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MAP: an iterative experimental design methodology for the optimization of catalytic search space structure modeling.

One of the main problems in high-throughput research for materials is still the design of experiments. At early stages of discovery programs, purely exploratory methodologies coupled with fast screening tools should be employed. This should lead to opportunities to find unexpected catalytic results and identify the "groups" of catalyst outputs, providing well-defined boundaries for future optimizations. However, very few new papers deal with strategies that guide exploratory studies. Mostly, traditional designs, homogeneous covering, or simple random samplings are exploited. Typical catalytic output distributions exhibit unbalanced datasets for which an efficient learning is hardly carried out, and interesting but rare classes are usually unrecognized. Here is suggested a new iterative algorithm for the characterization of the search space structure, working independently of learning processes. It enhances recognition rates by transferring catalysts to be screened from "performance-stable" space zones to "unsteady" ones which necessitate more experiments to be well-modeled. The evaluation of new algorithm attempts through benchmarks is compulsory due to the lack of past proofs about their efficiency. The method is detailed and thoroughly tested with mathematical functions exhibiting different levels of complexity. The strategy is not only empirically evaluated, the effect or efficiency of sampling on future Machine Learning performances is also quantified. The minimum sample size required by the algorithm for being statistically discriminated from simple random sampling is investigated.

Algorithms↗

Initial neural net construction for the detection of cervical intraepithelial neoplasia by fluorescence imaging.

OBJECTIVE: The aim of this study was to initiate neural net construction for the detection of cervical intraepithelial neoplasia by fluorescence imaging. STUDY DESIGN: Thirty-three women with abnormal Papanicolaou smears underwent fluorescence imaging during colposcopy. With the use of >4000 training pixels and >1000 test pixels, intrapatient nets were constructed from the spectral data of 17 women. An interpatient net that discriminated between cervical intraepithelial neoplasia 1 and normal tissue classes among patients was constructed with the use of >2300 training pixels and >2000 test pixels from 12 women. Average correct classification rates were determined. Sensitivities, specificities, and positive and negative predictive values for cervical intraepithelial neoplasia grade 1 and normal tissue classes were calculated. Extrapolated false-color cervical images were generated. RESULTS: Average correct classification rates were 96.5% for the intrapatient nets and 97.5% for the interpatient net. The sensitivity, specificity, and positive and negative predictive values for cervical intraepithelial neoplasia grade 1 were 98.2%, 98.9%, 71.4%, and 99.9%, respectively. CONCLUSION: Initial results suggest that neural nets that are constructed from fluorescence imaging spectra may offer a potential method for the detection of cervical intraepithelial neoplasia.

Female↗

Predicting reliable regions in protein sequence alignments.

MOTIVATION: Protein sequence alignments have a myriad of applications in bioinformatics, including secondary and tertiary structure prediction, homology modeling, and phylogeny. Unfortunately, all alignment methods make mistakes, and mistakes in alignments often yield mistakes in their application. Thus, a method to identify and remove suspect alignment positions could benefit many areas in protein sequence analysis. RESULTS: We tested four predictors of alignment position reliability, including near-optimal alignment information, column score, and secondary structural information. We validated each predictor against a large library of alignments, removing positions predicted as unreliable. Near-optimal alignment information was the best predictor, removing 70% of the substantially-misaligned positions and 58% of the over-aligned positions, while retaining 86% of those aligned accurately.

Algorithms↗

Computational analysis of crystallization trials.

A system for the automatic categorization of the results of crystallization experiments generated by robotic screening is presented. Images from robotically generated crystallization screens are taken at preset time intervals and analyzed by the computer program Crystal Experiment Evaluation Program (CEEP). This program attempts to automatically categorize the individual crystal experiments into a number of simple classes ranging from clear drop to mountable crystal. The algorithm first selects features from the images via edge detection and texture analysis. Classification is achieved via a self-organizing neural net generated from a set of hand-classified images used as a training set. New images are then classified according to this neural net. It is demonstrated that incorporation of time-series information may enhance the accuracy of classification. Preliminary results from the screening of the proteome of Thermotoga maritima are presented showing the utility of the system.

Algorithms↗

Design of vector quantizer for image compression using self-organizing feature map and surface fitting.

We propose a new scheme of designing a vector quantizer for image compression. First, a set of codevectors is generated using the self-organizing feature map algorithm. Then, the set of blocks associated with each code vector is modeled by a cubic surface for better perceptual fidelity of the reconstructed images. Mean-removed vectors from a set of training images is used for the construction of a generic codebook. Further, Huffman coding of the indices generated by the encoder and the difference-coded mean values of the blocks are used to achieve better compression ratio. We proposed two indices for quantitative assessment of the psychovisual quality (blocking effect) of the reconstructed image. Our experiments on several training and test images demonstrate that the proposed scheme can produce reconstructed images of good quality while achieving compression at low bit rates. Index Terms-Cubic surface fitting, generic codebook, image compression, self-organizing feature map, vector quantization.

