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PubMed2006

On metapopulation resistance to drift and extinction.

The spatial configuration of metapopulations (numbers, sizes, and localization of patches) affects their ability to resist demographic extinction and genetic drift, but sometimes with opposite effects. Small and isolated patches, for instance, contribute marginally to demography but may play a large role in genetics by maintaining a sizeable amount of genetic variance among demes. In source-sink systems, similarly, connectivity may be beneficial in terms of effective size, but detrimental in terms of survival, by lowering the reproductive value of source populations. How to reconcile these opposite effects? Here we propose an analytical framework that integrates fixation time (ability to resist genetic drift) and extinction time (ability to resist demographic extinction) into a single index of resistance, measuring the ability of a metapopulation to maintain its demo-genetic integrity. We then illustrate with numerical examples how conflicting demands may be resolved.

Biodiversity↗

PubMed2005

Evidence for genetic drift in the diversification of a geographically isolated population of the hyperthermophilic archaeon Pyrococcus.

Genetic drift is a mechanism of population divergence that is important in the evolution of plants and animals but is thought to be rare in free-living microorganisms because of their typically large population sizes and unrestricted means of dispersal. We used both phylogenetic and insertion sequence (IS) element analyses in hyperthermophilic archaea of the genus Pyrococcus to test the hypothesis that genetic drift played an important role in the diversification of these microorganisms. Multilocus sequence typing of a collection of 36 isolates of Pyrococcus, from different hydrothermal systems in the Pacific Ocean and the Mediterranean Sea, revealed that Pyrococcus populations from different geographic locations are genetically differentiated. Analysis of IS elements in these isolates exposed their presence in all individuals of only one geographically isolated lineage, that of Vulcano Island in the Mediterranean Sea. Detailed sequence analysis of six selected IS elements in the Vulcano population showed that these elements cause deleterious genomic alterations, including inactivation of gene function. The high frequency of IS elements in the sampled population together with their observed harmful effects in the genome of Pyrococcus provide molecular evidence that the Vulcano Island population of Pyrococcus is geographically isolated and that those genetic mobile elements have been brought up to high frequency by genetic drift. Thus, genetic drift resulting from physical isolation should be considered as a factor influencing differentiation in prokaryotes.

Base Sequence↗

PubMed2005

Spatial mosaic formation through frequency-dependent selection in Müllerian mimicry complexes.

Although contemporary models of Müllerian mimicry have considered the movement of interfacial boundaries between two distinct mimetic forms, and even the possibility of polymorphisms in two patch systems, no model has considered how multiple forms of Müllerian mimics might evolve and be maintained over large geographical areas. A spatially explicit individual-based model for the evolution of Müllerian mimicry is presented, in which two unpalatable species are distributed over discrete cells within a regular lattice. Populations in each cell are capable of genetic drift and experience localized dispersal as well as frequency-dependent selection by predators. When each unpalatable prey species was introduced into a random cell and allowed to spread, then mimicry evolved throughout the system in the form of a spatial mosaic of phenotypes, separated by narrow "hybrid zones". The primary mechanism generating phenotypic diversity was the occasional establishment of new mutant forms in unoccupied cells and their subsequent maintenance (and spread) through frequency-dependent selection. The mean number of discrete clusters of the same morph that formed in the lattice was higher the higher the intensity of predation, and higher the lower the dispersal rate of unpalatable prey. Under certain conditions the hybrid zones moved, in a direction dependent on the curvature of their interfacial boundaries. However, the mimetic mosaics were highly stable when the intensity of predation was high and the rate of prey dispersal was low. Overall, this model highlights how a stable mosaic of different mimetic forms can evolve from a range of starting conditions through a combination of chance effects and localized frequency-dependent selection.

Adaptation, Biological↗

PubMed1977

Visual movement perception in the cat is directionally selective.

Behavioral experiments show that the visual system of cat contains mechanisms which are selective for direction of stimulus movement. The cat's contrast detection threshold for a drifting grating is unaffected by the addition of a grating moving in the opposite direction; this same pattern of results is found for human observers. The convergence of cat and human psychophysical data suggests that man's brain may hold direction-specific neurons, similar to those known to exist in the cat brain.

Animals↗

PubMed2005

Stable gradient nanoflow LC-MS.

