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Impact of aerosol indirect effect on surface temperature over East Asia.

A regional coupled climate-chemistry-aerosol model is developed to examine the impacts of anthropogenic aerosols on surface temperature and precipitation over East Asia. Besides their direct and indirect reduction of short-wave solar radiation, the increased cloudiness and cloud liquid water generate a substantial downward positive long-wave surface forcing; consequently, nighttime temperature in winter increases by +0.7 degrees C, and the diurnal temperature range decreases by -0.7 degrees C averaged over the industrialized parts of China. Confidence in the simulated results is limited by uncertainties in model cloud physics. However, they are broadly consistent with the observed diurnal temperature range decrease as reported in China, suggesting that changes in downward long-wave radiation at the surface are important in understanding temperature changes from aerosols.

Journal Article↗

Model-based estimates of risks of disease transmission and economic costs of seven injection devices in sub-Saharan Africa.

OBJECTIVE: To investigate and compare seven types of injection devices for their risks of iatrogenic transmission of bloodborne pathogens and their economic costs in sub-Saharan Africa. METHODS: Risk assumptions for each device and cost models were constructed to estimate the number of new hepatitis B virus (HBV) and human immunodeficiency virus (HIV) infections resulting from patient-to-patient, patient-to-health care worker, and patient-to-community transmission. Costs of device purchase and usage were derived from the literature, while costs of direct medical care and lost productivity from HBV and HIV disease were based on data collected in 1999 in Côte d'Ivoire, Ghana, and Uganda. Multivariate sensitivity analyses using Monte Carlo simulation characterized uncertainties in model parameters. Costs were summed from both the societal and health care system payer's perspectives. FINDINGS: Resterilizable and disposable needles and syringes had the highest overall costs for device purchase, usage, and iatrogenic disease: median US dollars 26.77 and US dollars 25.29, respectively, per injection from the societal perspective. Disposable-cartridge jet injectors and automatic needle-shielding syringes had the lowest costs, US dollars 0.36 and US dollars 0.80, respectively. Reusable-nozzle jet injectors and auto-disable needle and syringes were intermediate, at US dollars 0.80 and US dollars 0.91, respectively, per injection. CONCLUSION: Despite their nominal purchase and usage costs, conventional needles and syringes carry a hidden but huge burden of iatrogenic disease. Alternative injection devices for the millions of injections administered annually in sub-Saharan Africa would be of value and should be considered by policy-makers in procurement decisions.

Africa South of the Sahara↗

High precision canonical Monte Carlo determination of the growth constant of square lattice trees.

The number of lattice bond trees in the square lattice (counted modulo translations), t(n), is a basic quantity in lattice statistical mechanical models of branched polymers. This number is believed to have asymptotic behavior given by t(n) approximately Alambda(n)n(-theta), where A is an amplitude, lambda is the growth constant, and theta the entropic exponent. In this paper, we show that lambda and theta can be determined to high accuracy by using a canonical Monte Carlo algorithm; we find that lambda=5.1439+/-0.0025, theta=1.014+/-0.022, where the error bars are a combined 95% statistical confidence interval and an estimated systematic error due to uncertainties in modeling corrections to scaling. If one assumes the "exact value" theta=1 and then determines lambda, then the above estimate improves to lambda=5.143 39+/-0.000 72. In addition, we also determine the longest path exponent rho and the metric exponent nu from our data: rho=0.74000+/-0.00062, nu=0.6437+/-0.0035, with error bars similarly a combined 95% statistical confidence interval and an estimate of the systematic error.

Journal Article↗

Evaluating concentration estimation errors in ELISA microarray experiments.

BACKGROUND: Enzyme-linked immunosorbent assay (ELISA) is a standard immunoassay to estimate a protein's concentration in a sample. Deploying ELISA in a microarray format permits simultaneous estimation of the concentrations of numerous proteins in a small sample. These estimates, however, are uncertain due to processing error and biological variability. Evaluating estimation error is critical to interpreting biological significance and improving the ELISA microarray process. Estimation error evaluation must be automated to realize a reliable high-throughput ELISA microarray system. In this paper, we present a statistical method based on propagation of error to evaluate concentration estimation errors in the ELISA microarray process. Although propagation of error is central to this method and the focus of this paper, it is most effective only when comparable data are available. Therefore, we briefly discuss the roles of experimental design, data screening, normalization, and statistical diagnostics when evaluating ELISA microarray concentration estimation errors. RESULTS: We use an ELISA microarray investigation of breast cancer biomarkers to illustrate the evaluation of concentration estimation errors. The illustration begins with a description of the design and resulting data, followed by a brief discussion of data screening and normalization. In our illustration, we fit a standard curve to the screened and normalized data, review the modeling diagnostics, and apply propagation of error. We summarize the results with a simple, three-panel diagnostic visualization featuring a scatterplot of the standard data with logistic standard curve and 95% confidence intervals, an annotated histogram of sample measurements, and a plot of the 95% concentration coefficient of variation, or relative error, as a function of concentration. CONCLUSIONS: This statistical method should be of value in the rapid evaluation and quality control of high-throughput ELISA microarray analyses. Applying propagation of error to a variety of ELISA microarray concentration estimation models is straightforward. Displaying the results in the three-panel layout succinctly summarizes both the standard and sample data while providing an informative critique of applicability of the fitted model, the uncertainty in concentration estimates, and the quality of both the experiment and the ELISA microarray process.

