SEARCH · PubMed Health

Results for “Random forests”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 469 records · Page 26Linked to original sources

PubMed1998

Combined potassium and calcium channel antagonistic activities as a basis for neutral frequency dependent increase in action potential duration: comparison between BRL-32872 and azimilide.

OBJECTIVE: The effects of BRL-32872, azimilide and a selective blocker of the delayed rectifier potassium current, E-4031, were measured at two different basic cycle lengths (BCL), 300 and 1000 ms. Calcium channel antagonists of sarcolemmal (verapamil and nitrendipine) and sarcoplasmic reticulum (ryanodine) membranes were used to investigate whether the inhibition of the calcium current or the calcium release from the sarcoplasmic reticulum could alter the reverse-rate dependence of E-4031 on action potential duration (APD). METHODS: Guinea pig isolated papillary muscles were superfused with a Tyrode solution maintained at 37 degrees C and stimulated at a BCL of 300 or 1000 ms. The standard microelectrode technique was used to record action potential parameters and to study the effects of azimilide, BRL-32872 and E-4031. E-4031 was superfused at increasing concentrations (0.01, 0.03, 0.1 and 0.3 microM) in the absence or in the presence of verapamil (0.3 microM), nitrendipine (0.03 microM) or ryanodine (0.1 microM). RESULTS: BRL-32872 and azimilide induced a self-limited concentration-dependent increase in APD. The effect of BRL-32872 was not dependent on the stimulation frequency whereas the effect of azimilide was significantly reduced at the shorter BCL. E-4031 induced a concentration-dependent increase in APD at both stimulation BCL. The increase in APD was significantly more pronounced in fibres stimulated at a BCL of 1000 ms than in fibres stimulated at a BCL of 300 ms, characterising the reverse-frequency dependent effect of class III antiarrhythmic agents. The reverse-frequency dependence in action potential prolongation induced by E-4031 was significantly reduced in the presence of a low concentration of verapamil (0.3 microM), nitrendipine (0.03 microM), or ryanodine (0.1 microM. CONCLUSION: The results show that BRL-32872, in contrast to azimilide, does not induce the reverse-rate dependency of action potential prolongation typically produced by class III antiarrhythmic agents such as E-4031. Our results also show that reverse-rate dependency induced by E-4031 can be reduced by the simultaneous administration of a low concentration of a calcium channel antagonist or an inhibitor of the release of calcium from the sarcoplasmic reticulum. It is thus suggested that compounds with a suitable balance of potassium and calcium antagonistic activities may have less adverse effects than purely selective potassium channel blockers.

Action Potentials↗

PubMed2001

Comparative soil sampling in the Dornach site (Switzerland) for soil three-dimensional pollution description.

Fifteen institutions from 13 European countries and Switzerland participated in a comparative test sampling at the Dornach site, near Basel in Switzerland. They received the site description and were asked to develop their own sampling plans, based on their national guidelines for a three-dimensional description of the Pb, Zn, Cu and Cd pollution, with a maximum of 15 samples. The comparative sampling test took place in late August 1997. The sampling plans and records, provided by the participants, were compared and evaluated in terms of sampling strategy throughout the site, the sampling strategy inside the sampling unit, strategy at the sampling point and last minute alteration of the sampling plans in the field. The object of this was to define the similarities and the differences in the sampling plans and identify the crucial steps inducing error or uncertainty which should be harmonized throughout Europe. The number of the total composite samples varied from 4 to 16, while the number of sampling points varied from 4 to 224 and the sampling density varied from 0.25 to 16 single samples per 100 m2. The number of 10 x 10 m2 quadrats from which samples were taken varied from 3 to 56, out of the total 61. The number of sampling units varied between 3 and 12. The criteria in descending order of frequency were: both land use and pedology, land use, pedology. The majority of the national participants divided the sampling units into two or three sub-units, while seven participants collected replicate composite samples from the same sampling unit. Only one sampled from the existing profiles, eight national representatives ignored the plough depth. The sampling pattern inside the sampling unit was in descending order of frequency: random, point sampling, regular, 'W' and 'X' shaped sampling. The number of single samples in the composite varied from 1 to 20. Most of the national participants sampled to pre-defined (ad-hoc) sampling depths, while others sampled soil horizons and others both. The maximum soil depth sampled also varied from 20 to 117 cm. Most participants mixed in the top organic matter horizon while others sampled it separately. Most sampled separately the top Ah horizon in the forest while the rest mixed it with the underlying soil horizon. The last-minute sampling plan alterations were in: the sampling depth (nine), the movement of sampling points (five), the reduction of sub-samples in the composite sample (four), changes in the number of sampling units (three), ignoring the bottom sample (three), not sampling the L/H layer (three) although this was planned, unplanned sampling of the L/H layer (two) and changing the number of planned samples (two). This study has highlighted the need for soil sampling harmonization throughout Europe for pollution and soil quality determination.