This paper demonstrates improved nanoflow LC-MS performance on a QqTOF instrument with the incorporation of a heated nanoflow interface (particle discriminator) and a nebulizer assisted sprayer. It is shown that the nebulizer broadens the usable range of electrospray potentials, simplifying the tuning procedure, particularly for negative mode nanoflow gradients. The improved desolvation capability with the particle discriminator results in signal/noise improvements of approximately 3.5x for negative ion mode samples prepared in predominantly acidified water as well as increased ion current stability. For nanoLC applications, the combined desolvation capabilities of a counter-current gas and heated laminar flow chamber provide reduced background, increased signal stability, reduced background drift, and improved protein sequence coverage when compared with data generated with only a counter-current gas for desolvation. This system is capable of subfemtomole nanoflow LC-MS sensitivity in both positive and negative ion mode across the solvent gradient.

Journal Article↗

PubMed1988

Self-organization of the fluid mosaic of charged channel proteins in membranes.

Electrically charged ion channels in a fluid membrane may form dissipative structures driven by a concentration gradient of salt. On a molecular level the effect is due to dissipative attractive forces; the channel currents induce local gradients of the membrane potential that interact with the protein charge. Self-organization by "charged channel condensation" is treated on a phenomenological level: Smoluchowski's equation describing diffusion and drift of the membrane proteins and Kelvin's equation describing the dynamics of the membrane potential are considered as a coupled system of equations. The patterns of the two morphogens, the membrane protein and the membrane potential, are controlled by global parameters--the average density of charged channels, the level of their reversal potential, and the size of the membrane.

Ion Channels↗

PubMed2005

WinPop 2.5: software for representing population genetics phenomena.

The curriculum for genetics courses is shifting from a classical to a more molecular genetics focus, increasing the importance of subjects such as population genetics. Population genetics is a computational and statistical field that requires a good understanding of the nature of stochastic events. It is a difficult field for biology students with a limited mathematical background and there is a need for visualisation tools to facilitate understanding by the use of practical examples. WinPop provides students and researchers with a visual tool to allow the simulation and representation of population genetics phenomena. WinPop is a user-friendly software meant for use in population genetics courses and basic research. WinPop 2.5 contains six different modules that represent and simulate population genetics models. Genotype and allele frequencies are calculated under the different models: panmixia, genetic drift, assortative matings, selection, gene flow and mutation. The program's interface presents information in Cartesian graphics and isosceles triangular coordinate systems, allowing the user to save graphical and textual data output from the simulations. WinPop is developed in Visual Basic 6.0 and uses Windows 95 and higher. WinPop 2.5 can be downloaded from http://www.genedrift.org/winpop.php.

Algorithms↗

PubMed1986

Seeing objects in motion.

This paper reports estimates of the conjoint spatiotemporal tuning functions of the neural mechanisms of the human vision system which detect image motion. The functions were derived from measurements of the minimum contrast necessary to detect the direction of drift of a sinusoidal grating, in the presence of phase-reversed masking gratings of various spatial and temporal frequencies. A mask of similar spatial and temporal frequencies to the test grating reduces sensitivity considerably, whereas one differing greatly in spatial or temporal frequency has little or no effect. The results show that for test gratings drifting at 8 Hz, the tuning function is bandpass in both space and time, peaked at the temporal and spatial frequency (SF) of the test (SFs were 0.1, 1 or 5 c deg-1; c represents cycles throughout). For a grating of 5 c deg-1 drifting at 0.3 Hz, the function is bandpass in space but lowpass in time. Fourier transform of the frequency results yields a function in space-time which we term the 'spatiotemporal receptive field'. For movement detectors (bandpass in space and time) the fields comprise alternating ridges of opposing polarity, elongated in space-time along the preferred velocity axis of the detector. We suggest that this organization explains how detectors analyse form and motion concurrently and accounts, at least in part, for a variety of perceptual phenomena, including summation, reduction of motion smear, metacontrast, stroboscopic motion and spatiotemporal interpolation.

Differential Threshold↗

PubMed1974

The postural response of normal dogs to sinusoidal displacement.

