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At least 487 records · Page 27Linked to original sources

PubMed2004

Immunohistochemical localization of cardio-active neuropeptides in the heart of a living fossil, Nautilus pompilius L. (Cephalopoda, Tetrabranchiata).

Neuropeptides play an important role in modulating the effects of neurotransmitters such as acetylcholine and noradrenaline in the heart and the vascular system of vertebrates and invertebrates. Various neuropeptides, including substance P (SP), vasoactive intestinal polypeptide (VIP) and FMRFamide, have been localized in the brain in cephalopods and the neurosecretory system of the vena cava. Previous studies involving cephalopods have mainly focussed on the modern, coleoid cephalopods, whereas little attention was paid to the living fossil Nautilus. In this study, the distributions of the peptides related to tachykinins (TKs) and the high affinity receptor for the best characterized TK substance P (tachykinin NK-1), VIP, as well as FMRFamide were investigated in the heart of Nautilus pompilius L. by immunohistochemistry. TK-like immunoreactivity (TK-LI) was seen associated to a sub-population of hemocytes, VIP-LI glial cells in larger nerves entering the heart, whereas FMRFamide immunoreactivity was distributed throughout the entire heart, including the semilunar atrioventricular valves. The pattern of FMRFamide immunoreactivity matched that of Bodian silver staining for nervous tissue. The NK-1-LI receptor was located on endothelial cells, which were also positive for endothelial nitric oxide synthase-LI (eNOS). The results indicate that neuropeptides may be involved in the regulation of the Nautilus heart via different mechanisms, (1) by direct interaction with myocardial receptors (FMRFamide), (2) by interacting with the nervus cardiacus (VIP-related peptides) and (3) indirectly by stimulating eNOS in the endothelium throughout the heart (TK-related peptides).

Animals↗

PubMed1995

A nuclear 'fossil' of the mitochondrial D-loop and the origin of modern humans.

Mammalian mitochondrial DNA sequences evolve more rapidly than nuclear sequences. Although the rapid rate of evolution is an advantage for the study of closely related species and populations, it presents a problem in situations where related species, used as outgroups in phylogenetic analyses, have accumulated so much change that multiple substitutions obliterate the phylogenetic information. However, mitochondrial DNA sequences are frequently inserted into the nuclear genome, where they presumably evolve as nuclear pseudogene sequences and therefore more slowly than their mitochondrial counterparts. Such sequences thus represent molecular 'fossils' that could shed light on the evolution of the mitochondrial genome and could be used as outgroups in situations where no appropriate outgroup species exist. Here we show that human chromosome 11 carries a recent integration of the mitochondrial control region that can be used to gain further insight into the origin of the human mitochondrial gene pool.

Animals↗

PubMed2000

Fossilized high pressure from the Earth's deep interior: the coesite-in-diamond barometer.

Mineral inclusions in diamonds provide an important source of information about the composition of the continental lithosphere at depths exceeding 120-150 km, i.e., within the diamond stability field. Fossilized high pressures in coesite inclusions from a Venezuela diamond have been identified and measured by using laser Raman and synchrotron x-ray microanalytical techniques. Micro-Raman measurements on an intact inclusion of remnant vibrational band shifts give a high confining pressure of 3.62 (+/-0.18) GPa. Synchrotron single-crystal diffraction measurements of the volume compression are in accord with the Raman results and also revealed direct structural information on the state of the inclusion. In contrast to olivine and garnet inclusions, the thermoelasticity of coesite favors accurate identification of pressure preservation. Owing to the unique combination of physical properties of coesite and diamond, this "coesite-in-diamond" geobarometer is virtually independent of temperature, allowing an estimation of the initial pressure of Venezuela diamond formation of 5.5 (+/-0.5) GPa.

Journal Article↗

PubMed1969

The composition of fossil oyster shell proteins.

Analyses of the protein residues recovered from fossil oyster shells of ages from the Pleistocene through the Cretaceous show substantially the same amino acids as are present in modern proteins. The amount of these residues declines sharply to the Oligocene, after which it proceeds more slowly. These older proteins contain relatively less aspartic acid and glycine than do their younger counterparts.