Environmental Monitoring↗

PubMed1993

Evaluation of viral membrane fusion assays. Comparison of the octadecylrhodamine dequenching assay with the pyrene excimer assay.

Membrane fusion, in particular the fusion of enveloped viruses, is often measured with an assay based on octadecylrhodamine (R18) fluorescence dequenching. We have studied the association of R18 with membranes and used the R18 assay to measure virus fusion in model systems and in cultured cells. The results were compared with those of an assay based on the decrease in excimer fluorescence of pyrene-labeled phospholipids. For liposomes made from premixed R18 and phosphatidylcholine (PC), R18 fluorescence quenching was proportional to the concentration of the probe up to about 4 mol %. No quenching was found at very low concentrations of R18. However, various artificial and biological membranes labeled by the addition of R18 from an ethanolic solution showed significant quenching at such low R18 concentrations. Thus, some of the R18 was not randomly distributed but likely was associated with the surface of the membranes in the form of highly quenched clusters or micelles. Moreover, in influenza virus membranes, R18 appeared highly quenched at very low concentrations, indicative of the probe interacting with viral proteins. In contrast, pyrene-labeled PC incorporated in either liposomes or reconstituted viral membranes (virosomes) showed an excimer/monomer fluorescence ratio proportional to the concentration of probe. When intracellular membrane fusion was investigated with R18-labeled influenza virus or Semliki Forest virus (SFV), fluorescence dequenching was observed in the absence of fusion, most likely due to spontaneous probe exchange.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

PubMed1993

Population declines in the snowshoe hare and the role of stress.

Every 10 years snowshoe hare populations across the boreal forest of North America go through a population cycle, culminating in a decline lasting 4 or more years. We tested the hypothesis that snowshoe hares during the decline are in poor condition and less able to respond to challenges in their environment by examining the stress response of male hares. Three groups from February and May, 1991 (the second year of the hare decline in the Yukon), were compared: baseline hares were collected to obtain resting hormone levels; control hares were wild animals caught at randomly placed sites; and fed hares were wild animals caught on supplementary fed areas. The latter two groups were sequentially bled to examine their response to dexamethasone (DEX) followed by adrenocorticotropic hormone (ACTH). Trapping and handling were stressful to the experimental hares as the initial blood levels of total and free cortisol levels were higher (especially in controls), testosterone levels were lower, and glucose levels were higher in experimental hares than in baseline hares. Control and fed hares showed similar total and free cortisol responses, falling to low levels after the DEX injection and increasing rapidly in response to the ACTH injection. However, control hares were in worse condition than fed hares as indicated by the higher free cortisol levels and lower maximum corticosteroid-binding capacity (MCBC) in control hares. In addition, though testosterone levels fell in both groups in response to DEX, only the fed hares showed a large, transitory increase 30 min after the ACTH injection. An unexpected finding was a dramatic increase in MCBC levels 30 min after the ACTH injection in both experimental groups, but it was more pronounced in the fed group. We conclude that the pituitary-adrenocortical feedback system in hares from declining populations is operating normally and that they should be able to cope with acute, short-term stressors, but that they are in poor condition and are exposed to higher levels of free cortisol than fed hares in good condition.

