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Raman spectroscopy of oxidized and reduced nicotinamide adenine dinucleotides.

We have measured the Raman spectra of oxidized nicotinamide adenine dinucleotide, NAD+, and its reduced form, NADH, as well as a series of fragments and analogues of NAD+ and NADH. In addition, we have studied the effects of pH as well as deuteration of the exchangeable protons on the Raman spectra of these molecules. In comparing the positions and intensities of the peaks in the fragment and analogue spectra with those of NADH and NAD+, we find that it is useful to consider these large molecules as consisting of component parts, namely, adenine, two ribose groups, two phosphate groups, and nicotinamide, for the purpose of assigning their spectral features. The Raman bands of NADH and NAD+ are found generally to arise from molecular motions in one or another of these molecular moieties, although some peaks are not quite so easily identified in this way. This type of assignment is the first step in a detailed understanding of the Raman spectra of NAD+ and NADH. This is needed to understand the binding properties of NADH and NAD+ acting as coenzymes with the NAD-linked dehydrogenases as deduced recently by using Raman spectroscopy.

Molecular Conformation↗

Surface enhanced Raman scattering effects of silver colloids with different shapes.

By solution-based method, three kinds of silver colloids, self-assembled nanowires, triangular nanoplates and quasispherical nanoparticles, have been synthesized. TEM studies revealed that they exposed different crystal planes, such as {111} crystal planes to triangular nanoplates, mainly {100} and {111} planes to self-assembly nanowires. Hereby, do the distinct shapes and crystal planes have an impact on the surface enhanced Raman scattering (SERS)? The great differences of the SERS spectra of rhodamine B at these Ag colloids confirmed that the shapes and crystal planes of silver have great effect on Raman enhancement, especially the crystal planes.

Colloids↗

Nanophotonic crescent moon structures with sharp edge for ultrasensitive biomolecular detection by local electromagnetic field enhancement effect.

We present novel gold nanophotonic crescent moon structures with a sub-10 nm sharp edge, which can enhance local electromagnetic field at the edge area. The formation of unconventional nanophotonic crescent moon structure is accomplished by using a sacrificial nanosphere template and conventional thin film deposition method, which allows an effective batch nanofabrication and precise controls of nanostructure shapes. Unique multiple scattering peaks are observed in a single gold nanocrescent moon with dark-field white light illumination. A 785 nm near-infrared (NIR) diode laser was used as the excitation source to induce the amplified scattering field on the sharp edge of the single gold nanocrescent moon. The Raman scattering spectrum of Rhodamine 6G molecules adsorbed on the single gold nanocrescent moon are characterized, and the Raman enhancement factor of single gold nanocrescent moon is estimated larger than 10(10), which suggests the potential applications of gold nanocrescent moons in ultrasensitive biomolecular detection and cellular imaging using surface enhanced Raman spectroscopy.

Electromagnetic Fields↗

Polarization-dependent effects in surface-enhanced Raman scattering (SERS).

A few key examples of polarization effects in surface-enhanced Raman scattering (SERS) are highlighted and discussed. It is argued that the polarization of the local field, which is felt by an analyte molecule in a location of high electromagnetic field enhancement (hot-spot), can be very different from that of the incident exciting beam. The polarization dependence of the SERS signal is, therefore, mostly dictated by the coupling of the laser to the plasmons rather than by the symmetry of the Raman tensor of the analyte. This sets serious restrictions for the interpretation of both single-molecule SERS polarization studies and for the use of circularly polarized light in techniques like surface-enhanced Raman optical activity.

Artifacts↗

First direct synthesis of highly ordered bifunctionalized mesoporous silica thin films.