Algorithms↗

Back-to-the-future: a fresh policy initiative for fisheries and a restoration ecology for ocean ecosystems.

'Back-to-the-future' (BTF) is an integrative approach to a restoration ecology of the oceans that attempts to solve the fisheries crisis. To this end, it harnesses the latest understanding of ecosystem processes developments in whole ecosystem simulation modelling, and insight into the human dimension of fisheries management. BTF includes new methods for describing past ecosystems, designing fisheries that meet criteria for sustainability and responsibility, and evaluating the costs and benefits of fisheries in restored ecosystems. Evaluation of alternative policy choices, involving trade-offs between conservation and economic values, employs a range of economic, social and ecological measures. Automated searches maximize values of objective functions, and the methodology includes analyses of model parameter uncertainty. Participatory workshops attempt to maximize compliance by fostering a sense of ownership among all stakeholders. Some challenges that have still to be met include improving methods for quantitatively describing the past, reducing uncertainty in ecosystem simulation techniques and in making policy choices robust against climate change. Critical issues include whether past ecosystems make viable policy goals, and whether desirable goals may be reached from today's ecosystem. Examples from case studies in British Columbia, Newfoundland and elsewhere are presented.

Animals↗

A probabilistic arsenic exposure assessment for children who contact chromated copper arsenate (CCA)-treated playsets and decks, Part 2: Sensitivity and uncertainty analyses.

A probabilistic model (SHEDS-Wood) was developed to examine children's exposure and dose to chromated copper arsenate (CCA)-treated wood, as described in Part 1 of this two-part article. This Part 2 article discusses sensitivity and uncertainty analyses conducted to assess the key model inputs and areas of needed research for children's exposure to CCA-treated playsets and decks. The following types of analyses were conducted: (1) sensitivity analyses using a percentile scaling approach and multiple stepwise regression; and (2) uncertainty analyses using the bootstrap and two-stage Monte Carlo techniques. The five most important variables, based on both sensitivity and uncertainty analyses, were: wood surface residue-to-skin transfer efficiency; wood surface residue levels; fraction of hand surface area mouthed per mouthing event; average fraction of nonresidential outdoor time a child plays on/around CCA-treated public playsets; and frequency of hand washing. In general, there was a factor of 8 for the 5th and 95th percentiles and a factor of 4 for the 50th percentile in the uncertainty of predicted population dose estimates due to parameter uncertainty. Data were available for most of the key model inputs identified with sensitivity and uncertainty analyses; however, there were few or no data for some key inputs. To evaluate and improve the accuracy of model results, future measurement studies should obtain longitudinal time-activity diary information on children, spatial and temporal measurements of residue and soil concentrations on or near CCA-treated playsets and decks, and key exposure factors. Future studies should also address other sources of uncertainty in addition to parameter uncertainty, such as scenario and model uncertainty.

Arsenates↗

To cope with uncertainty: stroke patients' use of temporal models in narratives.

Stroke victims have to cope with a disrupted autobiography and anxiety because of an uncertain future. Professionals share this uncertainty. The patients reveal their experiences in narratives, and when they try to regain coherence and confidence in life, they use narratives in the reconstructions. Because they have a temporal problem, time might be an important issue in these narratives. The aim of this study was to elucidate the use of time models in stroke patients' narratives. Nineteen stroke patients, who had recently been discharged to their homes after the stroke, accepted to participate in the study. Their age span was between 56 and 89 years. They had lived active urban lives before the stroke, and poststroke only three had more serious physical impairment, and none was demented. They were asked to talk about their present life and their conceptions of future life. The interviews were audio-taped and transcribed verbatim and narratives that referred to temporal aspects were thematically analysed with reference to narrative time models. The stroke accident had caused an autobiographical disruption and a temporal split because of a new awareness of human temporality and an uncertainty of the future. Confronted with these problems of time, the stroke victims constructed narratives based on the time models: time cycles and dissolution of time limits, exchange of time and exclusion from time. Hence, the time models worked as tools when the stroke victims re-established coherence in their present and future life. Stroke patients handled an uncertain future by using temporal models in their narratives. Professionals can support stroke patients by reinforcing these models.

