SEARCH · PubMed Health

Results for “spatial dependency”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 523 records · Page 29Linked to original sources

PubMed2002

Loss of medial septal modulation of dentate gyrus physiology in young mice overexpressing human beta-amyloid precursor protein.

Mice overexpressing the human mutant beta-amyloid precursor protein (hbetaAPP; PDAPP mice) show deficits in hippocampal-dependent spatial learning and hippocampal short- and long-term plasticity at ages preceding Abeta plaque deposition. We determined whether young PDAPP mice also exhibit alterations in septohippocampal function in vivo, which plays an important role in cognitive function. Electrical stimulation of the medial septum significantly increased neuronal excitability and reduced paired-pulse facilitation in the dentate gyrus. Medial septal-induced facilitation of dentate neuronal excitability was reduced in PDAPP mice. The inhibitory effects of medial septum stimulation on dentate paired-pulse facilitation were also attenuated in PDAPP mice. Young mice overexpressing hbetaAPP exhibit early abnormalities in neural circuits implicated in cognitive function that may play an important role in the more profound deficits observed in aged PDAPP mice.

Age Factors↗

PubMed2003

Partial reversal of the effect of maternal care on cognitive function through environmental enrichment.

Maternal care influences hippocampal development in the rat. The offspring of mothers that exhibit increased levels of pup licking/grooming and arched-back nursing (High LG-ABN mothers) show increased hippocampal N-methyl-D-aspartate (NMDA) receptor binding and enhanced hippocampal-dependent spatial learning. In these studies we examined whether environmental enrichment from days 22-70 of life might reverse the effects of low maternal care. Environmental enrichment eliminated the differences between the offspring of High and Low LG-ABN mothers in both Morris water maze learning and object recognition. However, enrichment did not reverse the effect of maternal care on long-term potentiation in the dentate gyrus or on hippocampal NMDA receptor binding. In contrast, peripubertal enrichment did reverse the effects of maternal care on hippocampal alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor binding. These findings provide evidence for the reversal of the effects of reduced maternal investment in early life on cognitive function in adulthood. Such effects might involve compensatory changes associated with peripubertal enrichment.

Animals↗

PubMedDate not supplied

Effects of aging on the hippocampal formation in a naturally occurring animal model of mild cognitive impairment.

Vertical integration is being used to great advantage in neurobiological research on the basis of age-related cognitive decline. Such research bridges analysis between the molecular and cellular levels and the outcome of impaired psychological functions. Current use of animals models within this paradigm has defined mild cognitive impairment in a subpopulation of outbred aged Long-Evans rats by assessment of hippocampal-dependent spatial cognition. Aged rats with cognitive impairment exhibited no loss of neurons in the hippocampus. Current research is focused on the functional alterations in neurons by methods which assess transcriptional mechanisms and signaling pathways.

Aging↗

PubMed2000

Finite size disc gradient coil set for open vertical field magnets.

A new analytical approach is used in the design of disc-like gradient coils suitable for magnet geometries with main field direction perpendicular to the surface of the disc. An inverse procedure is used to optimize the coil's characteristics, subject to the restrictions imposed by the desired field behavior over a certain set of constraint points inside a predetermined imaging volume. Excellent agreement between the expected values of the gradient magnetic field and the numerical values generated by applying the Biot-Savart law to a discrete current pattern of the perspective disc coil was found. A Finite Element Analysis package was used to predict the fringe gradient field levels for a non-shielded axial disc coil and for a self-shielded transverse disc coil in the vicinity of the magnet poles. The numerical results indicate that for the self-shielded design the gradient fringe field is 1000 times smaller than the corresponding fringe field for the non-shielded disc case. Also no significant spatial dependence was noticed for the shielded coil's fringe field.

Algorithms↗

PubMed1996

A technique for single-channel MR brain tissue segmentation: application to a pediatric sample.

A segmentation method is presented for gray matter, white matter, and cerebrospinal fluid (CSF) in thin-sliced single-channel brain magnetic resonance (MR) scans. The method is based on probabilistic modeling of intensity distributions and on a region growing technique. Interrater and intrarater reliabilities for the method were high, and comparison with phantom studies and hand-traced results from an experienced rater indicated good validity. The method was designed to account for spatially dependent image intensity inhomogeneities. Segmentation of MR brain scans of 105 (56 male and 49 female) healthy children and adolescents showed that although the total brain volume was stable over age 4-18, white matter increased and gray matter decreased significantly. There were no sex differences in total gray and white matter growth after correction for total brain volume. White matter volume increased the most in superior and posterior regions and laterality effects were seen in hemisphere tissue volumes. These findings are consistent with other reports, and further validate the segmentation technique.

