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PubMed1994

Two-dimensional NMR studies of the flavin binding site of Desulfovibrio vulgaris flavodoxin in its three redox states.

The riboflavin 5'-monophosphate (FMN) binding site of Desulfovibrio vulgaris flavodoxin in the diamagnetic oxidized and two-electron reduced form was investigated using two-dimensional proton NMR. The NMR results are compared to existing X-ray crystallographic data. In the paramagnetic one-electron reduced redox state resonances of protons which are close to the FMN ring are strongly broadened due to the paramagnetic properties of the flavin ring. From comparison of the NMR spectra of the three redox states it could be concluded that outside the FMN binding site no structural changes occur upon reduction. Strong hydrogen bonds are observed between the N(1) and C(2) carbonyl of the isoalloxazine ring and the amide protons of D95 and C102, respectively. The amide resonances of D95 and C102 are strongly downfield shifted upon two-electron reduction, caused by the negative charge in the N(1)-C(2) carbonyl region in the two-electron reduced FMN. It is suggested that the ring current of the central pyrazine ring of the FMN molecule in the two-electron reduced flavodoxin is decreased compared to the oxidized flavodoxin. The decrease in ring current is apparently caused by the loss of aromaticity of this pyrazine moiety due to protonation of N(5). Strong hydrogen bonds between the flavin phosphate group and amide and hydroxyl protons of the apoprotein are observed. Resonances of protons involved in this hydrogen bonding network are downfield shifted up to 3.5 ppm. It is suggested that the negative charges of the dianionic FMN phosphate group are stabilized by local peptide dipoles. On reduction of the protein from the oxidized to the one-electron reduced form, a conformational change occurs in the FMN binding region. No conformational change can be observed between the one-electron and the two-electron reduced state.

Amino Acid Sequence↗

PubMed1993

Structure-activity relations of amiloride derivatives, acting as antagonists of cation binding on Na+/K(+)-ATPase.

In a search for an organic analogue of K+ or Na+ ions that binds to the cation binding sites of Na+/K(+)-ATPase with high affinity, the potency of the diuretic amiloride and its derivatives in blocking Rb+ occlusion has been tested. Although amiloride itself has a low affinity (> 200 microM), insertion of short alkyl chains in position 5 of the pyrazine ring of the molecule dramatically increased the affinity of the compound. For example, 5-(N-ethyl-N-isopropyl)amiloride (EIPA) competes with a Ki approximately 10 microM. In derivatives lacking a halogen in position 6 of the ring, a 6-fold decrease in affinity was found. Substitutions in the guanidinium moiety did not produce high affinity inhibitors of Rb+ occlusion. Several derivatives at positions 5 and 6 of the pyrazine ring were found to be strictly competitive inhibitors with respect to Rb+ ions. The highest affinity was observed around pH 8.0-8.2, and low temperature. EIPA and 5-(N-methyl-N-isobutyl)amiloride (MIBA) stabilized the E1 form of FITC1-labelled Na+/K(+)-ATPase, behaving as Na+ analogues. The present findings are similar to our previous results, showing that alkyl- and arylguanidinium derivatives are competitive Na(+)-like antagonists in cation sites. Conclusions concerning the structural features of amiloride derivatives which are necessary to produce the highest binding affinity, are being exploited in synthesis of competitive cation analogues. Derivatives with sufficiently high affinity (0.1-1 microM) will be converted to affinity and photoaffinity reagents.

Amiloride↗

PubMed2005

Utilizing the intramolecular Fukuyama-Mitsunobu reaction for a flexible synthesis of novel heterocyclic scaffolds for peptidomimetic drug design.

We report the synthesis of the novel scaffolds pyrazino[1,2-b]isoquinoline and pyrrolo[1,2-a]pyrazine displaying the somatostatin pharmacophores. Both classes of compounds contain a pyrazine heterocycle, which can be prepared in a straightforward manner utilizing an intramolecular Fukuyama-Mitsunobu reaction. As both the families derive from amino acids, they can be accessed in high optical purity.

Amino Acids↗

PubMed2000

Statistical analysis on a series of glycine antagonists.

Quantitative structure-activity relationships of two series of glycine antagonists, pyrido[2,3-b]pyrazines and pyrido[2,3-b]pyrazine N-oxides, was performed using PLS (Projection on Latent Variables) and traditional physico-chemical and topological descriptors. The effect of substitution on the heteroaromatic ring was investigated with the aim of further improving the affinity (expressed as pKi) of these derivatives towards the strychnine-insensitive glycine binding site associated with the NMDA receptor. A significant model was obtained for both series of compounds. Structure-activity implications are discussed.