Adaptation, Psychological↗

RESEARCH: Assessing Uncertainty in Estimates of Nitrogen Loading to Estuaries for Research, Planning, and Risk Assessment.

/ There can be considerable uncertainty associated with calculations of nutrient loading to estuaries from their watersheds, arising from uncertainty in the variables used in the calculation. Analysis of uncertainty is particularly important in the context of planning and management, where such information can be useful in helping make decisions about development in the coastal zone and in risk assessment, where probability of worse-case extremes may be relevant. This fact has been largely ignored when loading calculations have been made, presumably because both uncertainty estimates for the input variables and a standard method were lacking. Parametric (propagation for normal error estimates) and nonparametric methods (bootstrap and enumeration of combinations) to assess the uncertainty in calculated rates of nitrogen loading were compared, based on the propagation of uncertainty observed in the variables used in the calculation. In addition, since such calculations are often based on literature surveys rather than random replicate measurements for the site in question, error propagation was also compared using the uncertainty of the sampled population (e.g., standard deviation) as well as the uncertainty of the mean (e.g., standard error of the mean). Calculations for the predicted nitrogen loading to a shallow estuary (Waquoit Bay, MA) were used as an example. The previously estimated mean loading from the watershed (5,400 ha) to Waquoit Bay (600 ha) was 23,000 kg N yr(-1). The mode of a nonparametric estimate of the probability distribution differed dramatically, equaling only 70% of this mean. Repeated observations were available for only 8 of the 16 variables used in our calculation. We estimated uncertainty in model predictions by treating these as sample replicates. Parametric and nonparametric estimates of the standard error of the mean loading rate were 12-14%. However, since the available data include site-to-site variability, as is often the case, standard error may be an inappropriate measure of confidence. The standard deviations were around 38% of the loading rate. Further, 95% confidence intervals differed between the nonparametric and parametric methods, with those of the nonparametric method arranged asymmetrically around the predicted loading rate. The disparity in magnitude and symmetry of calculated confidence limits argue for careful consideration of the nature of the uncertainty of variables used in chained calculations. This analysis also suggests that a nonparametric method of calculating loading rates using most frequently observed values for variables used in loading calculations may be more appropriate than using mean values. These findings reinforce the importance of including assessment of uncertainty when evaluating nutrient loading rates in research and planning. Risk assessment, which may need to consider relative probability of extreme events in worst-case scenarios, will be in serious error using normal estimates, or even the nonparametric bootstrap. A method such as our enumeration of combinations produces a more reliable distribution of risk.

Journal Article↗

Application of fuzzy logic techniques for the qualitative interpretation of preferences in a collective questionnaire for users of wheelchairs.

Active participation of users in the evaluation of technical aids is essential, since they are part of the interface with the system and constitute a fundamental source of design criteria. In this study, 88 active users of wheelchairs were interviewed by means of a written questionnaire about their opinion concerning the adaptation of his/her wheelchair to the office workplace. A conceptual framework was introduced linking objective measurements of the user-wheelchair interface to the subjective preferences expressed by the user. Discriminant analysis was used in order to select and quantify the importance of the most significant factors influencing the user's opinions. Fuzzy logic was introduced for the qualitative interpretation of the relationship between those significant factors, based on an inductive algorithm for generating fuzzy rules. Fuzzy logic enables a person to model the uncertainty within the subjective formulation of knowledge or opinions. From the results, a mismatch between actual performance of conventional wheelchairs and requirements of office work became evident. The proposed methods make it possible to determine reliable rules explaining subjective preferences; thus, they provide a flexible means of interpreting user questionnaires and obtaining new design criteria.

Equipment Design↗

Partitioning of polychlorinated biphenyls between Arctic seawater and size-fractionated zooplankton.