Adolescent↗

PubMed1999

Mapping eddy current induced fields for the correction of diffusion-weighted echo planar images.

Diffusion-weighted echo-planar magnetic resonance imaging is potentially of great importance as a diagnostic imaging tool; however, the technique currently suffers a number of limitations, including the image distortion caused by the eddy current induced fields when the diffusion-weighting magnetic field gradient pulses are applied. The distortions cause mis-registration between images with different diffusion-weighting, that then results in artifacts in quantitative diffusion images. A method is presented to measure the magnetic fields generated from the eddy currents for each of three orthogonal gradient pulse vectors, and then to use these to ascertain the image distortion that occurs in subsequent diffusion-weighted images with arbitrary gradient pulse vector amplitude and direction, and image plane orientation. The image distortion can then be reversed. Both temporal and spatial dependence of the residual eddy current induced fields are included in the analysis. Image distortion was substantially reduced by the correction scheme, for arbitrary slice position and angulation. This method of correction is unaffected by the changes in image contrast that occur due to diffusion weighting, and does not need any additional scanning time during the patient scan. It is particularly suitable for use with single-shot echo planar imaging.

Anisotropy↗

PubMed2003

Long-term functional consequences of transient occlusion of the middle cerebral artery in rats: a 1-year follow-up of the development of epileptogenesis and memory impairment in relation to sensorimotor deficits.

Post-stroke seizures occur in 5-20% of patients. Modeling of stroke-induced seizures in animals provides a useful tool for investigating the molecular basis of epileptogenesis and for developing therapies for stroke patients at increased risk for epileptogenesis. The questions addressed in the study were: (1) Do rats develop spontaneous seizures after transient occlusion of the middle cerebral artery (MCAO)? (2) Is epileptogenesis associated with impaired hippocampus-dependent spatial learning and memory? (3) Are the functional abnormalities linked to axonal plasticity in the dentate gyrus? (4) Does the sensorimotor impairment induced by MCAO predict the risk of epileptogenesis? Adult male Sprague-Dawley rats were subjected to MCAO for 120 min. Development of spontaneous seizures was monitored by 1 week of continuous video-electroencephalographic (EEG) recordings at 3, 7, and 12 months after MCAO. Spontaneous seizures were not detected during 1-year follow-up in ischemic rats. Animals were, however, impaired in the spatial memory task (P<0.001), which was not associated with altered hippocampal LTP or abnormal mossy fiber sprouting (Timm staining). Animals also had a long-lasting sensorimotor deficit (P<0.05). The present study indicates that MCAO causes long-lasting sensorimotor and spatial memory impairment, but does not induce epileptogenesis or spontaneous seizures.

Animals↗

PubMed2002

Cortical hypoactivation during resting EEG in schizophrenics but not in depressives and schizotypal subjects as revealed by low resolution electromagnetic tomography (LORETA).

This study was performed in order to address the question whether the newly introduced technique of low-resolution electromagnetic tomography (LORETA) is able to detect hypofrontality in schizophrenic patients. We investigated resting EEGs of 19 unmedicated schizophrenics and 20 normal subjects. For comparison, we also investigated 19 subjects with schizotypal personality and 30 unmedicated depressive patients. A significant increase of delta activity was found in schizophrenic patients over the whole cortex, most strongly in the anterior cingulate gyrus and temporal lobe (fusiform gyrus). Both schizotypal subjects and depressive subjects showed significantly less delta, theta and beta activity in the anterior cingulum, a decrease of alpha1 activity in the right temporal lobe and a decrease of alpha2 activity in the left temporal lobe. The results suggest general cortical hypoactivation, most pronounced in the anterior cingulate and temporal lobe in schizophrenics, whereas there is evidence for a complex, frequency-dependent spatial pattern of hyperactivation in schizotypal subjects and depressive patients. The results are discussed within a neurophysiological and methodological framework.

