growth hormone (GH) in amphibian metamorphosis is ambiguous based on experiments in which mammalian GH was administered to tadpoles and frogs. We have reexamined the effects of GH by producing transgenic Xenopus laevis that overexpress the cDNA encoding X. laevis GH. These transgenic tadpoles take the same length of time to reach metamorphosis as control tadpoles, but the transgenic tadpoles are twice as large. After metamorphosis, the transgenic frogs grow at a greatly accelerated rate and develop skeletal abnormalities reminiscent of acromegaly. The transgenic frogs are larger than mature frogs in a few months and die in about 1 year. At as early as 10 months of age, the males have mature sperm. We conclude that the growth-promoting effects of GH in this amphibian closely resemble those described for mammals. Although excess GH increases the size of the tadpole, it does not alter the developmental programs involved in metamorphosis.

Animals↗

PubMed2002

Regulation of thymocyte differentiation: pre-TCR signals and beta-selection.

The specificity of the adaptive immune response is, in part, dependent on the clonal expression of the mature T cell receptor (TCR) on T lymphocytes. One mechanism regulating the clonality of the TCR occurs at the level of TCR-beta gene rearrangements during lymphocyte development. Expression of a nascent TCR-beta chain together with pre-Talpha (pTalpha) and CD3 molecules to form the pre-TCR complex, represents a critical checkpoint in T cell differentiation known as beta-selection. Indeed, failure to generate a functionally rearranged TCR-beta chain at this stage of development results in apoptosis. Signals derived from the pre-TCR complex trigger a maturation program within developing thymocytes that includes: rescue from apoptosis; inhibition of further DNA recombination at the TCR-beta gene locus (allowing for the clonality of antigen receptor expression; allelic exclusion); and induction of proliferation and differentiation. The signaling mechanisms that control this developmental program remain largely undefined. Here, we discuss recent evidence investigating the molecular mechanisms that regulate thymocyte differentiation downstream of pre-TCR formation.

Animals↗

PubMed1999

Programmed cell death of an identified motoneuron examined in vivo: electrophysiological and morphological correlates.

A paucity of information exists about the electrophysiological and anatomical correlates of neurons committed to die in vivo. Thus, we examined how an identified neuron, motoneuron MN-12, dies during development in the intact moth Manduca sexta. The developmental programmed cell death of this motoneuron was examined because of its defined commitment point of death. In addition, its ability to be unambiguously identified between animals and its accessibility to recording and dye injection facilitated our examination. MN-12 becomes committed to die approximately 28-30 h after adult emergence. At this time, MN-12 can no longer be saved by manipulations of steroid hormone levels, protein synthesis, or removal of descending inputs. Our initial prediction was that within a few hours after the commitment point, MN-12 would begin showing a gradual loss of central arbors and alterations in membrane properties. Contrary to our expectations, we found the MN-12 motoneuron to exhibit a stable central morphology and electrophysiological profile for approximately 12 h, followed by a rapid dismantling that occurred within a 1- to 2-h period. Several hours prior to the commitment point, the target muscle of MN-12 was no longer viable; yet, this did not affect the death of MN-12 or cause retraction of its motor terminals. We conclude that the delayed (12-h) onset of rapid cell death is not preceded by a slow accumulation of damages to the neuronal membrane (e.g., ion channels or cytoskeletal components) as both the electrical activity and morphology of MN-12 remained measurably unaltered during this 12-h lag.

Action Potentials↗

PubMed2002

Overview: Development in bacteria: spore formation in Bacillus subtilis.

Like eukaryotes, bacteria possess complex developmental programs that drive environmental adaptation and morphological differentiation. In some species, these morphological changes are quite elaborate and result in major changes in cell appearance, including the formation of ornate appendages. The ease with which some bacteria can be manipulated makes them highly attractive model systems for developmental analysis. In this set of reviews, we tackle the best studied of these systems, spore formation in Bacillus subtilis. Construction of a spore initiates in response to starvation, takes each cell about 8 h and is directed by a tightly controlled genetic program. First, the cell creates an internal protoplast with its own copy of the chromosome. Over the next several hours, development continues as proteins synthesized within the protoplast as well as in the surrounding cell cytoplasm coalesce into the various complex structures that comprise the spore. The resulting cell is metabolically dormant and as close to indestructible as any cell found on earth. Nonetheless, the spore retains the ability to revive almost immediately when nutrient returns to the environment. Here, we review the genetic control of spore formation, the structure and assembly of several major spore components, the process of germination, and the environmental and disease implications of spores. As these reviews document, spore formation in B. subtilis has been among the most productive systems for understanding both the broad themes and the molecular basis of development. Not only does this system continue to add to our understanding of these questions, but it provides a particularly powerful means to address the cell biological dimension of development.

Bacillus subtilis↗

PubMed2004

Lysophospholipids in development: Miles apart and edging in.