Amino Acids↗

PubMed1970

Oxygen-collagen priority and the early metazoan fossil record.

The thesis is developed that a low oxygen level Precambrian atmosphere presented early-evolving metazoan organisms with physiological connective tissue priorities resulting from the important molecular oxygen requirements in the biosynthesis of collagen hydroxyproline. Shells, cuticles, and carapaces which are not mandatory metazoan prerequisites but which directly or indirectly demand substantial connective tissue collagen are oxygen expensive, low priority features. A marked increase in atmospheric oxygen level near the beginning of the Paleozoic would eliminate oxygen-collagen priorities simultaneously and on a world-wide basis in all metazoan stocks providing evolutionary pressure for enlarged musculatures and associated "hard parts." This could explain the sudden presence in the fossil record of the early Cambrian of advanced and diversified metazoans, the earlier forms of which were essentially unpreservable.

Animals↗

PubMed1975

Nonprevalence of biochemical fossils in kerogen from pre-Phanerozoic sediments.

Evidence of biochemical and geochemical evolution was sought in insoluble carbonaceous matter from 30 selected pre-Phanerozoic sediments ranging in age from about 3.8 to about 0.7 x 10(9) years. The carbon isotope ratios observed were in the range of -20 to -32 per mil with reference to the Peedee belemnite standard, similar to those previously reported. No systematic trends are obvious to us. Stepwise pyrolysis-gas-chromatography showed only molecules with fewer than 8 carbon atoms at the level of sensitivity of 10(-9) g of organics in a 10 mg rock sample. Carbon, hydrogen, and nitrogen analyses showed noncarbonate carbon from less than 0.1% to more than 3%, with very small amounts of N. The H/C (atomic) ratios on HCl-leached and HF-treated samples were generally less than 0.3. Evidence of low pyrolysis yields (micro-analysis) and low H/C atomic ratios (macro-analysis) implies that the carbonaceous solids in even the least metamorphosed of these ancient sediments have evolved far toward amorphous carbon or graphite and do not yield useful "biochemical fossils."

Journal Article↗

PubMed1976

Fossil microorganisms from the approximately 2800 to 2500 million-year-old Bulawayan stromatolite: Application of ultramicrochemical analyses.

Microfossils, probably representing members of Precambrian photosynthetic communities of bacteria and blue-green algae, have been found in the approximately 2800-2500 million-year-old Bulawayan stromatolites from Rhodesia. Several populations of coccoid and elongate microfossils have been observed in the dark, carbon-rich stromatolite laminae. Some of these elongate forms are morphologically similar to modern bacterial spores. These microfossils were studied in petrographic thin sections and identified by combined scanning electron microscopy-electron microprobe and by analyses of energy dispersive spectra of individual microfossils. The microfossils contain 1-20% organic carbon; some morphotypes contain traces of sulfur and one other, traces of phosphorus. The polymeric nature of the organic carbon was established by analyzing aggregates of microfossils at elevated temperatures in the solid inlet system of an organic mass spectrometer. The coccoid microfossils range in size from 1.2 to 4.3 mum, the elongate microfossils are from 2.4 to 9.8 mum. They are mineralized with dolomite, embedded in a calcite matrix, and are shown to be both indigenous and syngenous with the rock. Identical microfossils also containing organic carbon but mineralized with quartz have been observed in the stromatolites from Belingwe which are part of the Bulawayan Group from Rhodesia. Caution must be used in the interpretation of what these forms are because of their great age and relatively simple morphologies. However, based on morphology and chemical analyses, they represent fossilized bacteria, blue-green algae, or, most likely, both.

Journal Article↗

PubMed1984

Fossil vertebrates from Antigua, Lesser Antilles: Evidence for late Holocene human-caused extinctions in the West Indies.

Vertebrate remains recovered from a limestone fissure filling on Antigua, Lesser Antilles, are associated with radiocarbon dates ranging from 4300 to 2500 yr B.P., contemporaneous with the earliest aboriginal human occupation of the island. Nine taxa of lizards, snakes, birds, bats, and rodents (one-third of the total number of species represented as fossils) are either completely extinct or have never been recorded historically from Antigua. These extinctions came long after any major climatic changes of the Pleistocene and are best attributed to human-caused environmental degradation in the past 3500 yr. Such unnatural influences have probably altered patterns of distribution and species diversity throughout the West Indies, thus rendering unreliable the data traditionally used in ecological and biogeographic studies that consider only the historically known fauna.