Concentrations of hydrophobic organic contaminants in zooplankton have been hypothesized to be governed by either near-equilibrium partitioning with surrounding water, growth dilution, or biomagnification. Concentrations of 17 polychlorinated biphenyls (PCBs) were measured in size-fractionated zooplankton, in phytoplankton (> 0.7 microm), and in the dissolved water phase (< 0.7 microm) in the surface water of the northern Barents Sea marginal ice zone east and north of Spitsbergen (Norway) and in the central Arctic Ocean at 89 degrees N. The linear partition model was used to indirectly assess if PCBs were equilibrated between water and the extractable organic matter (EOM) of zooplankton. As an independent test, the relation between the EOM-normalized partition coefficient (log K(EOM)) and trophic level (TL) of the zooplankton (based on delta 15N) was investigated. All log K-log K(OW) regressions were significant (n=18, p < 0.05, r2 = 0.65-0.95), being consistent with near-equilibrium partitioning and indirectly suggesting the absence of biomagnification. No correlation was found between log K(EOM) and TL, further supporting the apparent absence of biomagnification in zooplankton. One implication of these results is a reduced uncertainty in modeling of food web uptake, in which kinetic parameterizations of biodilution or biomagnification in zooplankton may be replaced by a simpler parameterization based on equilibrium partitioning.

Animals↗

Ranking stormwater control strategies under uncertainty: the River Cam case study.

Monte Carlo simulations taking uncertainty in model parameters into account were performed on a river water quality model. The simulation results were used to rank wastewater treatment plant control strategies according to their impacts on river water quality. This impact is estimated by the maximum ammonium concentration and by the duration of dissolved oxygen concentration below 4 g/m3 at the downstream boundary of the system. The strategies were classified according to the previous criteria using 4 ranking methods, one of them being based on the concept of stochastic dominance. Results are presented for a case study based on a 10 km stretch of the River Cam as it passes through the city of Cambridge in Eastern England. It was found that ranking was robust in face of uncertainty in the parameter values for the control strategies considered as being superior in terms of river water quality impacts.

Ammonia↗

Multireader, multicase receiver operating characteristic analysis: an empirical comparison of five methods.

RATIONALE AND OBJECTIVES: Several statistical methods have been developed for analyzing multireader, multicase (MRMC) receiver operating characteristic (ROC) studies. The objective of this article is to increase awareness of these methods and determine if their results are concordant for published datasets. MATERIALS AND METHODS: Data from three previously published studies were reanalyzed using five MRMC methods. For each method the 95% confidence intervals (CIs) for the mean of the readers' ROC areas for each diagnostic test, the P value for the comparison of the diagnostic tests' mean accuracies, and the 95% CIs for the mean difference in ROC areas of the diagnostic tests were reported. RESULTS: Important differences in P values and CIs were seen when using parametric versus nonparametric estimates of accuracy, and there were the expected differences for random-reader versus fixed-reader models. Controlling for these differences, the Dorfman-Berbaum-Metz (DBM), Obuchowski-Rockette, Beiden-Wagner-Campbell, and Song's multivariate Wilcoxon-Mann-Whitney (WMW) methods gave almost identical results for the fixed-reader model. For the random-reader model, the DBM, Obuchowski-Rockette, and Beiden-Wagner-Campbell methods yielded approximately the same inferences, but the CIs for the Beiden-Wagner-Campbell method tend to be broader. Ishwaran's hierarchical ROC sometimes yielded significance not found with other methods. Song's modification of DBM's jack-knifing algorithm sometimes led to different conclusions than the original DBM algorithm. CONCLUSION: In choosing and applying MRMC methods, it is important to recognize: (1) the distinction between random-reader and fixed-reader models, the uncertainties accounted for by each, and thus the level of generalizeability expected from each; (2) assumptions made by the various MRMC methods; and (3) limitations of a five- or six-reader study when the reader variability is great.

Analysis of Variance↗

Insulin minimal model indexes and secretion: proper handling of uncertainty by a Bayesian approach.

The identification of the insulin minimal model (MM) for the estimation of insulin secretion rate (ISR) and physiological indexes (e.g. beta-cell sensitivity) requires the knowledge of C-peptide (CP) kinetics. The four parameters of the two-compartment model of CP kinetics in a given individual can be derived either from an additional bolus experiment or, more frequently, from a population model. However, in both situations, the CP kinetics is uncertain and, in MM identification, it should be treated as such. This paper shows how to handle CP kinetics uncertainty by using a Bayesian methodology. In seven subjects, MM indexes and ISR were estimated together with their confidence intervals, using either the bolus data or the population model to assess CP kinetics. The two main results that arise from the application of the new methodology are: (i) the use of the population model in place of the bolus data to determine CP kinetics does not affect, on average, the point estimates of ISR profile and MM parameters but only the confidence intervals which becomes wider (less than 50%); (ii) in both the bolus and population situation neglecting the uncertainty of CP kinetics, as done in MM literature so far, introduces no bias, on average, on point estimates of MM indexes but only an underestimation of confidence intervals.

Adult↗

Frequentist model-averaged estimators and tests for univariate twin models.