Adult↗

PubMedDate not supplied

Mesoscopic neurodynamics: from neuron to brain.

Intelligent behavior is characterized by flexible and creative pursuit of endogenously defined goals. Intentionality is a key concept by which to link neuron and brain to goal-directed behavior through brain dynamics. An archetypal form of intentional behavior is an act of observation in space-time, by which information is sought for the guidance of future action to explore unpredictable and ever-changing environments. These acts are based in the brain dynamics that creates spatiotemporal patterns of neural activity, serving as images of goals, of command sequences by which to act to reach goals, and of expected changes in sensory input resulting from intended actions. Prediction of the sensory consequences of intended action and evaluation of performance is by reafference. An intentional act is completed upon modification of the system by itself through learning. These principles are well known among psychologists and philosophers. What is new is the development of nonlinear mesoscopic brain dynamics, by which the theory of chaos can be used to understand and simulate the constructions of meaningful patterns of neural activity that implement the process of observation. The design of neurobiological experiments, analysis of the resulting data, and synthesis of explanatory models require an understanding of the hierarchical nature of brain organization, here conceived as single neurons and neural networks at the microscopic level; clinically defined cortical and subcortical systems studied by brain imaging (for example, fMRI) at the macroscopic level, and self-organizing neural populations at an intermediate mesoscopic level, at which synaptic interactions create novel activity patterns through nonlinear state transitions. The constructive neurodynamics of sensory cortices, when they are engaged in pattern recognition, is revealed by learning-dependent spatial patterns of amplitude modulation and by newly discovered radially symmetric spatial gradients of the phase of aperiodic carrier waves in multichannel subdural EEG recordings.

Animals↗

PubMed2000

Bacterial sporulation: pole-to-pole protein oscillation.

Sporulating bacteria need to temporally coordinate DNA replication, chromosome partitioning and sporulation initiation. Recent work has shown that one aspect of this coordination lies with the interdependent subcellular localization of two proteins, Spo0J and Soj, and in the Spo0J-dependent spatial oscillation of Soj.

Bacillus subtilis↗

PubMed2001

A probabilistic description of radioactive contamination: a multivariate model.

A multivariate discrete probability model is used to facilitate the description of gamma-ray spectroscopic data obtained from radioactively contaminated territory, east of the former Semipalatinsk nuclear test site in Kazakhstan. Two possible estimators of probabilities of interest have been considered: maximum likelihood and unbiased estimators. We show that unbiased estimators are much easier to compute. The model was used in two variants: (i) several radionuclides in spatially independent measurements, (ii) a single radionuclide in spatially dependent measurements. We show that, in both cases, it is important to take into account the correlation for the accurate evaluation of probabilities of interest.

Gamma Rays↗

PubMed2000

Energy behaviour of neutrons generated by Witch-type distributed axi-symmetrical deuteron beams accelerated onto plane tritium targets

This paper is an analytical study of the spatial dependency of the d-T neutron energy in the vicinity of a homogeneous tritium-occluded plane target. Close to the target, and along the path of incidence of axially symmetric deuteron beams, the transverse density of accelerated deuterons is assumed to be governed by a law approximated by the 'Witch' function. In particular circumstances, the elementary neutron emission process in non-dispersive media can be considered to be omni-directional (due consideration being paid to collision kinetics, depending upon mass and kinetic energy of particles involved in the nuclear collision, nuclear reaction energy, etc.). Consequently, analytical expressions can be considerably simplified. By applying the classical kinetic energy and momentum conservation laws to nuclear processes, a theoretical description is obtained, taking into account the exoergic character of d-T fusion reaction. A number of expressions for energetic prediction of the fast neutron field are proposed. The associated relations, involving elementary functions, can be investigated using a desk-top computer. Computationally tractable tools are of importance in the study of diverse situations such as induced reactions and activation analysis using 14 MeV neutron generators, investigations in health-physics, radiation dose measurements, nuclear medicine, damage effects, and simulation studies.

Journal Article↗

PubMedDate not supplied

An investigation of the estimation of ejection fractions and cardiac volumes by a quantitative gated SPECT software package in simulated gated SPECT images.