Adrenal Cortex Hormones↗

PubMed2002

Geographical information systems and bootstrap aggregation (bagging) of tree-based classifiers for Lyme disease risk prediction in Trentino, Italian Alps.

The risk of exposure to Lyme disease in the province of Trento, Italian Alps, was predicted through the analysis of the distribution of Ixodes ricinus (L.) nymphs infected with Borrelia burgdorferi s.l. with a model based on bootstrap aggregation (bagging) of tree-based classifiers within a geographical information system (GIS). Data on L ricinus density assessed by dragging the vegetation in 438 sites during 1996 were cross-correlated with the digital cartography of a GIS, which included the variables altitude, exposure and slope, substratum, vegetation type and roe deer density. Ticks were more abundant at altitudes below 1,300 m a.s.l., in the presence of limestone and vegetation cover with thermophile deciduous forests and high densities of roe deer. A bootstrap aggregation procedure (bagging) was used to produce a model for the prediction of tick occurrence, the accuracy of which was tested on actual tick counts assessed by a further dragging campaign carried out during 1997 to determine infection prevalence and resulted in average 77%. Other tests of the model were made on additional and independent data sets. The prevalence of infection with Borrelia burgdorferi s.l, determined by polymerase chain reaction on 2,208 nymphs collected by random dragging in 245 transects selected within eight areas where the model predicted the occurrence of I. ricinus during 1997, was 17.5% and was positively correlated to tick abundance and roe deer density. These findings were used to relate the output of the bagged model (probability of tick occurrence) to the density of infected nymphs through a stepwise model selection procedure and thus to produce a GIS digital map of the probability distribution of infected nymphs in the Province of Trento at high resolution scale (50 by 50-m cell resolution). The application of the bagging procedure increased the accuracy of the prediction made by a single classification tree, a well-known classification method for the analysis of epidemiological data.

Animals↗

PubMed2004

[Population structure and distribution pattern of rare plant communities in Houhe Nature Reserve].

An investigation on the size structure and spatial pattern of 26 major tree species with a diameter at breast height (DBH) > or = 5 cm was made on a 1 hm2 fixed plot in the mixed evergreen and deciduous broad-leaved forest in Houhe National Nature Reserve of Central China. The results showed that 7 populations of the 26 species, i.e., Dipteronia sinensi, Aesculus wilsonii, Pterostyrax psilophyllus, Davidia involucrate, Euptelea pleiosperma, Tetracentron sinense and Cercidiphyllum japonicum, were rare endangered, species, and two of the 7 populations, T. sinense and C. japonicum, were very limited in numbers. The population structure of P. psilophyllus was in declining, and that of the rest was in growing. The spatial distribution pattern of P. psilophyllus, A. wilsonii and T. sinense was in random, and that of the others was clumped. Among the other 19 non-rare populations, the population structure of P. wilsonii was in declining, that of D. lotus, A. palmatum, A. wilsonii, A. franchetii, M. cuneifolia and H. dulcis was stable, and the rest was in growing. The spatial distribution pattern of D. lotus and H. dulcis was in random, and that of the others was clumped. On the whole, the growing populations were dominant, amounting to 61.54%, and the stable and declining populations accounted for 6.92% and 11.54%, respectively. The results of the two judging methods were consistent, showing that the distribution pattern of clumping (80.77%) was dominant, while the random and even distribution patterns were infrequent.

Aesculus↗

PubMed2003

A novel neurotropic expression vector based on the avirulent A7(74) strain of Semliki Forest virus.

