PubMed Health⌕ Search

SEARCH · PubMed Health

Results for “electronic structure”

Explore indexed PubMed citations for clinical trials, systematic reviews and public health research. Read source abstracts and follow each citation to its original PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 55 records · Page 3Linked to original sources
PubMed1999

Stereospecificity in Reactions of Allylstannanes with Aldehydes Explored by Electronic Structure Calculations.

Electronic structure calculations at the 6-31G/B3LYP level have been used to identify stationary structures on the potential energy surfaces for reactions of 1-alkoxy- and 1-alkyl-alk-2-enylstannanes with aldehydes. The role of substituents at both the 1-position and at the tin center in determining the stereochemistry of the products and the size of the barriers to reaction have been explored. For alkyl substituents at the two positions, steric interactions lead to the cis-products being preferred, their preference increasing with the size of the substituents. Chloro-substitution at tin has both electronic and steric effects. The electron-deficient tin can form stronger bonding interactions, leading to barriers considerably lower than those for alkyl substitution. This is especially pronounced for 1-alkoxy substituents; only for the transition state leading to the cis-product is a six-coordinate tin arrangement found, with a correspondingly very low barrier.

Journal Article↗
PubMed2003

Electronic structure contributions to electron-transfer reactivity in iron-sulfur active sites: 3. Kinetics of electron transfer.

The kinetics of electron transfer for rubredoxins are examined using density functional methods to determine the electronic structure characteristics that influence and allow for fast electron self-exchange in these electron-transport proteins. Potential energy surfaces for [FeX(4)](2-,1-) models confirm that the inner-sphere reorganization energy is inherently small for tetrathiolates ( approximately 0.1 eV), as evidenced by the only small changes in the equilibrium Fe-S bond distance during redox (Deltar(redox) approximately 0.05 A). It is concluded that electronic relaxation and covalency in the reduced state allow for this small in this case relative to other redox couples, such as the tetrachloride. Using a large computational model to include the protein medium surrounding the [Fe(SCys)(4)](2-,1-) active site in Desulfovibrio vulgaris Rubredoxin, the electronic coupling matrix element for electron self-exchange is defined for direct active-site contact (H0(DA)). Simple Beratan-Onuchic model is used to extend coupling over the complete surface of the protein to provide an understanding of probable electron-transfer pathways. Regions of similar coupling properties are grouped together to define a surface coupling map, which reveals that very efficient self-exchange occurs only within 4 sigma-bonds of the active site. Longer-range electron transfer cannot support the fast rates of electron self-exchange observed experimentally. Pathways directly through the two surface cysteinate ligands dominate, but surface-accessible amides hydrogen-bonded to the cysteinates also contribute significantly to the rate of electron self-exchange.

Journal Article↗
PubMed2005

Investigation into the valence electronic structure of norbornene using electron momentum spectroscopy, Green's function, and density functional theories.

Results of a study of the valence electronic structure of norbornene (C(7)H(10)), up to binding energies of 30 eV, are reported. Experimental electron momentum spectroscopy (EMS) and theoretical Green's function and density functional theory approaches were utilized in this investigation. A stringent comparison between the electron momentum spectroscopy and theoretical orbital momentum distributions found that, among the tested models, the combination of the Becke-Perdew functional and a polarized valence basis set of triple-zeta quality provides the best representation of the electron momentum distributions for all 19 valence orbitals of norbornene. This experimentally validated model was then used to extract other molecular properties of norbornene (geometry, infrared spectrum). When these calculated properties are compared to corresponding results from independent measurements, reasonable agreement is typically found. Due to the improved energy resolution, EMS is now at a stage to very finely image the effective topology of molecular orbitals at varying distances from the molecular center, and the way the individual atomic components interact with each other, often in excellent agreement with theory. This will be demonstrated here. Green's Function calculations employing the third-order algebraic diagrammatic construction scheme indicate that the orbital picture of ionization breaks down at binding energies larger than about 22 eV. Despite this complication, they enable insights within 0.2 eV accuracy into the available ultraviolet emission and newly presented (e,2e) ionization spectra. Finally, limitations inherent to calculations of momentum distributions based on Kohn-Sham orbitals and employing the vertical depiction of ionization processes are emphasized, in a formal discussion of EMS cross sections employing Dyson orbitals.