BACKGROUND: The purpose of this investigation was to determine the accuracy of the estimation of ejection fractions (EFs) and left ventricular volumes from a commercially available software package (Quantitative Gated SPECT [QGS]) as a function of different true EFs, count level in the acquisitions, severity and location of perfusion defects, increasing hepatic activity, and modified wall motion. METHODS AND RESULTS: The dynamic mathematic cardiac-torso digital phantom was used to create three-dimensional source and attenuation maps representing the distribution of a technetium-99m-labeled cardiac perfusion agent in the chest. Three hearts with varying end-systolic volumes were used to investigate different EFs. Perfusion defects were created as localized uptake within selected portions of the cardiac walls, scaled to the desired fraction of the normal wall uptake, and subtracted from the normal distribution. The hepatic uptake was increased up to five times of the normal heart uptake to investigate the influence of a "hot" liver. Alteration of lateral wall motion was also investigated. A three-dimensional projector that included the influence of distance-dependent spatial resolution and nonuniform attenuation was then used to create projection images. The projections were scaled to the desired acquisition count level, and Poisson noise was added. Automatic determination of EF slightly overestimated the true EF for normal count levels by 3% to 7% of the true EF and underestimated the true EF by up to 9% for very low count levels for 180-degree reconstructions. The accuracy for determining the volumes was not as high as for the EFs (an average error of 12% was observed). The calculated EFs were relatively accurate for perfusion defects of 50% or less. When perfusion defects exceeded 50%, extracardiac counts were included in the heart contours, causing larger underestimations of EF. With removal of the extracardiac counts, the EFs increased. With a hepatic uptake of two or more times the heart uptake, no meaningful EF could be obtained. Either drawing a single region of interest for every slice or use of the manual mode with constrain option could remarkably improve the estimation. The accuracy of the calculation of EF and volumes for the heart with stationary wall was fairly high but decreased significantly when coupled with perfusion defects. CONCLUSION: It is concluded that the QGS program evaluates the functional parameter of EF accurately. The biggest limitations occurred in determining the appropriate cardiac contour if areas with very high extracardiac counts were present in the heart slices, and when a greater than 50% decrease occurred in uptake for perfusion defects.

Cardiac Volume↗

PubMed2003

Estrogen treatment alleviates NMDA-antagonist induced hippocampal LTP blockade and cognitive deficits in ovariectomized mice.

Estrogen is implicated in hippocampus-dependent spatial learning as well as structural organization and electrophysiological properties of the rat hippocampus but little is known about its mechanisms of action in mice. In this study, we investigated pharmacologically whether estrogen interacts with the hippocampal N-methyl-D-aspartate (NMDA) receptors in ovariectomized mice as postulated for rats. Female C57BL/6J mice were ovariectomized at 5 months, and 2 weeks before testing at 12 months, half of them received subcutaneous estrogen pellets containing 0.18 mg of 17 beta-estradiol. The competitive NMDA-antagonist, 3-((+/-)-2-carboxypiperazin-4-yl)-propyl-1-phosphonic acid (CPP), was administered at 5.0 and 10.0 microM to block induction of long-term potentiation (LTP) in the hippocampal slice and intraperitoneally at 0.5, 2.0, and 5.0 mg/kg to impair spatial learning in the water maze. Estrogen treatment shifted the dose-response curve to CPP in both experiments. First, 10 microM CPP blocked the initiation of LTP in all mice, but 5 microM only in ovariectomized non-estrogen-treated mice. Second, final level of acquisition and probe trial performance in the water maze were less affected by high doses of CPP in the estrogen-treated ovariectomized mice than in non-treated group. In control tests for motor side effects, estrogen treatment did not reduce the tendency of CPP to decrease locomotor activity in the open field and impair balance on a rotating rod, and estrogen by itself decreased swimming speed as did CPP, but these effects did not interact. Our findings support the notion that estrogen treatment increases the number of active NMDA-receptors in the mouse hippocampus.

Animals↗

PubMed2003

A multi-scale probabilistic network model for detection, synthesis and compression in mammographic image analysis.

We develop a probabilistic network model over image spaces and demonstrate its broad utility in mammographic image analysis, particularly with respect to computer-aided diagnosis. The model employs a multi-scale pyramid decomposition to factor images across scale and a network of tree-structured hidden variables to capture long-range spatial dependencies. This factoring makes the computation of the density functions local and tractable. The result is a hierarchical mixture of conditional probabilities, similar to a hidden Markov model on a tree. The model parameters are found with maximum likelihood estimation using the expectation-maximization algorithm. The utility of the model is demonstrated for three applications: (1) detection of mammographic masses for computer-aided diagnosis; (2) qualitative assessment of model structure through mammographic synthesis; and (3) compression of mammographic regions of interest.