Journal Article↗

PubMed1995

Periodic recurrence of methionines: fossil of gene fusion?

As we have recently shown, approximately 20% of proteins are made of uniform size units of approximately 123 aa for eukaryotes and approximately 152 aa for prokaryotes. Such regularity may reflect certain past events in protein evolution by fusion (molecular recombination) of a spectrum of standard-size protein-coding DNA segments--the early genes. Consequently, methionines, as start residues, would mark those locations in proteins that correspond to the DNA recombination sites--the borders between the fused genes. This positional preference of the methionines may still survive as a fossil of the early protein sequence organization. In this study we address the question how methionines are distributed in modern protein sequences. This analysis of eukaryotic sequences shows that methionine residues do preferentially appear at the positions corresponding to the multiples of the unit size, as predicted.

Biological Evolution↗

PubMed1996

Tiggers and DNA transposon fossils in the human genome.

We report several classes of human interspersed repeats that resemble fossils of DNA transposons, elements that move by excision and reintegration in the genome, whereas previously characterized mammalian repeats all appear to have accumulated by retrotransposition, which involves an RNA intermediate. The human genome contains at least 14 families and > 100,000 degenerate copies of short (180-1200 bp) elements that have 14- to 25-bp terminal inverted repeats and are flanked by either 8 bp or TA target site duplications. We describe two ancient 2.5-kb elements with coding capacity, Tigger1 and -2, that closely resemble pogo, a DNA transposon in Drosophila, and probably were responsible for the distribution of some of the short elements. The deduced pogo and Tigger proteins are related to products of five DNA transposons found in fungi and nematodes, and more distantly, to the Tc1 and mariner transposases. They also are very similar to the major mammalian centromere protein CENP-B, suggesting that this may have a transposase origin. We further identified relatively low-copy-number mariner elements in both human and sheep DNA. These belong to two subfamilies previously identified in insect genomes, suggesting lateral transfer between diverse species.

Amino Acid Sequence↗

PubMed2000

Toward a new synthesis: major evolutionary trends in the angiosperm fossil record.

Angiosperm paleobotany has widened its horizons, incorporated new techniques, developed new databases, and accepted new questions that can now focus on the evolution of the group. The fossil record of early flowering plants is now playing an active role in addressing questions of angiosperm phylogeny, angiosperm origins, and angiosperm radiations. Three basic nodes of angiosperm radiations are identified: (i) the closed carpel and showy radially symmetrical flower, (ii) the bilateral flower, and (iii) fleshy fruits and nutritious nuts and seeds. These are all coevolutionary events and spread out through time during angiosperm evolution. The proposal is made that the genetics of the angiosperms pressured the evolution of the group toward reproductive systems that favored outcrossing. This resulted in the strongest selection in the angiosperms being directed toward the flower, fruits, and seeds. That is why these organs often provide the best systematic characters for the group.

Journal Article↗

PubMed2001

Sturgeon orphanin, a molecular "fossil" that bridges the gap between the opioids and orphanin FQ/nociceptin.

The elucidation of the cDNA sequence for sturgeon proorphanin provides a unique window for interpreting the evolutionary history of the opioid/orphanin gene family. The molecular "fossil" status of this precursor can be seen in several ancestral sequence characteristics that point to its origin as a duplication of either a prodynorphin- or proenkephalin-like gene. The sturgeon proorphanin cDNA encodes a precursor protein of 194 residues, and the orphanin heptadecapeptide itself binds not only the opioid receptor-like 1 (ORL1) receptor but also the classical (mu, kappa, and delta) opioid receptors with near equal affinity. Allowing for this broad receptor specificity are several amino acid substitutions at key positions in the heptadecapeptide sequence, relative to its mammalian orthologs, that have been linked by amino acid scans and site-directed mutagenic studies to the exclusion of mammalian orphanin FQ/nociceptin from classic opioid ligands (i.e. F1Y and L14W). The unique receptor binding profile of sturgeon orphanin not only provides insight into the evolutionary history of the opioid and opioid-related peptides but also provides an ideal context in which to investigate the underlying mechanisms by which novel and often divergent physiological functions arise in receptor-ligand systems.