Semliki Forest virus (SFV), an enveloped alphavirus of the family Togaviridae, infects a wide range of mammalian host cells. Most strains are neurotropic but differ in virulence. The authors took advantage of the nonpathogenic properties of SFV strain A7(74), cloned recently in their laboratory, and constructed a replication-proficient expression vector to target the central nervous system (CNS) for heterologous gene expression. The vector, termed VA7, was engineered to drive expression of foreign inserts through a second subgenomic promoter inserted in the viral 3' nontranslated region (NTR). Infectious virus was obtained by in vitro transcription and transfection into BHK cells, and was shown to direct synthesis of heterologous proteins in several mammalian cell lines. Although novel expression vehicle is not applicable for targeting specific cell populations within the CNS in its present form, in cultured rat hippocampal slices, VA7 encoding enhanced green fluorescent protein (EGFP) efficiently transduced pyramidal cells, interneurons, and glial cells. With prolonged time post infection, the number of EGFP-expressing neurons in hippocampal slices increased. Mice infected intraperitoneally with the recombinant virus remained completely asymptomatic but showed CNS expression of EGFP as evidenced by immunohistochemistry. SFV A7(74) is a nonintegrating virus, which gives rise to a randomly distributed, patchy infection of the adult CNS that is cleared within 10 days. With the advantage of noninvasive administration, the expression vector described in this work is thus applicable for short-term gene expression in the CNS.

Animals↗

PubMed2006

Forest stand age and the occurrence of chanterelle (Cantharellus) species in Oregon's central Cascade Mountains.

We describe watershed-scale habitat associations of three Cantharellus species with respect to stand age. During the 1998 autumn fruiting season we collected chanterelle sporocarps from 18 forest stands in and adjacent to the H.J. Andrews experimental forest in the central Cascade Mountains of Oregon. Sampled stands represented two age categories: old growth ( approximately 350+ y) and 40-60-y-old second growth naturally regenerated from clear-cut harvest. Old growth and second growth stands were spatially paired to reduce the chance of spurious habitat relationships caused by unmeasured correlated variables. We found stand age to be a good predictor of the distribution of C. subalbidus and C. formosus, but only marginally useful for predicting the occurrence of C. cascadensis. The odds that a randomly located chanterelle sporocarp will be C. subalbidus, compared to other chanterelles, are 3-23.5 times higher in old growth than in second growth. Alternatively, there is only a 4-38% chance that a randomly located sporocarp will be C. formosus in old growth. C. cascadensis was found to be uncommon throughout the study area and showed no significant habitat associations. The abundance of C. cascadensis increased substantially with decreasing elevation indicating that landscape features other than stand age may be more useful in predicting its occurrence.

Basidiomycota↗

PubMed2006

Molecular bacterial diversity of a forest soil under residue management regimes in subtropical Australia.

A major operational change in exotic pine plantations of subtropical Australia has been the decision to retain postharvest residues on site. A long-term field experiment was established in February 1996 to examine the impacts of residue management regimes [i.e. the postharvest residues removed (G0R), natural amount of residues retained (G1R) and residue quantity doubled and retained (G2R)] on tree growth (F1 hybrid pine) and sustainable soil management. Twelve soil samples, which included the above three residue regimes with four replicates, were collected at plantation age 6.4 years. A 16S rRNA gene clone library was established following soil community DNA extraction, polymerase chain reaction amplification and cloning. A total of 324 clones, including 27 from each sample, were randomly selected and sequenced to represent the bacterial composition and diversity of the clone library and thus the soil bacterial community under the residue management regimes. Phylogenetic analyses indicated that Acidobacteria (37.6%) and Proteobacteria (35.6%) were the dominant components of the soil bacterial community, followed by Actinobacteria (14.7%), Chlamydiae/Verrucomicrobia (7.3%), Unclassified Bacteria (3.8%) and Gemmatimonadetes (1.0%). Analysis of molecular variance revealed that there was no significant difference in bacterial composition and diversity among the residue management regimes or their replicated samples.

Actinobacteria↗

PubMed2001

Fine-scale spatial genetic structure of eight tropical tree species as analysed by RAPDs.