Parameter estimates from analyses of univariate twin data usually do not reflect the uncertainty due to the model selection phase of the data analysis. To address the effect of model selection uncertainty on parameter estimates, we introduce frequentist model-averaged estimators for univariate twin data analysis that use information-theoretic criteria to assign model weights. We conduct simulation studies to examine the performance of model-averaged estimators of additive genetic variance, and for tests for additive genetic variance based on model-averaged estimators. In simulation studies with small or moderate sample sizes, model-averaged estimators of additive genetic variance typically have lower mean-squared error than either (i) estimators from individual twin models, or (ii) estimators obtained from a decision procedure where the best-fitting model from likelihood-ratio testing is used to estimate additive genetic variance. For each sample size simulated, bootstrap tests based on model-averaged estimators have higher power to detect additive genetic variance than currently-used tests in most cases.

Analysis of Variance↗

Cryptosporidiosis susceptibility and risk: a case study.

Regional estimates of cryptosporidiosis risks from drinking water exposure were developed and validated, accounting for AIDS status and age. We constructed a model with probability distributions and point estimates representing Cryptosporidium in tap water, tap water consumed per day (exposure characterization); dose response, illness given infection, prolonged illness given illness; and three conditional probabilities describing the likelihood of case detection by active surveillance (health effects characterization). The model predictions were combined with population data to derive expected case numbers and incidence rates per 100,000 population, by age and AIDS status, borough specific and for New York City overall in 2000 (risk characterization). They were compared with same-year surveillance data to evaluate predictive ability, assumed to represent true incidence of waterborne cryptosporidiosis. The predicted mean risks, similar to previously published estimates for this region, overpredicted observed incidence-most extensively when accounting for AIDS status. The results suggest that overprediction may be due to conservative parameters applied to both non-AIDS and AIDS populations, and that biological differences for children need to be incorporated. Interpretations are limited by the unknown accuracy of available surveillance data, in addition to variability and uncertainty of model predictions. The model appears sensitive to geographical differences in AIDS prevalence. The use of surveillance data for validation and model parameters pertinent to susceptibility are discussed.

AIDS-Related Opportunistic Infections↗

A general model for the propagation of uncertainty in measurements into heat transfer simulations and its application to cryosurgery.

This report presents a technique for estimating the propagation of uncertainty in measurements into mathematical simulations of heat transfer. The motivation for this report is to show the dramatic uncertainty associated with estimating the value of the so-called "lethal temperature," even in a case where a perfect correlation appears to exist between histo-pathologic observations and a corresponding heat transfer simulation. Although the example presented in this report relates to cryosurgery, the technique proposed in this report is rather general and can be applied to any heat transfer problem. The uncertainty analysis presented in this report can be considered as an extension of the well-known concept of the rule of the square root of the sum of the square errors. A comparison of the new technique with the worst case scenario concept is also presented. In conclusion, it is recommended that the proposed technique be routinely applied when presenting simulated results, whether as a part of a theoretical study, or in comparison with experimental data.

Animals↗

Pesticide concentrations in air and precipitation in the Netherlands.

Atmospheric deposition may be an important source of persistent organic compounds (POP) and pesticides for the Dutch coastal and inland waters. Current estimates of the atmospheric input have been made using atmospheric dispersion models. The uncertainty is however large. A project was defined with the aim to assess the input on the basis of measurements. For a period of two years (1999-2001) a monitoring network was operated. At eighteen stations, located across the whole country, air and precipitation samples were taken on a weekly and monthly basis. In these samples the concentrations of pesticides, PCB's and PAH's were determined. Up to 50 different pesticides were observed in precipitation and air. The concentration of 17 of these in precipitation exceeded the maximum permissible level for surface water and 22 exceeded the standard for drinking water of 100 ng l(-1). The input from the atmosphere to Dutch inland waters appeared to be as large as the input of pesticides by other sources such as spray drift. Model calculations were also carried out to identify the sources of these compounds. The occurrence of atrazine could be related to emissions outside the Netherlands.

Air Pollutants↗

A guidance for assessing and communicating uncertainties.

In the daily practice of science for policy, as experienced by governmental agencies which inform the policy and the public on the state and outlook of the environment, there is a pressing need for guidance in assessing and communicating uncertainties. This need extends beyond the quantitative assessment of uncertainties in model results, and focuses on the entire process of environmental assessment, running from problem framing towards reporting the results of the study. Using the Netherlands Environmental Assessment Agency (RIVM/MNP) as a case, the development, structure and content of such a guidance system is highlighted. Conditions for a successful implementation of the guidance system are discussed, and some prospects for future work are outlined.

Communication↗