Chemical Phenomena↗

PubMed2003

An overview of inhibitors of Na(+)/H(+) exchanger.

The Na(+)/H(+) exchanger (NHE) is involved in intracellular pH homeostasis of many mammalian cell types. To date seven NHE isoforms (NHE1-NHE7) have been identified. NHE1 is the most predominant isoform expressed in heart where it contributes to cardiomyocyte pH homeostasis. Although the NHE activation is essential for the restoration of physiological pH, hyperactivation of NHE1 during ischemia-reperfusion episodes disrupts the intracellular ion balance, leading to cardiac dysfunction and damage. Beside its ability to inhibit a conductive Na(+) channel and the Na(+)/Ca(++) exchanger, amiloride was the first drug described as NHE inhibitor. Double substitution of the nitrogen of the 5-amino group of amiloride gave DMA, EIPA, MIBA and HMA. Later, several acylguanidines were prepared to selectively inhibit NHE1. The replacement of the pyrazine ring of amiloride by a pyridine ring or by a phenyl increased the potency and the NHE selectivity. The simultaneous replacement of the pyrazine ring by a phenyl, of the 6-chloro by a sulfomethyl led to drugs such as HOE-694, cariporide, eniporide and BIIB-513 which also selectively inhibited NHE1. In the last decade several bicyclic guanidines were prepared: zoniporide, MS-31038, SM-20220, SM-20550, SMP-300, KB-R9032, BMS-284640, T-162559, TY-12533, S-3226 or SL-591227. Extensive pre-clinical studies indicated that NHE inhibitors afford substantial protection in different animal models of myocardial ischemia (MI) and reperfusion, but the results of clinical trials involving eniporide and cariporide were mixed.

Animals↗

PubMed2000

A spectroscopic study of the molecular interactions of harmane with pyrimidine and other diazines.

FTIR, UV-vis, steady state and time-resolved fluorescence measurements show that harmane (1-methyl-9H-pyrido/3,4-b/indole) interacts with pyrimidine and its isomers pyrazine and pyridazine in its ground and lowest singlet states. The mechanisms of interaction are dependent on both the structure of the diazine and the nature of the solvent. Thus, in a low polar solvent such as toluene, harmane forms ground state 1:1 hydrogen-bonded complexes with all the diazines. These complexes quench the fluorescence of harmane and diminish its fluorescence lifetime. Conversely, in buffered (pH 8.7) aqueous solutions, pyrimidine behaves differently from the other diazines. Thus, whereas pyrimidine only interacts with harmane in its ground state, pyrazine and pyridazine also interact in the excited state. The harmane-pyrimidine ground state interaction is an entropic controlled process. Therefore, we propose the formation of pi-pi stacked 1:1 complexes between these substrates. Association constants for the different types of complexes and quenching parameters are reported.

Harmine↗

PubMed2002

Bicyclic piperazinylbenzenesulphonamides are potent and selective 5-HT6 receptor antagonists.

The synthesis of novel 3-(octahydropyrido[1,2-a]pyrazin-2-yl)- and 3-(hexahydropyrrolo[1,2-a]pyrazin-2-yl)phenyl-2-benzo[b]thiophene sulphonamide derivatives 3, (S)-4 and (R)-4 is described. The compounds show high affinity for the 5-HT6 receptor, excellent selectivity against a range of other receptors and good brain penetration.

Drug Design↗

PubMed2001

In vivo measurement of flavour release from mixed phase gels.

Flavour release was investigated from pure gelatin, pure agarose and mixed gelatin-agarose gels, all containing 25% sucrose and flavoured with p-cymene, ethyl butyrate, pyrazine and ethanol. Gels were characterised by optical microscopy, and rheological techniques to determine phase separation, elastic modulus and melting temperature. Volatile release was measured by monitoring the four volatiles in the expired air from one individual eating the gels, using Atmospheric Pressure Chemical Ionisation-Mass Spectrometry. The release pattern of p-cymene was not affected by gel type. The release of ethanol, ethyl butyrate and pyrazine was affected to different extents by the matrix suggesting that both the properties of the volatile and the matrix determine volatile release in vivo.

Flavoring Agents↗

PubMed1977

Substrate and substrate analogue binding properties of Renilla luciferase.

