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Application of information theory and extreme physical information to carcinogenesis.

Cellular information dynamics during somatic evolution of the malignant phenotypes are complex and poorly understood. Accumulating, random genetic mutations and, therefore, loss of genomic information appears necessary for carcinogenesis. However, additional control parameters can be inferred because unconstrained mutagenesis would ultimately produce cellular information degradation incompatible with life. Similarly, the stability of some genomic segments, such as those controlling proliferation and metabolism, indicates the presence of selective mutational constraints. By applying Information Theory and Extreme Physical Information (EPI) analysis, we demonstrate that the phenotypic characteristics and growth pattern of cancer populations are emergent properties resulting from the nonlinear dynamics of accumulating, random genetic mutations and tissue selection factors. Maximum quantitative loss of transgenerational information is demonstrated in genomic segments encoding negative or neutral evolutionary properties. This is most evident in the progressive dedifferentiation observed during carcinogenesis and may terminate in a differentiation "information catastrophe" producing decoherent cellular morphology and function. In contrast, microenvironmental selection pressures preserve genomic information controlling properties that confer selective growth advantages even in the presence of a high background mutation rate. Thus, phenotypic traits characteristically retained by tumor populations can be identified as critical selection parameters favoring clonal proliferation. The information model of carcinogenesis is tested by applying EPI analysis to predict tumor growth dynamics. We found that cellular proliferation attributable to information degradation will produce power law tumor growth with an exponent of 1.62. Data from six published studies that use sequential mammograms to measure the volume of small, untreated human breast cancers demonstrate power law tumor growth with a mean exponent value of 1.73 +/- 0.23. Other predictions including exponential growth of tumor cells in vitro are also supported by experimental observations. The nonlinear dynamics of stochastic information loss constrained by somatic evolution indicate that carcinogenesis will not be associated with any predictable, fixed sequence of genomic alterations. Rather, sporadic clinical cancers are emergent structures produced by multiple, fundamentally nondeterministic genetic pathways.

Animals↗

Nonlinear analysis of autonomic responses in a therapist during psychotherapy.

An experienced, analytically trained psychotherapist was physiologically monitored while conducting a 28-session exploratory psychotherapy with a patient suffering a pathological grief reaction. The therapist's autonomic responses, as manifested by perturbations in heart rate, were subjected to nonlinear dynamical analysis, yielding a series of characteristic "trajectories" representing the flow of these responses in time. We report interrater reliability and present descriptive statistics resulting from classifying these trajectories into four types. Interesting but preliminary clinical correlates of these autonomic trajectories were obtained by having the therapist review videotaped excerpts of the sessions and complete a self-report questionnaire. In conjunction with a previous report focusing on autonomic responses in the patient, this study further demonstrates the application of nonlinear dynamical methods to investigations of psychophysiology in the setting of psychotherapy, and perhaps in dyadic interactions more generally.

Adult↗

Baroreflex sensitivity, heart rate, and blood pressure variability in normal pregnancy.

Heart rate variability is a relevant predictor of cardiovascular risk in humans. However, to use heart and blood pressure (BP) variability or baroreflex sensitivity as markers for hypertensive pregnancy disorders, it is first necessary to describe these parameters in normal pregnancy. To accommodate the complexities of autonomic cardiovascular control we added parameter domains of nonlinear dynamics to conventional linear methods of time and frequency domains. The BP of 27 women with normal pregnancy and 14 nonpregnant women were monitored at a high resolution (200 Hz sampling frequency) using a Portapres for 30 min. The pregnant women were divided into groups of 32 or less or greater than 32 weeks of gestation. Pregnant and nonpregnant women were classified into subclasses of maternal age of less than 28 or 28 or more years. Except for two single parameter domains, we found no significant differences in heart rate and BP variability for pregnant women with different gestational age or different maternal age. Moreover, no significant differences in spontaneous baroreflex sensitivity could be found between pregnant women regardless of either their age or gestational age. In contrast, all measures of nonlinear dynamics of heart rate variability as well as all parameter domains of spontaneous baroreflex sensitivity showed significant changes between pregnant and nonpregnant women, whereas BP variability did not differ between those groups. This complex assessment of autonomic cardiovascular regulation has shown that the parameters tested are stable in the second half of normal pregnancy, and might have the potential to be excellent indicators of pathophysiologic conditions.

Adult↗

Advances in two-dimensional gel matching technology.