The fine-scale spatial genetic structure of eight tropical tree species (Chrysophyllum sanguinolentum, Carapa procera, Dicorynia guianensis, Eperua grandiflora, Moronobea coccinea, Symphonia globulifera, Virola michelii, Vouacapoua americana) was studied in populations that were part of a silvicultural trial in French Guiana. The species analysed have different spatial distribution, sexual system, pollen and seed dispersal agents, flowering phenology and environmental demands. The spatial position of trees and a RAPD data set for each species were combined using a multivariate genetic distance method to estimate spatial genetic structure. A significant spatial genetic structure was found for four of the eight species. In contrast to most observations in temperate forests, where spatial structure is not usually detected at distances greater than 50 m, significant genetic structure was found at distances up to 300 m. The relationships between spatial genetic structure and life history characteristics are discussed.

DNA, Plant↗

PubMed2001

Resolution of natural groups using iterative assignment tests: an example from two species of Australian native rats (Rattus).

Sympatric individuals of Rattus fuscipes and Rattus leucopus, two Australian native rats from the tropical wet forests of north Queensland, are difficult to distinguish morphologically and are often confused in the field. When we started a study on fine-scale movements of these species, using microsatellite markers, we found that the species as identified in the field did not form coherent genetic groups. In this study, we examined the potential of an iterative process of genetic assignment to separate specimens from distinct (e.g. species, populations) natural groups. Five loci with extensive overlap in allele distributions between species were used for the iterative process. Samples were randomly distributed into two starting groups of equal size and then subjected to the test. At each iteration, misassigned samples switched groups, and the output groups from a given round of assignment formed the input groups for the next round. All samples were assigned correctly on the 10th iteration, in which two genetic groups were clearly separated. Mitochondrial DNA sequences were obtained from samples from each genetic group identified by assignment, together with those of museum voucher specimens, to assess which species corresponded to which genetic group. The iterative procedure was also used to resolve groups within species, adequately separating the genetically identified R. leucopus from our two sampling sites. These results show that the iterative assignment process can correctly differentiate samples into their appropriate natural groups when diagnostic genetic markers are not available, which allowed us to resolve accurately the two R. leucopus and R. fuscipes species. Our approach provides an analytical tool that may be applicable to a broad variety of situations where genetic groups need to be resolved.

Alleles↗

PubMed2006

Life-history evolution in uncertain environments: bet hedging in time.

Many vertebrates, forest herbs, and trees exhibit both variable age at maturity and iteroparity as adaptations to uncertain environments. We analyze a stochastic model that combines these two life-history adaptations with density-dependent fertility. Results for a model with only iteroparity are consistent with previous work; environmental uncertainty favors adult survival over juvenile survival. This holds true even if there is a moderately strong convex trade-off between adult survival and fecundity, but the direction of selection can depend on which life-history trait is considered a random variable. A life history with only developmental delay favors juvenile survival in uncertain environments, consistent with previous models of seed banks. When both developmental delay and iteroparity are included in the model, both adaptations are favored in uncertain environments. Our simulations show that selection is not necessarily a runaway process in which either developmental delay or iteroparity is favored, as recently proposed by Tuljapurkar and Wiener, but rather that selection can favor both mechanisms. Invasion analysis shows that selective pressure on life-history delays increases as environmental variation increases. Reproductive delay and adult survival can be either adaptations or constraints. Natural-history studies that estimate model parameters can resolve this uncertainty.

Animals↗

PubMed2004

The role of weeds as sources of pharmaceuticals.

Primary tropical forest is generally considered to be the most likely habitat to discover new pharmaceuticals, due to high biodiversity and endemism. However, many indigenous groups rely on non-forested disturbed environments for medicinal plants. An ethnobotanical approach to drug discovery suggests that these disturbed environments may also harbor potentially useful medicinal compounds. Despite the neglect by current researchers to conduct drug discovery in disturbed environments, many source plants for modern pharmaceuticals thrive in disturbed areas. An analysis of the 101 plant species from which 119 contemporary pharmaceuticals are derived shows that at least 36 of these plants are considered weeds (Chi 2 = 343.34, P<0.0001). These results are an order of magnitude higher than what would be predicted by random occurrence of weeds in the modern pharmacopeia. Biochemical evidence based on literature is presented to explain this occurrence. This finding suggests that disturbed habitats may be important areas to search for novel compounds in drug discovery.