1. Normal dogs were trained to adopt a laterally symmetric stance on a horizontal platform. Sinusoidal oscillation of the platform in the cephalocaudal direction caused the dogs to adopt a strategy of response which would keep them from falling down during the period of imposed motion or perturbation.2. A Fourier analysis of the response variables provided a quantitative measure of the distortion in the induced movement at the various hind leg joints and in the motion of the body. Certain aspects of the distortion could be accounted for by recognized random events such as drift and panting. The remainder of the distortion was task related and therefore provided evidence that the dog's postural control system behaved essentially as a non-linear system.3. The motion of the body was less distorted than the motion at the joints. The frequency response of the body motion resembled that of a second order linear system, but the amplitude of the body motion did not vary in constant proportion with changes in the amplitude of the input. Further, the phase relation between body motion and platform motion was not constant when the amplitude of the input was changed. Therefore, it was concluded that the control of the body position was probably non-linearly related to the input disturbance but that the low pass filter characteristics tended to minimize the appearance of distortion in that system output.4. Control of the position of the hind limb is related to the control of the torque generated at the hind limb joints. To the extent that joint angle and change in joint angle are related to the torque at a joint, the distortion of the motion at the joints clearly demonstrates that control of the hind limb during this postural task was non-linearly related to the sinusoidal input.5. The uniformity of the response parameters, as assessed from the Fourier coefficients, indicated that all of the tested dogs adopted the same or nearly the same strategy for solving the problem of adjusting their postural control in response to the perturbation. Therefore, a reasonable hypothesis for future testing is that the central programme which generates this particular postural response will be structured similarly from one dog to the next.

Animals↗

PubMed1981

Coenzyme M derivatives and their effects on methane formation from carbon dioxide and methanol by cell extracts of Methanosarcina barkeri.

Extracts of Methanosarcina barkeri reduced methanol and CO2 to CH4 in the presence of H2 and converted methanol stoichiometrically into CH4 and CO2 in the absence of H2. In dialyzed cell-free extracts these reactions were stimulated by 2-mercaptoethanesulfonic acid (coenzyme M) and some derivatives (acetyl and formylcoenzyme M and the oxidized form of coenzyme M), which could be converted to coenzyme M by enzyme systems present in the extracts. Methylcoenzyme M could not be used in these systems.

Carbon Dioxide↗

PubMed1988

Computerized quality control of radioimmunoassay in Korea.

Automated data processing and quality control of radioimmunoassays offer not only increased speed but also a more thorough and statistically rigorous analysis of results. An external quality assessment scheme for serum thyroxine, triiodothyronine and thyroid stimulating hormone (TSH) assays was performed in five nuclear medicine laboratories in Korea to compare with the assay performances of the World Health Organization Radioimmunoassay Program. The required radioimmunoassay kits were supplied through the International Atomic Energy Agency (IAEA). We have determined the weighted root mean squared error, and variance ratio as the indices of standard curve and also the average batch coefficient of variation (ABCV) as the parameters of response error relationship curve and precision profile. There was a good fit for the triiodothyronine assay, but 3 of 5 laboratories showed possible bad fit in the T4 and TSH assay systems. The ABCV was less than 5 percent for the T3 and T4 assay system, however for the TSH system, only 1 laboratory showed the ABCV value of less than 5 percent. We have also calculated the within batch variation (drift) and between laboratory variations.

Electronic Data Processing↗

PubMed2005

A pdpa laser-based measuring set-up for the characterisation of spray nozzles.

The characteristics of agricultural sprays belong to the most critical factors affecting spray drift, deposition on plants, spray coverage and biological efficacy. Hence, within the framework of a research project about agricultural spray drift, a measuring set-up for the characterisation of spray nozzles using a Phase Doppler Particle Analyser (PDPA) was developed. This set-up is able to measure droplet sizes and velocities based on light-scattering principles. It is composed of different parts i.e.: a climate room, a spray unit, a three-dimensional automated positioning system and an Aerometrics PDPA 1D system. This paper presents a detailed description of this measuring set-up along with some first measuring results. These measurements will be used as an input for a Computational Fluid Dynamics drift-prediction model and to classify nozzles based on their driftability.

Agriculture↗

PubMed2003

Clinical performance characteristics of a new photometric lithium assay: a multicenter study.