Algorithms↗

Enhanced FMAM based on empirical kernel map.

The existing morphological auto-associative memory models based on the morphological operations, typically including morphological auto-associative memories (auto-MAM) proposed by Ritter et al. and our fuzzy morphological auto-associative memories (auto-FMAM), have many attractive advantages such as unlimited storage capacity, one-shot recall speed and good noise-tolerance to single erosive or dilative noise. However, they suffer from the extreme vulnerability to noise of mixing erosion and dilation, resulting in great degradation on recall performance. To overcome this shortcoming, we focus on FMAM and propose an enhanced FMAM (EFMAM) based on the empirical kernel map. Although it is simple, EFMAM can significantly improve the auto-FMAM with respect to the recognition accuracy under hybrid-noise and computational effort. Experiments conducted on the thumbnail-sized faces (28 x 23 and 14 x 11) scaled from the ORL database show the average accuracies of 92%, 90%, and 88% with 40 classes under 10%, 20%, and 30% randomly generated hybrid-noises, respectively, which are far higher than the auto-FMAM (67%, 46%, 31%) under the same noise levels.

Algorithms↗

Analysis and simulation of a mixed-mode neuron architecture for sensor conditioning.

The design, analysis, and system simulation of an adaptive processor based on a current-mode mixed analog-digital circuit is presented. The processor consists of a mixed four-quadrant multiplier and a current conveyor that performs the nonlinearity. Schematics, circuit parameters, and a high-level model are shown. The results achieved when applying this processor model to conditioning several sensor types are discussed.

Algorithms↗

Feed-forward support vector machine without multipliers.

In this letter, we propose a coordinate rotation digital computer (CORDIC)-like algorithm for computing the feed-forward phase of a support vector machine (SVM) in fixed-point arithmetic, using only shift and add operations and avoiding resource-consuming multiplications. This result is obtained thanks to a hardware-friendly kernel, which greatly simplifies the SVM feed-forward phase computation and, at the same time, maintains good classification performance respect to the conventional Gaussian kernel.

Algorithms↗

Generalized core vector machines.

Kernel methods, such as the support vector machine (SVM), are often formulated as quadratic programming (QP) problems. However, given m training patterns, a naive implementation of the QP solver takes O(m3) training time and at least O(m2) space. Hence, scaling up these QPs is a major stumbling block in applying kernel methods on very large data sets, and a replacement of the naive method for finding the QP solutions is highly desirable. Recently, by using approximation algorithms for the minimum enclosing ball (MEB) problem, we proposed the core vector machine (CVM) algorithm that is much faster and can handle much larger data sets than existing SVM implementations. However, the CVM can only be used with certain kernel functions and kernel methods. For example, the very popular support vector regression (SVR) cannot be used with the CVM. In this paper, we introduce the center-constrained MEB problem and subsequently extend the CVM algorithm. The generalized CVM algorithm can now be used with any linear/nonlinear kernel and can also be applied to kernel methods such as SVR and the ranking SVM. Moreover, like the original CVM, its asymptotic time complexity is again linear in m and its space complexity is independent of m. Experiments show that the generalized CVM has comparable performance with state-of-the-art SVM and SVR implementations, but is faster and produces fewer support vectors on very large data sets.

Algorithms↗

Improvements of complex-valued Hopfield associative memory by using generalized projection rules.

In this letter, new design methods for the complex-valued multistate Hopfield associative memories (CVHAMs) are presented. We show that the well-known projection rule proposed by Personnaz et al. can be generalized to complex domain such that the weight matrix of the CVHAM can be designed by using a simple and effective method. The stability of the proposed CVHAM is analyzed by using energy function approach which shows that in synchronous update mode the proposed model is guaranteed to converge to a fixed point from any given initial state. Moreover, the projection geometry of the generalized projection rule (GPR) is discussed. In order to enhance the recall capability, a strategy of eliminating the spurious memories is also reported. The validity and the performance of the proposed methods are investigated by computer simulation.

Algorithms↗

Feature space interpretation of SVMs with indefinite kernels.