Ethnobotany↗

PubMed2003

Ubiquity and persistence of Escherichia coli in a Midwestern coastal stream.

Dunes Creek, a small Lake Michigan coastal stream that drains sandy aquifers and wetlands of Indiana Dunes, has chronically elevated Escherichia coli levels along the bathing beach near its outfall. This study sought to understand the sources of E. coli in Dunes Creek's central branch. A systematic survey of random and fixed sampling points of water and sediment was conducted over 3 years. E. coli concentrations in Dunes Creek and beach water were significantly correlated. Weekly monitoring at 14 stations during 1999 and 2000 indicated chronic loading of E. coli throughout the stream. Significant correlations between E. coli numbers in stream water and stream sediment, submerged sediment and margin, and margin and 1 m from shore were found. Median E. coli counts were highest in stream sediments, followed by bank sediments, sediments along spring margins, stream water, and isolated pools; in forest soils, E. coli counts were more variable and relatively lower. Sediment moisture was significantly correlated with E. coli counts. Direct fecal input inadequately explains the widespread and consistent occurrence of E. coli in the Dunes Creek watershed; long-term survival or multiplication or both seem likely. The authors conclude that (i) E. coli is ubiquitous and persistent throughout the Dunes Creek basin, (ii) E. coli occurrence and distribution in riparian sediments help account for the continuous loading of the bacteria in Dunes Creek, and (iii) ditching of the stream, increased drainage, and subsequent loss of wetlands may account for the chronically high E. coli levels observed.

Colony Count, Microbial↗

PubMed2004

Are boreal ecosystems susceptible to alien plant invasion? Evidence from protected areas.

Although biological invasion by alien species is a major contributor to loss of indigenous biological diversity, few studies have examined the susceptibility of the boreal biome to invasion. Based on studies of other ecosystems, we hypothesized that alien plants will be restricted to disturbed areas near human activity and will not be found in natural areas of boreal ecosystems in Gros Morne National Park (Canada), a protected area experiencing a wide range of disturbance regimes. The distribution of alien plants in the region was evaluated using surveys, and study sites were established in naturally and anthropogenically disturbed habitats that had been invaded. Within study sites, randomization tests evaluated the importance of disturbance to alien plant invasion by examining changes in environmental conditions and species abundance within various disturbance regimes, while the importance of site characteristics limiting the distribution of alien plants were examined using Canonical Correspondence Analysis. Consistent with studies in a variety of biomes, areas of high disturbance and human activity had the greatest abundance of resources and the highest percentage of alien species. However, contrary to our hypothesis, natural areas of boreal ecosystems were found susceptible to alien plant invasion. Vegetation types vulnerable to invasion include forests, riparian areas, fens, and alpine meadows. Natural disturbance occurring in these vegetation types caused increases in bare ground and/or light availability facilitating alien plant invasion. Although high soil pH was associated with alien plants in these areas, disturbance was not found to cause changes in soil pH, suggesting susceptibility to invasion is pre-determined by bedrock geology or other factors influencing soil pH. Moose (Alces alces), a non-native herbivore, acts as the primary conduit for alien plant invasion in GMNP by dispersing propagules and creating or prolonging disturbance by trampling and browsing vegetation. The recurrent nature of disturbance within the boreal biome and its interaction with site conditions and herbivores enables alien plants to persist away from areas of high human activity. Managers of natural lands should monitor such interactions to decrease the invasion potential of alien plants.

Analysis of Variance↗

PubMed1995

Cattle grazing a riparian mountain meadow: effects of low and moderate stocking density on nutrition, behavior, diet selection, and plant growth response.