BACKGROUND: Therapeutic monitoring of lithium is important because of its narrow therapeutic range and therapeutic index, low protein binding and single route of elimination. We characterized a new photometric method that avoids the specialized requirements of ion-specific electrode (ISE), atomic absorption and flame emission methods. METHODS: Minimum detectable concentration (MDC), linearity and calibration drift over 65 days were determined. Within-run, between-run and total imprecision were assessed over 20 days in accordance with NCCLS EP5. Interference studies were conducted for 46 endogenous and exogenous compounds. Two production lots of the new photometric method (LI) were compared on the Dimension(R) RxL system and two ISE methods [Ciba Corning (n=124) and DuPont (n=131)], an established photometric method (Vitros) 950 system; n=63) and atomic absorption (Thermo-Jerell Ash; n=63). RESULTS: The MDC was 0.04 mmol/l. Linearity was demonstrated from 0.12 to 5.8 mmol/l by the regression equation: observed=(1.01 x expected)-0.0005 mmol/l, S(y/x)=0.03 mmol/l, r=0.999. Drift for the lithium calibrators over the 65-day study period was <5%, except for the lowest calibrator, which showed 0.04 mmol/l drift. None of the 46 potential interfering substances showed greater than a 6.5% difference between control and test solutions. ISE method comparisons showed the following: LI=(1.08 x Ciba Corning ISE)-0.15 mmol/l, S(y/x)=0.05, r=0.999, and LI=(1.03 x DuPont ISE)+0.00 mmol/l, S(y/x)=0.06 mmol/l, r=0.999. Comparison of the LI method with the atomic absorption and Vitros system showed proportionality error <10%. Bias between the LI method and atomic absorption was 7%, substantially less than that documented in proficiency surveys for the Vitros and other systems. No lot-to-lot or site-to-site differences were observed. CONCLUSION: This new photometric method is an attractive alternative for Li measurement and is adaptable to instruments having spectrophotometric capability.

Binding, Competitive↗

PubMed2004

Automatic real-time surveillance of eye position and gating for stereotactic radiotherapy of uveal melanoma.

A new prototype (hardware and software) for monitoring eye movements using a noninvasive technique for gated linac-based stereotactic radiotherapy (SRT) of uveal melanoma was developed. The prototype was tested within the scope of a study for 11 patients. Eye immobilization was achieved by having the patient fixate a light source integrated into the system. The system is used in conjunction with a Head&Neck mask system for immobilization, and uses infrared tracking technology for positioning (both BrainLAB AG Heimstetten/Germany). It was used during CT and MR image acquisition as well as during all of five treatment fractions (6 MeV, 5 x 12 Gy to 80% isodose) to guarantee identical patient setup and eye rotational state during treatment planning and treatment delivery. Maximum temporal and angular deviations tolerated during treatment delivery can be chosen by the physician, the radiation then being interrupted automatically and instantaneously if those criteria are being exceeded during irradiation. A graphical user interface displays life video images of the treated eye and information about the current and previous rotational deviation of the eye from its reference treatment position. The physician thus has online access to data directly linked to the success of the treatment and possible side effects. Mean angular deviations during CT/MR scans and treatment deliveries ranged from 1.61 degrees to 3.64 degrees (standard deviations 0.87 degrees to 2.09 degrees ) which is in accordance with precision requirements for SRT. Typical situations when preset deviation criteria were exceeded are slow drifts (fatigue), sudden large eye movements (irritation), or if patients closed their eyes (fatigue). In these cases radiation was reliably interrupted by the gating system. In our clinical setup the novel system for computer-controlled eye movement gated treatments was well tolerated by all patients. The system yields quantitative real-time information about the eye's rotational state with respect to a reference position (treatment planning situation). Together with the possibility of performing movement-gated treatments of uveal melanoma, the system thus greatly improves the quality of this treatment.

Eye↗

PubMed2005

Chance, explanation, and causation in evolutionary theory.

Chance comes into plays at many levels of the explanation of the evolutionary process; but the unity of sense of this category is problematic. The purpose of this talk is to clarify the meaning of chance at various levels in evolutionary theory: mutations, genetic drift, genetic revolutions, ecosystems, macroevolution. Three main concepts of chance are found at these various levels: luck (popular concept), randomness (probabilistic concept), and contingency relative to a given theoretical system (epistemological concept). After identifying which concept(s) of chance fit(s) with these levels, the question is raised whether these concepts can be reduced to a smaller number, and whether chance in evolutionary theory has a subjective or an objective sense.