Optically transparent and highly ordered mesoporous organosilica thin films functionalized with two different organic groups in various proportions were synthesized by templated-directed cocondensation of tetraethylorthosilicate (TEOS) and a mixture of two distinct and functional organotriethoxysilanes [NC(CH2)3Si(OEt)3 and O=P(OEt)2(CH2)3Si(OEt)3]. The mesostructured films obtained by evaporation induced self-assembly (EISA) approach were deposited on glass or silicon substrates by dip-coating. They were characterized by Grazing Incidence Small Angle X-ray Scattering (GISAXS) and X-ray reflectivity. We showed that whatever the proportion in organic groups, only 2D hexagonal phase having p6m symmetry was observed for all the materials indicating a good compatibility between the organic groups. The bi-functionalization of the internal pores surface by the organotriethoxysilanes groups was clearly evidenced by using micro-Raman spectroscopy.

Magnetic Resonance Spectroscopy↗

[Raman spectra of the serums from cancerous persons].

The serums of different categories, those who are normal people and those who are patient suffering from nasopharyngeal cancer, liver cancer and chronic leukaemia, were determined by laser Raman spectra at the range of 0-2,000 cm-1. The results demonstrated that the serums of those who are suffering from the same disease show different characteristic peak height, but their Raman spectrogram characteristics are almost the same. There exists great difference in the laser Raman spectrogram for the serums of the different kinds of cancerous patients. Near the characteristic peaks of laser Raman spectrograms of serums from the cancerous patients, the normal person's serum has no Raman spectrogram characteristic peak.

Humans↗

[Study of Raman-PL spectra for GaAs layer on Si substrate in hot wall epitaxy].

The quality of GaAs layer on the Si substrate under different growth conditions with HWE technology was studied by Raman and PL spectra. The results show that the ratio of peak value to area for the TO peak at 265 cm-1 increased gradually with the improvement of the GaAs crystallinity quality for the GaAs layer at 300 K. The FWHM of Raman spectra of TO peak at 265 cm-1 is narrow, and the Raman shift is 2 cm-1. In the PL spectra, the FWHM at 900 nm is narrow. Then the results show GaAs layer is highly structural quality. But if we can not measure the PL peak at 900 nm, or the FWHM of Raman spectra of TO peak at 265 cm-1 is not narrow, the GaAs layer is not crystallinity. Therefore, we can estimate the layer quality by Raman and PL spectra.

Arsenicals↗

Vibrational frequencies and structural determination of hafnium tetrahydroborate.

The normal mode frequencies and corresponding vibrational assignments of of hafnium tetrahydroborate in T symmetry are examined theoretically using the Gaussian 98 set of quantum chemistry codes. All normal modes were successfully assigned to one of to one of six types of motion (B-H stretch, Hf-B stretch, B-Hf-B bend, H-B-H bend, BH4 wag, and BH4 twist) predicted by a group theoretical analysis. By comparing the vibrational frequencies with IR and Raman spectra available in the literature, a set of scaling factors is derived. Theoretical IR and Raman intensities are reported. Quantum chemical calculations predict that the molecule does not possess strict Td symmetry. The Td structure possesses one negative eigenvalue. The minimum energy structure possesses T symmetry.

Borates↗

Detection and quantification of calcium fluoride using micro-Raman spectroscopy.

Investigations on the caries-preventive effect of calcium fluoride have been seriously hampered by the lack of adequate detection techniques. In this paper, the micro-Raman technique is introduced as a suitable method for CaF2 quantification with a spot size typically 5 microns. Advantages of this measuring technique and associated problems are described for CaF2 determination in the presence of large amounts of hydroxyapatite. The data show that a comparative analysis of Raman intensities of calcium fluoride and phosphate ions of hydroxyapatite can be used for quantification of CaF2 concentrations. The intensity behaviour of the CaF2 and hydroxyapatite Raman lines is explained considering the absorption-scattering cross-sections of the two components. The ratio of the Raman intensity (322 cm-1) of CaF2 to the phosphate Raman intensity (432/447 cm-1) of hydroxyapatite was found to be related linearly to the ratio of the concentration of CaF2 to that of hydroxyapatite. At present, the lower limit of CaF2 quantification is approximately 3 wt%. The technique has already been applied on fluoridated bovine enamel, and Raman emissions due to CaF2 or CaF2-like material formed on/in enamel have been detected for the first time.