Twelve ruminally cannulated and six intact crossbred beef steers were used in a randomized complete block design to evaluate the effects of stocking density of a riparian pasture in the Sierra Nevada mountains on grazing behavior, dietary selection, forage intake, digesta kinetics, and growth rates of Carex nebraskensis and Juncus balticus. Nine .5-ha pastures were assigned to one of three treatments: ungrazed (CON) or grazed to leave either 1,500 kg/ha (LOW) or 1,000 kg/ha (MOD). Two collections were conducted during the summer of 1992 (following winter drought) and 1993 (following above-average winter precipitation). Standing crop biomass was greater (P < .05) in grazed pastures than in CON pastures at initiation of grazing in 1992 but not in 1993. After grazing in both 1992 and 1993, a treatment x intrapasture location interaction was noted (P < .05). Tiller growth rates in both 1992 and 1993 were affected (P < .05) by a treatment x growth period interaction. Stocking density did not alter (P > .10) botanical or chemical composition of the diet in 1992, and only minor differences were noted (P < .05) in 1993. Forage intake, passage rate measures, and total time spent loafing did not differ (P > .10) between LOW and MOD steers. Within the mid-meadow area in 1992, loafing time was greater (P< .05) for MOD steers than for LOW steers. In 1993, a treatment x trial interaction was noted for loafing time in all three areas. Total time spent grazing was greater (P < .05) for MOD steers than for LOW steers in 1992 and was affected (P < .05) by a treatment x trial interaction in 1993. In 1992 grazing time along the streamside was greater (P < .05) for LOW steers than for MOD steers, and significant treatment x trial interactions were noted for grazing time spent along the forest edge and mid-meadow areas. In 1993, only streamside grazing time was influenced by treatment being greater (P < .05) for MOD steers than for LOW steers. In general, our data suggest that management decisions to reduce stocking densities may force cattle to congregate along streambanks and to concentrate grazing and loafing activities in those areas.

Animal Feed↗

PubMed2005

Among- and within-patch components of genetic diversity respond at different rates to habitat fragmentation: an empirical demonstration.

Habitat fragmentation is a ubiquitous by-product of human activities that can alter the genetic structure of natural populations, with potentially deleterious effects on population persistence and evolutionary potential. When habitat fragmentation results in the subdivision of a population, random genetic drift then leads to the erosion of genetic diversity from within the resulting subpopulation, random genetic drift then leads to the erosion of genetic diversity from within the resulting subpopulations and greater genetic divergence among them. Theoretical and simulation analyses predict that these two main genetic effects of fragmentation, greater differentiation among resulting subpopulation and reduced genetic diversity within them, will proceed at very different rates. Despite important implications for the interpretation of genetics data from fragmented populations, empirical evidence for this phenomenon has been lacking. In this analysis, we carry out an empirical study in population of an alpine meadow-dwelling butterfly, which have become fragmented increasing forest cover over five decades. We show that genetic differentiation among subpopulations (G(ST)) is most highly correlated with contemporary forest cover, while genetics diversity within subpopulation (expected heterozygosity) is better correlated with the spatial pattern of forest cover 40 years in the past. Thus, where habitat fragmentation has occurred in recent decades, genetic differentiation among subpopulation can be near equilibrium while contemporary measures of within subpopulation diversity may substantially overestimate the equilibrium values that will eventually be attained.

Alberta↗

PubMed2000

Qualified testing of single-locus codominant inheritance using single tree progenies.

In forest trees, classical techniques of studying modes of inheritance are usually not feasible due to the difficulty of performing controlled crosses. The limited information on inheritance extractable from readily available data, such as the large progenies collectable from single seed trees, must be compensated by the design of appropriately parameterized models. For this purpose, a system analytic approach is used to develop a new inferential framework for testing a single-locus codominant mode of inheritance of genetic traits using the inferred genotypes within progenies of single trees of inferred heterozygous genotype. Model assumptions are random gametic fusion between the local gamete pools and absence of postzygotic selection; ovule segregation distortion is allowed. The method yields estimates of the allele frequencies in both local gamete pools. Since tests of modes of inheritance must be tests of models rather than of parameters, the utility of the classical statistical testing procedures is limited, particularly concerning the qualification of a sampling method to attain a preassigned level of precision. Consistent application of this principle makes it possible to design qualified sampling methods prior to the actual experiment as well as to specify qualification levels for tests of completed experiments.

Alleles↗