Female↗

PubMedDate not supplied

Modeling cat retinal beta-cell arrays.

There were three objectives to the work undertaken for this paper: (1) to provide a comprehensive characterization of the statistical properties of arrays of beta-cell somata; (2) to develop a model that simulates cellular arrays with the same properties; and (3) to use this model to examine whether the array of beta-cells should be viewed as one array or as two arrays, one each for its OFF- and ON-center cells. Beta-cells are morphological correlates of the electrophysiological X-cells and those beta-cells whose dendrites stratify within the outer and inner sublamina of the retina's inner plexiform layer correspond, respectively, to OFF- and ON-center X-cells. Arrays of peripheral beta-cell somata from two retinas were studied. A Delaunay triangulation and a Voronoi tessellation were generated for each array and measures derived from these constructs used to analyze the arrays' spatial organization. As others have shown previously with a less complete statistical characterization, we found that the arrays of OFF- and ON-center beta-cells have similar spatial properties and are more regular than the array of all beta-cells. We developed a model to simulate cellular arrays with spatial properties like those of arrays of beta-cells. A good fit between model and real arrays was found when the model assumed an explicit spatial dependence between the placement of OFF- and ON-center cells. We propose therefore that a single array of beta-cells formed of both OFF- and ON-center cells is consistent with the data currently available for beta-cell somatic arrays.

Animals↗

PubMedDate not supplied

Foveal and extra-foveal influences on rod hue biases.

Green, blue and short-wavelength-red rod hue biases are strongest and most reliable with large, dimly-mesopic, extra-foveal stimuli but tend to diminish when stimuli are confined to a small area of the central fovea. This study explores how the stimulation of foveal and extra-foveal areas interact in determining rod hue biases, and whether large stimuli are as effective for revealing rod hue biases when foveally centered as when eccentrically centered. We assessed rod influence by measuring wavelengths of unique green and unique yellow (with 1-s duration, 1 log scot td stimuli and a staircase procedure) under bleached and dark-adapted conditions. We measured unique hues with foveally centered 2 degrees - and 7.4 degrees -diameter disks, a 7.4 degrees (outer) x 2 degrees (inner) diameter annulus, and a 7 degrees -eccentric, 7.4 degrees -diameter disk. The rod green bias (shift of unique yellow locus) was typically <10 nm and remained fairly constant across spatial configurations, indicating no special foveal influence. The rod blue bias (shift of unique green) varied more among observers and spatial configurations, reaching up to 47 nm. However, stimuli covering the fovea typically produced no rod blue bias. Thus, the present results add differences in spatial dependence (i.e., foveal/extra-foveal interaction) between green and blue rod biases to previously demonstrated differences (e.g., differences in amount of light level dependence, in time course and in the spectral range influenced by each bias).

Bias↗

PubMed2001

Chromium diffusion and reduction in soil aggregates.

The distribution of metal contaminants such as chromium in soils can be strongly localized by transport limitations and redox gradients within soil aggregates. Measurements of Cr(VI) diffusion and reduction to Cr(III) were obtained in soil columns representing transects into soil aggregates in order to quantify influences of organic carbon (OC) and redox potentials on Cr transport distances and microbial community composition. Shifts in characteristic redox potentials, and the extent of Cr(VI) reduction to Cr(III) were related to OC availability. Depth profiles of Cr(VI, III) obtained with micro X-ray absorption near edge structure (micro-XANES) spectroscopy reflected interdependent effects of diffusion and spatially dependent redox potentials on reduction kinetics and microbial community composition. Shallow diffusion depths (2-10 mm) and very sharply terminated diffusion fronts in columns amended with OC (80 and 800 ppm) reflected rapid increases in Cr reduction kinetics over very short (mm) distances. These results suggest that Cr contamination in soils can be restricted to the outsides of soil aggregates due to localized transport and rapid reduction and that bulk sample characterization is inadequate for understanding the controlling biogeochemical processes.

Chromium↗