Kernel methods are becoming increasingly popular for various kinds of machine learning tasks, the most famous being the support vector machine (SVM) for classification. The SVM is well understood when using conditionally positive definite (cpd) kernel functions. However, in practice, non-cpd kernels arise and demand application in SVMs. The procedure of "plugging" these indefinite kernels in SVMs often yields good empirical classification results. However, they are hard to interpret due to missing geometrical and theoretical understanding. In this paper, we provide a step toward the comprehension of SVM classifiers in these situations. We give a geometric interpretation of SVMs with indefinite kernel functions. We show that such SVMs are optimal hyperplane classifiers not by margin maximization, but by minimization of distances between convex hulls in pseudo-Euclidean spaces. By this, we obtain a sound framework and motivation for indefinite SVMs. This interpretation is the basis for further theoretical analysis, e.g., investigating uniqueness, and for the derivation of practical guidelines like characterizing the suitability of indefinite SVMs.

Algorithms↗

Machine learning for science: state of the art and future prospects.

Recent advances in machine learning methods, along with successful applications across a wide variety of fields such as planetary science and bioinformatics, promise powerful new tools for practicing scientists. This viewpoint highlights some useful characteristics of modern machine learning methods and their relevance to scientific applications. We conclude with some speculations on near-term progress and promising directions.

Algorithms↗

Application of the recommendation architecture to telecommunications network management.

The recommendation architecture has been proposed as a system architecture which can enable a system to learn to perform a complex combination of interrelated functions. The capability of a system with the recommendation architecture to learn to manage complex telecommunication backbone networks has been investigated. A network model with a number of nodes and links and carrying realistic but randomly generated traffic was used as the target for the management system. Traffic data taken from the model was used as input to the recommendation architecture system. The traffic data was organized into inputs once every 5 minutes, and the management system organized these inputs into a hierarchy of repetition similarity. It was demonstrated that the outputs of this hierarchy provided information on the condition of the network. This output information was a compressed version of the inputs which correlated with major network conditions.

Computer Communication Networks↗

High order statistics for image classification.

This paper addresses the problem of image classification using local information which is aggregated to provide global representation of different image classes. Local information is adaptively extracted from an image database using Independent Component Analysis (ICA) which provides a set of localized, oriented, and band-pass filters selective to independent features of the images. Local representation using ICA techniques has been previously investigated by several researchers. However, very little work has been done on further use of these representations to provide more complex and global description of images. In this paper, we present an algorithm which uses the energy of a minimal set of ICA filters to provide class-specific signatures which are shown to be strongly discriminant. Computer simulations are carried on two image databases, one consisting of five classes--referred to as categories--(buildings, rooms, mountains, forests and beaches) and one consisting of a set of 30 objects from multiple views for viewpoint invariant object recognition. The classification performance of the algorithm using both Independent and Principal Component Analyses are reported and discussed.

Image Processing, Computer-Assisted↗

On computing the fuzzifier in downward arrow FLVQ: a data driven approach.

Clustering is an important research area that has practical applications in many fields. Fuzzy clustering has shown advantages over crisp and probabilistic clustering, especially when there are significant overlaps between clusters. Most analytic fuzzy clustering approaches are derived from Bezdek's fuzzy c-means algorithm. One major factor that influences the determination of appropriate clusters in these approaches is an exponent parameter, called the fuzzifier. To our knowledge, no theoretical reason leading to an optimal setting of this parameter is available. This paper presents the development of an heuristic scheme for determining the fuzzifier. This scheme creates close interactions between the fuzzifier and the data set to be clustered. Experimental results in clustering IRIS data and in code book design required for image compression reveal a good performance of our proposal.

Algorithms↗

Fingerprint matching using recurrent autoassociative memory.

An efficient method for fingerprint searching using recurrent autoassociative memory is proposed. This algorithm uses recurrent autoassociative memory, which uses a connectivity matrix to find if the pattern being searched is already stored in the database. The advantage of this memory is that a big database is to be searched only if there is a matching pattern. Fingerprint comparison is usually based on minutiae matching, and its efficiency depends on the extraction of minutiae. This process may reduce the speed, when large amount of data is involved. So, in the proposed method, a simple approach has been adopted, wherein first determines the closely matched fingerprint images, and then determines the minutiae of only those images for finding the more appropriate one. The gray level value of pixels along with its neighboring ones are considered for the extraction of minutiae, which is more easier than using ridge information. This approach is best suitable when database size is large.

Algorithms↗

ACE16k: a 128x128 focal plane analog processor with digital I/O.

This paper presents a new generation 128x128 Focal-Plane Analog Programmable Array Processor -FPAPAP, from a system level perspective. It has been manufactured in a 0.35 microm standard digital 1P-5M CMOS technology. It has been designed to achieve the high-speed and moderate-accuracy -8b- requirements of most real time -early-vision applications. External data interchange and control are completely digital. The chip contains close to four million transistors, 90% of them working in analog mode. It achieves peak computing values of 0.33TeraOPS while keeping power consumption at reasonable limits -82.5GOPS/W. Preliminary experimental results are also provided in the paper.

Computers, Analog↗