Animals↗

Conformational stability and vibrations of aminopropylsilanol molecule.

Density functional theory (DFT), using the B3-LYP/6-31G(d,p) method have been used to investigate the conformation and vibrational spectra of aminopropylsilanetriol (APST) NH2CH2CH2CH2Si(OH)3. The potential function for CCCSi torsion gives rise to two distinct conformers trans and gauche. The predicted energy of the more stable trans conformer is 337 cm-1 less than the energy of gauche conformer. The calculated barriers to the conformation interchange are: 1095, 2845 and 438 cm-1 for the trans to gauche, gauche to gauche and gauche to trans conformers, respectively. For the trans conformer the potential energy curve for the Si(OH)3 groups torsion in APST has been calculated changing the HOSiC dihedral angle. The barrier for the internal rotation of 3065 cm-1 has been obtained. The optimized molecular structure of APST dimer calculated for trans conformer has a SiOSi angle of 143.2 degrees, and a SiOSi bond length of 0.164 nm. A complete vibrational assignment for both conformers as well as for trans-dimer is supported by the normal coordinate analysis, calculated IR intensities as well as Raman activities. On the basis of the results, the vibrational spectra of APST aqueous solution and APST polymer have been analyzed. The average error between the observed and calculated frequencies is 14 cm-1.

Dimerization↗

Studies on stress-induced changes at the subcellular level by Raman microspectroscopic mapping.

Raman microspectroscopic mapping enables one to study the chemical composition and molecular structure of subcellular components in individual cells without the need for labeling. Lung fibroblast cells were prepared under normal conditions and under stress, which was induced by 24 h of exposure to glyoxal. Raman microspectroscopic maps were recorded from fixed cells with 785-nm excitation and with 1-microm step width. Cluster analysis was applied to generate pseudocolor images of the cell morphology. Raman maps revealed that the cell nucleus shrinks in stressed cells, called pyknosis, which refers to an early stage of apoptosis. The intensity of nucleic acid bands decreased in cluster-averaged Raman spectra of the nucleus and cytoplasm, which is consistent with degradation and conformational changes of DNA and RNA. During a later stage of apoptosis, Raman maps indicate a rounding of cells, a further intensity decrease of nucleic acids bands, fragmentation of the nucleus, disappearance of lipid bodies, and formation of blisters at the cell surface. Whereas the peripheral membrane of the undisturbed cell is composed of lipids and cholesterol, the blisters have a higher protein content with nucleic acids incorporated. The results demonstrate that Raman spectroscopic mapping might become a powerful tool in cell biology for single cell analysis.

Cells, Cultured↗

Characterisation of uterine sarcoma cell lines exhibiting MDR phenotype by vibrational spectroscopy.

Multidrug resistance (MDR) enables cancer cells to escape cytotoxic insults of anticancer drugs. Rapid identification of cells exhibiting the MDR phenotype is very important since it can lead to an effective and individual patient based treatment plan. We have investigated a combined vibrational spectroscopic approach, using both micro-Raman and FTIR techniques, in order to characterise a sensitive human uterine sarcoma cell line MES-SA and its multidrug-resistant derivative Garf. In this study, these two complementary methods have been evaluated via the use of principal components analysis (PCA), for discrimination of cells exhibiting the MDR phenotype. Our results indicate that, though they inherently have different sensitivities, both Raman and IR methods can provide a good differentiation of cell phenotypes.

Cell Line, Tumor↗

Lewis acid-base adducts: a quantitative Raman analysis of formamide and dimethylsulfoxide mixtures.