Sphingosine-1-phosphate (S1P) and lysophosphatidic acid (LPA) are endogenous bioactive lipids that participate in the regulation of mammalian cell proliferation, apoptosis, migration, and angiogenesis. These processes are each critical for successful embryogenesis, raising the possibility that lysophospholipid signaling may contribute to normal animal development. In fact, recent studies in developmental model systems have established that S1P and LPA are necessary for diverse developmental programs including those required for morphogenesis of vertebrate reproductive, cardiovascular and central and peripheral nervous systems (PNS), as well as the establishment of maternal-fetal circulation and the immune system. Genetic, morphological, and biochemical characterization of developmental model systems offer powerful approaches to elucidating the molecular mechanisms of lysophospholipid signaling and its contributions to animal development and postnatal physiology. In this review, the routes of S1P and LPA metabolism and our current understanding of lysophospholipid-mediated signal transduction in mammalian cells will be summarized. The evidence implicating lysophospholipid signaling in the development of specific vertebrate systems will then be reviewed, with an emphasis on signals mediated through G protein-coupled receptors of the Edg family. Lastly, recent insights derived from the study of simple metazoan models and implications regarding lysophospholipid signaling in organisms in which Edg receptors are not conserved will be explored.

Animals↗

PubMed2004

Release of the benzoxazinoids defense molecules during lateral- and crown root emergence in Zea mays.

We observed the release of the benzoxazinoids defense molecules on the surface of the primary root and the coleoptilar node in Zea mays during the emergence of lateral- and crown-roots, respectively. At later stages of crown root and lateral root development, benzoxazinoids around the emerged roots were no longer observed. Specific mutants revealed that the developmental status of the emerged roots was not important for the release of benzoxazinoids, but the breakage of the epidermis by emerging roots was. This is the first report of benzoxazinoid-release during normal development controlled by endogenous developmental programs. Release of benzoxazinoids around the emerging roots supports the idea that defense molecules accumulate at the site of root emergence in order to reduce pathogenic infections. We discuss possible explanations for the evolution of two different developmental mechanisms of root emergence.

Benzoxazines↗

PubMedDate not supplied

Heterochrony, cannibalism, and the evolution of viviparity in Salamandra salamandra.

The way in which novelties that lead to macroevolutionary events originate is a major question in evolutionary biology, and one that can be addressed using the fire salamander (Salamandra salamandra) as a model system. It is exceptional among amphibians in displaying intraspecific diversity of reproductive strategies. In S. salamandra, two distinct modes of reproduction co-occur: the common mode, ovoviviparity (females giving birth to many small larvae), and a phylogenetically derived reproductive strategy, viviparity (females producing only a few large, fully metamorphosed juveniles, which are nourished maternally). We examine the relationship between heterochronic modifications of the ontogeny and the evolution of the new reproductive mode in the fire salamander. The in vitro development of embryos of ovoviviparous and viviparous salamanders from fertilization to metamorphosis is compared, highlighting the key events that distinguish the two modes of reproduction. We identify the heterochronic events that, together with the intrauterine cannibalistic behavior, characterize the derived viviparous reproductive strategy. The ways in which evolutionary novelties can arise by modification of developmental programs can be studied in S. salamandra. Moreover, the variation in reproductive modes and the associated variation of sequences of development occur in neighboring, conspecific populations. Thus, S. salamandra is a unique biological system in which evolutionary developmental research questions can be addressed at the level of populations.

Animals↗

PubMed1993

Effects of 5-aza-2'-deoxycytidine on differentiation and oncogene expression in the human monoblastic leukemia cell line U-937.

The DNA hypomethylating agent 5-aza-2'-deoxycytidine was able to induce irreversible terminal differentiation of the human monoblastic leukemia cell line U-937, when administered at a concentration of 0.1 microM every 12 hours for six times (72 hours). Differentiation occurred after removal of the drug, as shown by the gradual appearance of morphological, cytochemical, phenotypical, and functional cell maturation, along with the loss of the proliferative potential. Adherence to the plastic surface, a further marker of monocytic differentiation, was observed in long-term cultures of treated cells. Molecular events induced by 5-aza-2'-deoxycytidine included a decrease in DNA methylation, along with a dramatic, permanent reduction in the levels of c-myc transcripts; both these events were detectable early (24 to 48 hours) after the start of drug administration. A stable increase in c-fos and c-fms mRNAs, regarded as molecular markers of monocytic differentiation, was observed only after the end of treatment, in concomitance with the appearance of differentiation markers. The latency between early and late effects elicited by 5-aza-2'-deoxycytidine in U-937 cells suggests that the drug, presumably through DNA hypomethylation, is able to promote 'competence' to differentiate, via the activation of the regulatory program(s) needed for a monoblast to maturate, rather than directly inducing the expression of differentiation-specific genes. The temporal order of events described renders the present model suitable for the study of the human monocytic developmental program and of the molecular regulatory steps entailing differentiation by 5-aza-2'-deoxycytidine.

Antigens, Surface↗