For many years, two-dimensional gel electrophoresis has been the method of choice for the investigation of complex mixtures of proteins. Although there are a number of emerging technologies that can be applied to proteomics, none can yet yield routinely the breadth of information available from two-dimensional gels. To be able to obtain instant information regarding molecular mass and pI, as well as to highlight quickly the expression changes or unique proteins across a gel series requires sophisticated and powerful image analysis software. The range of software products offered by Nonlinear Dynamics covers all levels of user application and throughput, from the user-guided Phoretix two-dimensional approach, when working with a small number of gels, to the automatic processing of large numbers of gels with minimal user intervention with Progenesis. Integration of the analysis software with powerful database components allows advanced gel comparisons and data mining to be performed with statistical verification of the results. Spot pick lists can be quickly created and automatically linked to a number of commercially available spot picking robots further increasing the support for proteomics research. The importance of image analysis for accurate, reliable and meaningful results will be discussed. Recent advances in development, with particular attention placed on the impact of noise contamination within gels, are illustrated and how the Progenesis product from Nonlinear Dynamics can be utilized to get the most from two-dimensional gel electrophoresis is shown.

Electrophoresis, Gel, Two-Dimensional↗

Familial and genetic influences on heart rate variability.

The authors tested the hypothesis of a genetic influence on heart rate variability (HRV). This genetic influence was assessed in 62, twin pairs (30 monozygotic, 32 dizygotic). From all twins, long-term electrocardiographic records were obtained, edited, and analyzed. Heart rate variability analysis was performed on the basis of parameters from time-domain, frequency-domain, and nonlinear dynamics. First, the parameter distances between the two twins of a pair and between one of the two and a third randomly selected person of another age-matched twin pair (ST1) were compared. Second, the parameter distances between the two twins and the averaged parameter distances of these two twins to all other age-matched persons (ST2) were compared. Finally, the averaged differences in parameter values between monozygotic and dizygotic age-matched twin pairs were compared. For statistical analysis, the nonparametric Wilcoxon's matched-pair signed rank test and parametric t-test for paired samples were used. Twin pairs show a significant lower difference in parameter values than other randomly selected and age-matched couples (P < .001 in ST1 and ST2). This reflects a considerable familial influence. Most parameters of the time-domain, none of the frequency-domain, and half of the nonlinear dynamics show significant differences between twin pairs and nontwin pairs. As a result of the comparison between monozygotic and dizygotic twin pairs, a significant lower parameter difference in the monozygotic pairs (P < .05) is found. These results suggest that there is a genetic component in heart rate generation and HRV, in addition to family environmental influences. Analysis of HRV might become a useful method in phenotyping severe genetic changes in cardiovascular diseases.

Adult↗

Affordance-controlled bifurcations of action patterns in martial arts.

Effects of participant-target distance and perceived handstriking efficiency on emergent behavior in the martial art of boxing were investigated, revealing affordance-controlled nonlinear dynamical effects (i.e. bifurcations) within the participant--target system. Results established the existence of critical values of scaled distances for emergence of first time excitations and annihilations of a diverse range of boxing actions i.e. on the appearance and dissolution of jabs, hooks and uppercuts. Reasons for the action diversity were twofold: (a) topological discontinuous changes (bifurcations) in the number of possible handstrikes, i.e. motor solutions to the hitting task; (b) fine modification of probabilities of emergence of striking patterns. Exploitation of a 'strikeability' affordance available in scaled distance-to-target information by boxers led to a diversity of emergent actions through a cascade of bifurcations in the task perceptual-motor work space. Data suggested that perceived efficiency (E) of an action changed as a function of scaled distance (D) and was correlated with the probability of occurrence of action patterns (P), exhibiting the following dependence P = P(E(D)). The implication is that probability of occurrence (P) depends on efficiency (E), which in turn depends on scaled distance (D) to the target. Accordingly, scaled distance-dependent perceived efficiency seems a viable candidate for a contextual (control) parameter to describe the nonlinear dynamics of striking actions in boxing.

Adult↗

Long-term prospective on-line real-time seizure prediction.

OBJECTIVE: Epilepsy, one of the most common neurological disorders, constitutes a unique opportunity to study the dynamics of spatiotemporal state transitions in real, complex, nonlinear dynamical systems. In this study, we evaluate the performance of a prospective on-line real-time seizure prediction algorithm in two patients from a common database. METHODS: We previously demonstrated that measures of chaos and angular frequency, estimated from electroencephalographic (EEG) signals recorded at critical sites in the cerebral cortex, progressively converge (i.e. become dynamically entrained) as the epileptic brain transits from the asymptomatic interictal state to the ictal state (seizure) (Iasemidis et al., 2001, 2002a, 2003a). This observation suggested the possibility of developing algorithms to predict seizures well ahead of their occurrences. One of the central points in those investigations was the application of optimization theory, specifically quadratic zero-one programming, for the selection of the critical cortical sites. This current study combines that observation with a dynamical entrainment detection method to prospectively predict epileptic seizures. The algorithm was tested in two patients with long-term (107.54h) and multi-seizure EEG data B and C (Lehnertz and Litt, 2004). RESULTS: Analysis from the 2 test patients resulted in the prediction of up to 91.3% of the impending 23 seizures, about 89+/-15min prior to seizure onset, with an average false warning rate of one every 8.27h and an allowable prediction horizon of 3h. CONCLUSIONS: The algorithm provides warning of impending seizures prospectively and in real time, that is, it constitutes an on-line and real-time seizure prediction scheme. SIGNIFICANCE: These results suggest that the proposed seizure prediction algorithm could be used in novel diagnostic and therapeutic applications in epileptic patients.