Luciferase from the anthozoan coelenterate Renilla reniformis catalyzes the oxidative decarboxylation of luciferin consuming 1 mol of O2 per mol of luciferin oxidized and producing 1 mol of CO2, 1 mol of oxyluciferin, and light (lambdaB, 480 nm) with a 5.5% quantum yield. In this work we have examined the binding characteristics of luciferin, luciferin analogues, and competitive inhibitors of the luciferin-luciferase reaction. The results show that luciferin binding and orientation in the single luciferin binding site of luciferase are highly specific for and dependent upon the three group substituents of the luciferin molecule while the imidazolone-pyrazine nucleus of luciferin is not directly involved in binding. Anaerobic luciferin binding promotes a rapid concentration-dependent aggregation of luciferase which results in irreversible inactivation of the enzyme. This aggregation phenomenon is not observed upon binding of oxyluciferin, luciferyl sulfate, or luciferin analogues in which the substituent at the 2 position of the imidazolone-pyrazine ring has been substantially altered.

Animals↗

PubMed2003

A guest-induced assembly of a molecular box from methylcobaloxime and 1, 4-phenylenebisboronic acid.

The guest-induced synthesis of a molecular box from methylaquacobaloxime and 1,4-phenylenebisboronic acid, with pyrazine (pz) as guest, is described. The resulting supramolecular species was characterized by X-ray structural analysis, 1H and 13C NMR spectroscopy, and low-resolution electrospray ionization (ES) mass spectrometry. The assembly was monitored by a time dependent 1H NMR experiment, which showed that the guest thermodynamically drives the assembly of the host. The effectiveness of pyrazine in this role arises from its having both the correct geometry and a sufficiently low pKa value. Several other ditopic ligands were tested, but none led to formation of an analogous product. However, a second supramolecular species was formed in the case of ethylenediamine (en). X-ray structural analysis and 1H and 13C spectroscopy revealed that this is closely related to the first, with a phenyl side removed and the pz bridge substituted by the en bridge.

Journal Article↗

PubMed2004

Tetra-2,3-pyrazinoporphyrazines with externally appended pyridine rings. 1. Tetrakis-2,3-[5,6-di(2-pyridyl)pyrazino]porphyrazine: a new macrocycle with remarkable electron-deficient properties.

A new pyrazinoporphyrazine macrocycle carrying externally appended pyridine rings, tetrakis-2,3-[5,6-di(2-pyridyl)pyrazino]porphyrazine (hydrated), [Py(8)TPyzPzH(2)].2H(2)O, was prepared in high yield by direct cyclotetramerization of the precursor, 2,3-dicyano-5,6-di(2-pyridyl)-1,4-pyrazine, [(CN)(2)Py(2)Pyz], in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU). The single-crystal X-ray structure of [(CN)(2)Py(2)Pyz] shows a noncoplanar positioning of the pyrazine and pyridine rings in the two slightly different independent molecular units present in the crystal. UV-vis spectra of [Py(8)TPyzPzH(2)] were measured in two nondonor solvents (CHCl(3), CH(2)Cl(2)), a slightly basic solvent (pyridine), and an acidic solvent (CH(3)COOH). In all cases, the spectral changes are consistent with the occurrence of molecular aggregation and colloidal dispersions which break up with time to give clear solutions containing exclusively the monomeric form of the macrocycle, either neutral [Py(8)TPyzPzH(2)] (in CHCl(3), CH(2)Cl(2), and CH(3)COOH) or dianionic [Py(8)TPyzPz](2)(-) (in pyridine). A spectrally monitored titration of [Py(8)TPyzPzH(2)] in CH(2)Cl(2) with TBA(OH) shows the loss of two protons from the macrocyclic core and quantitative conversion of [Py(8)TPyzPzH(2)] to [Py(8)TPyzPz](2)(-). Cyclic voltammetry and thin-layer spectroelectrochemical measurements show that [Py(8)TPyzPzH(2)] is present in CH(2)Cl(2) while [Py(8)TPyzPz](2)(-) is present in pyridine, but both forms of the compound exhibit identical electrochemical behavior, consistent with a conversion of the dianion to the neutral porphyrazine in pyridine prior to electroreduction via four reversible one-electron transfer steps. No oxidations of the macrocycle are observed in either solvent containing 0.1 M tetrabuthylammonium perchlorate (TBAP). A comparison of the electrochemical behavior for [Py(8)TPyzPzH(2)] with what is reported for related phthalocyanine and porphyrazine analogues highlights the remarkable electron-accepting properties of the presently investigated free-base macrocycle.

Journal Article↗

PubMed2004

Alkaline side-coordination strategy for the design of nickel(II) and nickel(III) bis(1,2-diselenolene) complex based materials.