Adaptation, Biological↗

PubMed1996

Contrast gain control in first- and second-order motion perception.

A novel pedestal-plus-test paradigm is used to determine the nonlinear gain-control properties of the first-order (luminance) and the second-order (texture-contrast) motion systems, that is, how these systems' responses to motion stimuli are reduced by pedestals and other masking stimuli. Motion-direction thresholds were measured for test stimuli consisting of drifting luminance and texture-contrast-modulation stimuli superimposed on pedestals of various amplitudes. (A pedestal is a static sine-wave grating of the same type and same spatial frequency as the moving test grating.) It was found that first-order motion-direction thresholds are unaffected by small pedestals, but at pedestal contrasts above 1-2% (5-10 x pedestal threshold), motion thresholds increase proportionally to pedestal amplitude (a Weber law). For first-order stimuli, pedestal masking is specific to the spatial frequency of the test. On the other hand, motion-direction thresholds for texture-contrast stimuli are independent of pedestal amplitude (no gain control whatever) throughout the accessible pedestal amplitude range (from 0 to 40%). However, when baseline carrier contrast increases (with constant pedestal modulation amplitude), motion thresholds increase, showing that gain control in second-order motion is determined not by the modulator (as in first-order motion) but by the carrier. Note that baseline contrast of the carrier is inherently independent of spatial frequency of the modulator. The drastically different gain-control properties of the two motion systems and prior observations of motion masking and motion saturation are all encompassed in a functional theory. The stimulus inputs to both first- and second-order motion process are normalized by feedforward, shunting gain control. The different properties arise because the modulator is used to control the first-order gain and the carrier is used to control the second-order gain.

Contrast Sensitivity↗

PubMed1994

Toxicity of a new molt-inducing insecticide (RH-5992) to aquatic macroinvertebrates.

The molt-inducing insecticide RH-5992, a potent ecdysone agonist, is being evaluated for potential use in forestry to control defoliating lepidopterans. The possible adverse effects of RH-5992 on nontarget aquatic organisms were studied in two test systems. Acute lethal effects were determined for one aquatic amphipod and 11 species of aquatic insects in laboratory flowthrough toxicity tests. Lethal and behavioral effects (drift response) on the amphipod and 8 species of stream insects were also evaluated under natural environmental conditions and more realistic exposure regimens in outdoor stream channels. There were no significant effects on drift or survival of the test species exposed to RH-5992 at the maximum test concentration of 3.5 mg/liter (100x the worst-case expected environmental concentration) in laboratory toxicity tests and stream channel treatments. Mortality of the amphipod Gammarus sp. in one toxicity test was considered an artifact, because there was no significant mortality in subsequent tests at concentrations up to 7.0 mg/liter, or in stream channels treated at 3.5 mg/liter. Yellow birch leaves were sprayed with RH-5992 at a rate of 50 g/ha and tested for residual toxic effects on two species of shredding invertebrates in the outdoor stream channels. There was no feeding inhibition or lethal effect on either test species resulting from consumption of the contaminated foliage. The candidate insecticide RH-5992 does not appear to pose undue risk of direct adverse effects to aquatic macroinvertebrates, particularly in water bodies where residues are likely to be short lived following aerial applications (e.g., lotic systems).

Animals↗

PubMed1998

[Function of modified YSI membrane in glucose sensor].

This study was designed to improve the stability, accuracy and interference resistance of the glucose sensor system and to fomodify the correlation between electrode current and glucose concentration. Catalase was immobilized in YSI membrane. Experiments in vitro were conducted in different concentrations of glucose or ascorbic acid or paracetomol. The results showed the background current, 0.37 +/- 0.06 nA; the drift values in 0 mM G.S. and 10 mM G.S. were (0.20 +/- 0.14)%/30 hr and (3.22 +/- 0.40)%/30 hr respectively. The mean value of drift in 10 mM G.S. was 0.103% mM-1hr-1. The correlation between electrode current and glucose concentration gave satisfaction (r = 0.986); it ranged from 0 mM G.S. to 20 mM G.S. Lower concentration of ascorbic cid could not interfere n the glucose sensor system; higher concentration of ascorbic acid and paracetomol only produced very low interference current. These suggest that the modified YSI membrane contributes greatly to a stable, accurate and reliable glucose sensor system.

Biosensing Techniques↗