Raman spectra of pure liquid dimethylsulfoxide (DMSO) and of binary mixtures of formamide (FA) and DMSO in different compositions were obtained. The vibrations involving the SO functional group in the band envelope at ca. 1050 cm(-1) of pure liquid DMSO are assigned to monomers, dimers and higher aggregates of DMSO. The appearance of a new band at 1024 cm(-1), whose intensity shows large dependence on the FA concentration, is assigned to a FA-DMSO adduct. This has been possible due to the two H-bond donor sites of FA and the strong donor character of DMSO that become the environment propitious for the donor-acceptor reaction. Quantitative analysis performed in the SO stretching region in the binary mixtures gives a 1:1 stoichiometry in this adduct in the limit of infinite dilution. This proportion is in full agreement with our previous determination for the FA-ACN adduct. The experimental evidence of the 1:1 FA-DMSO adduct is presented for the first time using Raman spectroscopy. The results described here open new possibilities to study the acid-base reactions nature of FA adducts.

Acids↗

Analysis of breast implant capsular tissue for crystalline silica and other refractile phases.

This study questions previous reports of the presence of micrometer-sized areas of crystalline silica in pathologic tissue sections that are based exclusively on polarized-light microscopy. By using optical principles, it can be argued that it is impossible to identify unambiguously or to detect the birefringence of crystalline silica in 5-microm-thin sections. To clarify whether silicone, amorphous silica, or crystalline silica occurs in micrometer-sized moieties in standard 5-microm-thick tissue sections, one needs to apply a structural means of analysis in addition to optical microscopy. This study recommends the use of the laser Raman spectroscopic technique, which is very well suited to clarify this highly controversial issue in future pathologic studies.

Breast↗

Raman spectroscopy for diagnosis of atherosclerosis: a rapid analysis using neural networks.

Near-infrared Raman spectroscopy (NIRS) is one of the novel techniques that has a potential for in vivo diagnosis of atherosclerosis in human arteries. For such real time clinical applications, a rapid collection and analysis of the data is needed. One of the major problems with the fast data collection is that the noise generated by the detector has the same level as the Raman signal from the tissue, which makes the analysis difficult. In this work, NIRS measurements have been carried out on a total of 60 samples from human coronary arteries. Raman spectral data with the correlated histopathological analysis have been used as a basis to stimulate the cases of severe noise conditions. The main objective of this paper is the comparison of different processing algorithms that have been developed based on either wavelet transformation or principal component analysis for compressing the Raman spectral vectors and a rapid data classification based on different neural network architectures. The developed algorithms found to provide promising diagnosis results with classification errors smaller than 5%, even in the cases of Raman data with collection times as small as 20 ms. It has been concluded that the developed algorithms would be very much useful in the development of Raman spectroscopy systems for in vivo biological applications.

Algorithms↗

Raman spectral analysis of phenoxyacetic acid and some chloro substituted phenoxyacetic acids.

Raman spectra of phenoxyacetic acid and chlorine substituted phenoxyacetic acids viz., o-chlorophenoxyacetic acid, p-chlorophenoxyacetic acid and 2,6-dichlorophenoxyacetic acid have been analysed with the aid of abinitio theoretical calculations. The effect of chlorine substituents on the Raman spectra of phenoxyacetic acid have also been analysed by considering some important vibrational modes.

2,4-Dichlorophenoxyacetic Acid↗

Vibrational analysis of 1,4-diaminoanthraquinone and 1,5-dichloroanthraquinone. A joint FTIR, FT-Raman and scaled quantum mechanical study.

This work deals with the vibrational spectroscopy of 1,4-diaminoanthraquinone (1,4-DAAQ) and 1,5-dichloroanthraquinone (1,5-DCAQ). The mid and far FTIR and FT-Raman spectra were measured in the condensed state. The fundamental vibrational frequencies and intensity of the vibrational bands were evaluated using density functional theory (DFT) with the B3LYP functional and 6-31G* basis set. The vibrational spectra were interpreted with the aid of normal coordinate analysis based on a scaled quantum mechanical force field. The infrared and Raman spectra were also predicted from the calculated intensities. Unambiguous vibrational assignment of all the fundamentals were made using the potential energy distribution (PED).

Anthraquinones↗