Journal Article↗
PubMed2005

Analysis of the effect of spin-orbit coupling on the electronic structure and excitation spectrum of the Bi2(2-) anion in (K-crypt)2Bi2 on the basis of relativistic electronic structure calculations.

The Bi2(2-) anions that have been characterized in (K-crypt)2Bi2 are isoelectronic with O2 but are diamagnetic and EPR-silent, unlike O2. The UV-vis spectrum measured for (K-crypt)2Bi2 shows two broad absorption peaks located at 2.05 and 2.85 eV, but no absorption at lower energies down to 0.62 eV. To account for these observations, the electronic structures of the isoelectronic diatomic dianions Q2(2-) (Q = N, P, As, Sb, Bi) were compared on the basis of relativistic density functional theory calculations, and the electronic excitations of Bi2(2-) were analyzed on the basis of relativistic configuration interaction calculations. The extent of spin-orbit coupling, brought about by the relativistic effect, increases steadily in the order N < P < As < Sb < Bi such that the "closed-shell" state is more stable than the "open-shell" state for Bi2(2-), while the opposite is the case for N2(2-), P2(2-), As2(2-), and Sb2(2-). The nature of the electronic excitations of Bi2(2-) was assigned and discussed from the viewpoint of molecular orbitals in the absence of spin-orbit coupling.

Journal Article↗
PubMed2002

New layered rubidium rare-earth selenides: syntheses, structures, physical properties, and electronic structures for RbLnSe(2).

The compounds RbLnSe(2) (Ln = La, Ce, Pr, Nd, Sm, Gd, Tb, Ho, Er, Lu) have been synthesized by means of the reactive flux method at 1173 K. These isostructural compounds, which have the alpha-NaFeO(2) structure type, crystallize with three formula units in space group D(3d)(5)-R(-)3m of the trigonal system in cells at T = 153 K of dimensions (a, c in A) La, 4.4313(4), 23.710(3); Ce, 4.3873(3), 23.656(3); Pr, 4.3524(11), 23.655(7); Nd, 4.3231(5), 23.670(4); Sm, 4.2799(4), 23.647(3); Gd, 4.2473(7), 23.689(5); Tb, 4.2197(4), 23.631(3); Ho, 4.1869(6), 23.652(5); Er, 4.1541(8), 23.576(7); Lu, 4.1294(6), 23.614(5). The structure consists of close-packed Se layers in a pseudocubic structure distorted along [111]. The Rb and Ln atoms occupy distorted octahedral sites in alternating layers. The Rb-centered octahedra share edges with the Ln-centered octahedra between layers. Within a given layer, both the Rb-centered and Ln-centered octahedra share edges with themselves. RbTbSe(2) and RbErSe(2) exhibit Curie-Weiss paramagnetism between 5 and 300 K, and RbCeSe(2) exhibits Curie-Weiss paramagnetism between 100 and 300 K. The optical transitions for RbCeSe(2), RbTbSe(2), and RbErSe(2) are in the 2.0-2.2 eV region of the spectrum, both from diffuse reflectance spectra and from first-principles calculations. These calculations also provide insight into the electronic structures and chemical bonding in RbLnSe(2). A quadratic fit for the lanthanide contraction of the Ln-Se distance is superior to the linear one only if the closed-shell atoms La and Lu are included.

Journal Article↗
PubMed2001

Calculation of the electronic structure of carbon films using electron energy loss spectroscopy.