Amino Acid Sequence↗

PubMed2003

Molecules, development and fossils in the study of metazoan evolution; Articulata versus Ecdysozoa revisited.

Two conflicting hypotheses of protostome relationships, Articulata and Ecdysozoa, are reviewed by evaluating the evidence in favor and against each one of them. Understanding early embryonic development and segmentation in non-arthropod non-annelid protostomes seems crucial to the debate. New ways of coding metazoan matrices, avoiding ground-patterns and higher taxa, and incorporating fossil evidence seems the best way to avoid circular debates. Molecular data served as the catalyzer for the Ecdysozoa hypothesis, although morphological support had been implicitly suggested. Most molecular analyses published so far have shown some support for Ecdysozoa, whereas none has ever supported Articulata. Here, new analyses of up to four nuclear loci, including 18S rRNA, myosin heavy chain II, histone H3 and elongation factor 1-alpha are conducted to test the molecular support for Ecdysozoa, and, at least under some parameter sets, most data sets show a clade formed by the molting animals. In contrast, support for Articulata is not found under any analytical conditions.

Journal Article↗

PubMedDate not supplied

An ancient RNase H1 splice junction mutant preserved in a 19-million-year-old genetic fossil in ape genomes.

A retroprocessed pseudogene (retropseudogene) descended from the gene encoding ribonuclease (RNase) H1 has been found in ape genomes that preserves a splice junction mutation event that altered the carboxyl-terminal end of the enzyme. The GT --> GC transition mutant at the 5' splice junction of RNase H1 exon 7/intron 7 led to the absence of exon 8 and more than 1 kb of intron 7 sequence being substituted. Comparison of source gene and pseudogene sequences indicates that the retrotranscription event occurred 19 million years ago. Present in these sequences is an in-frame stop and several available polyadenylation signals, suggesting that the mutant allele could have been translated. At the present time, the genetic fossil is the only evidence that the mutation ever occurred, and thus represents an archival marker of an ancient genetic event in primate evolution.

Animals↗

PubMed1995

Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.

Short interspersed elements (SINEs) are ubiquitous in mammalian genomes. Remarkable variety of these repeats among placental orders indicates that most of them amplified in each lineage independently, following mammalian radiation. Here, we present an ancient family of repeats, whose sequence divergence and common occurrence among placental mammals, marsupials and monotremes indicate their amplification during the Mesozoic era. They are called MIRs for abundant Mammalian-wide Interspersed Repeats. With approximately 120,000 copies still detectable in the human genome (0.2-0.3% DNA), MIRs represent a 'fossilized' record of a major genetic event preceding the radiation of placental orders.

Animals↗

PubMed1965

Electron microscopy of fossil bacteria two billion years old.

Occurrence of well-preserved rod-shaped and coccoid bacteria in the Precambrian Gunflint chert (1.9 x 10(9) years old) has been demonstrated by electron microscopy. This appears to be the oldest definite occurrence of bacteria in the fossil record. The organisms are morphologically comparable with certain modern iron bacteria.

Bacteria↗

PubMed1968

Ten-armed fossil cephalopod from the Pennsylvanian of Illinois.

Jeletzkya douglassae Johnson and Richardson is described as the oldest known representative of an extant squid group. The species is known from a single specimen from the Middle Pennsylvanian of Illinois. This very unusual fossil consists of the complete tentacular crown and a fragile shell. The arms bear hooks in double rows.

Animals↗

PubMed1968

Oxygen-isotope ratios in phosphate from fossil marine organisms.

Well-preserved fossil marine organisms generally yield very positive delta(18)(PO(4)(3-)) values which are considered to result from relatively good preservation of the original oxygen-isotope composition of phosphatic material deposited under isotopic equilibrium conditions in oceanic water whose O(18):O(16) ratio was more positive than that of modern oceans.

Animals↗