Brain Mapping↗

Slowly adapting type I mechanoreceptor discharge as a function of dynamic force versus dynamic displacement of glabrous skin of raccoon and squirrel monkey hand.

The effects of dynamic force and dynamic displacement on single unit discharge rate during ramp stimulation were examined in 10 raccoon and 8 squirrel monkey slowly adapting Type I (SAI) mechanoreceptive afferent fibers, all having receptive fields on glabrous skin of the hand. In all 18 cases, power function exponents were higher for effects of dynamic displacement than for effects of dynamic force on discharge frequency. Thus, these SAI mechanoreceptors are more sensitive to variations in dynamic displacement than to variations in dynamic force. This differential sensitivity may be explained by the fact that the relationship between dynamic force and dynamic displacement is, itself, nonlinear, dynamic displacement being a power function of dynamic force, with exponents less than 1.0.

Action Potentials↗

Terrestrial metapopulation dynamics: a nonlinear bioeconomic model analysis.

This paper presents a spatially explicit bioeconomic analysis of species conservation in agricultural areas. Wild species in fragmented agricultural landscapes are best approached as metapopulations consisting of a finite number of local populations. Economic analysis of species conservation in fragmented habitat needs to deal with metapopulation theory and its theoretical implications. This paper presents a spatially explicit bioeconomic model consisting of a straightforward economic land use model and an applied metapopulation model. This paper demonstrates that multiple equilibria and multiple local optima in metapopulations might lead to nonconvexities in the production possibilities set of agricultural profits and species conservation.

Agriculture↗

The statistical mechanics for an extended nonlinear epigenetic dynamics. I.

An extension of the control equations discussed by Goodwin is proposed which allows for arbitrary strong coupling and for arbitrary parallel coupling of metabolic pools and genetic loci. It is demonstrated that these generalized control equations can be put into canonical form and further that Liouville's theorem applies. In addition, it is demonstrated that after a suitable canonical transformation the resulting partition function can be solved in closed form, and this result, as well as that for the mean energy, is exhibited. Some remarks appropriate to additional extensions are presented.

Genes↗

Excited state dynamics and nonlinear absorption of a pyrazinoporphyrazine macrocycle carrying externally appended pyridine rings.

The multiphoton absorption properties of the tetrakis-2,3-[5,6-di(2-pyridyl)pyrazino]porphyrazinato(monoacquo)-Mg(II) complex [Py(8)TPyzPzMg(H(2)O)] (1) are reported and interpreted. The nonlinear optical behavior of 1 and the characterization of the excited states important for the nonlinear absorption process were studied at the pump frequency of the second harmonic generation of a Nd:YAG laser in the nanosecond time regime. It was found that complex 1 shows a very good optical limiting performance at 532 nm, which derives from two processes: (a) a reverse-saturable absorption process, which involves a triplet excited state at low intensities, and (b) a two-photon absorption process at higher intensities, which is due to the formation of the radical monoanion of 1, [Py(8)TPyzPzMg(H2O)](.-), during the photoreduction of the triplet state. The participation of a monoanion in determining the overall nonlinear absorption behavior of 1 is found, for the first time, for a tetrapyrrolic system. One can deduce that the involvement of the monoanion derives from the electron-withdrawing effect of the dipyridinopyrazino fragments externally attached to the porphyrazine core which make the reduced form of 1 easily accessible. These results suggest a modification of tetrapyrrolic systems with new nonlinear absorption properties.

Journal Article↗

Rate processes in nonlinear optical dynamics with many attractors.

Kramers' 1940 paper and its successive elaborations have extensively explored the transition rate between two stable situations, that is, in the language of system dynamics, the transition between the basins of attraction of two stable fixed point attractors. In a nonequilibrium system some of the above conditions may be violated, either because one of the two fixed points is unstable, as in the case of transient phenomena, or because both fixed points are unstable, as in the case of heteroclinic chaos, or because the attractors are more complex than fixed points, as in a chaotic dynamics where two or more strange attractors coexist. Furthermore, there is recent experimental evidence of space-time complexity consisting in the alternate or simultaneous oscillation of many modes, each one with its own (possibly chaotic) dynamics. In all the above cases, coexistence of many alternative paths implies a choice, either due to noise or self-triggered by the same interacting degrees of freedom. A review of the above phenomena in the case of nonequilibrium optical systems is here presented, with the aim of stimulating theoretical investigation on these novel rate processes.

Journal Article↗