The detailed understanding of the electronic properties of carbon-based materials requires the determination of their electronic structure and more precisely the calculation of their joint density of states (JDOS) and dielectric constant. Low electron energy loss spectroscopy (EELS) provides a continuous spectrum which represents all the excitations of the electrons within the material with energies ranging between zero and about 100 eV. Therefore, EELS is potentially more powerful than conventional optical spectroscopy which has an intrinsic upper information limit of about 6 eV due to absorption of light from the optical components of the system or the ambient. However, when analysing EELS data, the extraction of the single scattered data needed for Kramers Kronig calculations is subject to the deconvolution of the zero loss peak from the raw data. This procedure is particularly critical when attempting to study the near-bandgap region of materials with a bandgap below 1.5 eV. In this paper, we have calculated the electronic properties of three widely studied carbon materials; namely amorphous carbon (a-C), tetrahedral amorphous carbon (ta-C) and C60 fullerite crystal. The JDOS curve starts from zero for energy values below the bandgap and then starts to rise with a rate depending on whether the material has a direct or an indirect bandgap. Extrapolating a fit to the data immediately above the bandgap in the stronger energy loss region was used to get an accurate value for the bandgap energy and to determine whether the bandgap is direct or indirect in character. Particular problems relating to the extraction of the single scattered data for these materials are also addressed. The ta-C and C60 fullerite materials are found to be direct bandgap-like semiconductors having a bandgaps of 2.63 and 1.59eV, respectively. On the other hand, the electronic structure of a-C was unobtainable because it had such a small bandgap that most of the information is contained in the first 1.2 eV of the spectrum, which is a region removed during the zero loss deconvolution.

Journal Article↗
PubMed2005

Properties of ternary insulating systems: the electronic structure of MgSO4.H2O.

Structural and electronic properties of (100)-oriented MgSO(4) and MgSO(4).H(2)O surfaces and the adsorption of water on the latter were investigated theoretically with a combination of ab initio and semiempirical methods. Ab initio electronic structure calculations were based on a density functional theory (DFT)-Hartree-Fock (HF) hybrid approach. The semiempirical method MSINDO was used for the determination of the local adsorption geometry of the water molecule. With the hybrid method good agreement was obtained with the experimental band gap of 7.4 eV determined with electron energy loss spectroscopy of polycrystalline MgSO(4).H(2)O samples under ultrahigh vacuum conditions. The valence bands of the (100) surfaces of both MgSO(4) and MgSO(4).H(2)O are formed mainly by the O2p levels, whereas the S2p states contribute to the lower part of the conduction band. The preferred adsorption site of water at MgSO(4).H(2)O (100) is above a surface Mg atom. The water molecule is stabilized by two additional hydrogen bonds with surface atoms. Only small differences between the electronic structure of MgSO(4).H(2)O and MgSO(4) were observed. Also, the molecular adsorption of water on the MgSO(4).H(2)O surface leads to only small shifts of the electronic energy levels.

Journal Article↗
PubMed2004

Pseudooctahedral complexes of vanadium(III): electronic structure investigation by magnetic and electronic spectroscopy.

A variety of physical methods has been used to probe the non-Kramers, S = 1, V(III) ion in two types of pseudooctahedral complexes: V(acac)(3), where acac = anion of 2,4-pentanedione, and VX(3)(thf)(3), where thf = tetrahydrofuran and X = Cl and Br. These methods include tunable frequency and high-field electron paramagnetic resonance (HFEPR) spectroscopy (using frequencies of approximately 95-700 GHz and fields up to 25 T) in conjunction with electronic absorption, magnetic circular dichroism (MCD), and variable-temperature variable-field MCD (VTVH-MCD) spectroscopies. Variable-temperature magnetic susceptibility and field-dependent magnetization measurements were also performed. All measurements were conducted on complexes in the solid state (powder or mull samples). The field versus sub-THz wave quantum energy dependence of observed HFEPR resonances yielded the following spin Hamiltonian parameters for V(acac)(3): D = +7.470(1) cm(-1); E = +1.916(1) cm(-1); g(x) = 1.833(4); g(y) = 1.72(2); g(z) = 2.03(2). For VCl(3)(thf)(3), HFEPR detected a single zero-field transition at 15.8 cm(-1) (474 GHz), which was insufficient to determine the complete set of spin Hamiltonian parameters. For VBr(3)(thf)(3), however, a particularly rich data set was obtained using tunable-frequency HFEPR, and analysis of this data set gave the folowing: D = -16.162(6) cm(-1); E = -3.694(4) cm(-1); g(x) = 1.86(1); g(y) = 1.90(1); g(z) = 1.710(4). Analysis of the VTVH-MCD data gave spin Hamiltonian parameters in good agreement with those determined by HFEPR for both V(acac)(3) and VBr(3)(thf)(3) and in rough agreement with the estimate for VCl(3)(thf)(3) (D approximately 10 cm(-1), |E/D| approximately 0.18), together with the finding that the value of D is negative for both thf complexes. The electronic structures of these V(III) complexes are discussed in terms of their molecular structures and the electronic transitions observed by electronic absorption and MCD spectroscopies.

Journal Article↗
PubMed2006

Electronic structure analysis and electron detachment energies of polynitrogen pentagonal aromatic anions.

Various decouplings of the electron propagator have been employed to provide theoretical comparison to experimental electron detachment energies for the pyrrolide, imidazolide, and pyrazolide anions. Predictions for isoelectronic anions in which CH groups are replaced by N atoms also are reported. The ab initio electron propagator results agree closely with experimental values, and the associated Dyson orbitals provide a detailed catalog of bonding changes as the number and positions of N atoms vary within the set of pentagonal aromatic anions.

Journal Article↗
PubMed1998

Extension of the Fenske-Hall Molecular Orbital Approach to Tight-Binding Band Structure Calculations: Bulk and Surface Electronic Structure of MoS(2).

A new tight-binding band structure calculation method is described. This method, which is based on the Fenske-Hall molecular orbital technique, should be extremely useful in the study of the bulk and surface electronic structure of inorganic materials. The approximations used in the Fenske-Hall method are reviewed, and the extension of this approach to periodic band structure calculations is outlined. Results of calculations for bulk MoS(2) are in good agreement with previous experimental and theoretical results. Results of calculations for two-dimensional MoS(2) slabs exposing (100) edge planes provide a description of coordinatively unsaturated Mo and S atoms on these edges. Coordinative unsaturation at the Mo atoms introduces new surface states near the Fermi level. Coordinative unsaturation at the S atoms leads to high-energy occupied bands that can be attributed to S lone pair electrons. Surface bonds between Mo atoms and terminal S atoms are stronger than bulk Mo-S bonds, suggesting that terminal S atoms may be more difficult to remove from the edges of MoS(2) than bridging S atoms. Bonding in a single two-dimensional layer of MoS(2) is found to be more ionic than the bonding in the full three-dimensional structure. This effect is also observed in one-dimensional MoS(2) ribbons that expose (100) edge planes. The simplified one-dimensional ribbons will be used for further studies of the electronic structure of the edge planes of MoS(2).

Journal Article↗
PubMed2005

Electronic structure of lithium nickel oxides by electron energy loss spectroscopy.

The electronic structures of NiO, LiNiO2, and NiO2 are studied by the electron energy loss spectroscopy at Ni L(2,3), Ni M(2,3), and O K edges. The Ni L(2,3) edge spectra suggest that the formal charge of nickel is +2 in NiO, +3 with a low-spin state in LiNiO2, and +4 with a low-spin state in NiO2. This is well confirmed by first-principles calculations. The Ni M(2,3) edge spectra show similar chemical shifts to those of the Ni L(2,3) edge. Superposition of the Li K edge spectrum, however, hinders further analysis. Although the formal charge of oxygen is -2 in all the three phases, the O K edge spectra indicate a more remarkable difference in the electronic structure of the oxygen in NiO2 than that in either NiO or LiNiO2. The spectra suggest that lithium extraction from LiNiO2 reinforces the covalent bonding between the oxygen and nickel atoms and causes a notable reduction in electron density at the oxygen atoms.

Journal Article↗