The deprotonated form of the pyrazine-2,3-diselenol (pds) ligand, pds(2-), reacts with Ni(II) inorganic salts to form the nickel compounds [Ni(II)(pds)(2)](nBu(4)N)(2) (1), [Ni(II)(pds)(2)]Na(2).2H(2)O (2), and [Ni(III)(pds)(2)](2)Na(2).4H(2)O (3), depending on the reaction conditions. They are characterized by NMR, EPR, UV-vis, and IR spectroscopies, elemental analysis, cyclic voltammetry, and X-ray crystallography. The crystal structure of compound 3 shows the formation of segregated stacks of Ni(pds)(2-) units, with a strong dimerization along the stacks. The stacked fashion of the crystal packing was expected since the supramolecular forces of the alkaline side coordination to the pyrazine moieties dominate, as happens in the recently reported analogous copper system [Cu(III)(pds)(2)]Na.2H(2)O. The structure of 2 further emphasizes the alkaline coordination as the dominating supramolecular event, and an orthogonal array of 2D layers is observed. The absence of alkaline cations in complex 1 is reflected in a crystal packing with isolated complex Ni(pds)(2)(2-) units. The dimerization found in the paramagnetic Ni(III) complex 3 promotes a very strong antiferromagnetic interaction, leading to a singlet ground state.

Journal Article↗

PubMed2005

Luminescence ranging from red to blue: a series of copper(I)-halide complexes having rhombic {Cu2(mu-X)2} (X = Br and I) units with N-heteroaromatic ligands.

A series of Cu(I) complexes formulated as [Cu(2)(mu-X)(2)(PPh(3))(L)(n)] were prepared with various mono- and bidentate N-heteroaromatic ligands (X = Br, I; L = 4,4'-bipyridine, pyrazine, pyrimidine, 1,5-naphthyridine, 1,6-naphthyridine, quinazoline, N,N-dimethyl-4-aminopyridine, 3-benzoylpyridine, 4-benzoylpyridine; n = 1, 2). Single-crystal structure analyses revealed that all the complexes have planar {Cu(2)X(2)} units. Whereas those with monodentate N-heteroaromatic ligands afforded discrete dinuclear complexes, bidentate ligands formed infinite chain complexes with the ligands bridging the dimeric units. The long Cu...Cu distances (2.872-3.303 A) observed in these complexes indicated no substantial interaction between the two Cu(I) ions. The complexes showed strong emission at room temperature as well as at 80 K in the solid state. The emission spectra and lifetimes in the microsecond range were measured at room temperature and at 80 K. The emissions of the complexes varied from red to blue by the systematic selection of the N-heteroaromatic ligands (lambda(em)(max): 450 nm (L = N,N-dimethyl-4-aminopyridine) to 707 nm (L = pyrazine)), and were assigned to metal-to-ligand charge-transfer (MLCT) excited states with some mixing of the halide-to-ligand (XL) CT characters. The emission energies were successfully correlated with the reduction potentials of the coordinated N-heteroaromatic ligands, which were estimated by applying a simple modification based on the calculated stabilization energies of the ligands by protonation.

Journal Article↗

PubMed1999

Intervalence Transfer at the Localized-to-Delocalized, Mixed-Valence Transition in Osmium Polypyridyl Complexes.

The mixed-valence complexes [(bpy)(2)(Cl)Os(III)(BL)Os(II)(Cl)(bpy)(2)](3+) and [(tpy)(bpy)Os(III)(BL)Os(II)(bpy)(tpy)](5+) (bpy is bipyridine; tpy is 2,2':6',2' '-terpyridine; BL is a bridging ligand, either 4,4'-bipyridine (4,4'-bpy) or pyrazine (pz)) have been prepared and studied by infrared and near-infrared measurements in different solvents. For BL = 4,4'-bpy, there is clear evidence for localized Os(II) and Os(III) oxidation states in the appearance of the expected two interconfigurational dpi --> dpi bands at Os(III) and additional, broad absorption features in the near-infrared arising from intervalence transfer (IT) transitions. For [(bpy)(2)(Cl)Os(pz)Os(Cl)(bpy)(2)](3+) and [(tpy)(bpy)Os(pz)Os(bpy)(tpy)](5+), unusually intense nu(pz) bands appear in the infrared at 1599 cm(-)(1) (epsilon = 2600 M(-)(1) cm(-)(1)) for the former and at 1594 cm(-)(1) (epsilon = 2020 M(-)(1) cm(-)(1)) for the latter. They provide an oxidation state marker and evidence for localized oxidation states. A series of bands appear in the near-infrared from 2500 to 8500 cm(-)(1) that can be assigned to a combination of interconfigurational dpi --> dpi and IT transitions. In CD(3)CN, in the mid-infrared, bands arising from nu(bpy) ring stretching modes from 1400 to 1500 cm(-)(1) are averaged for [(bpy)(2)(Cl)Os(pz)Os(Cl)(bpy)(2)](3+) or significantly perturbed for [(tpy)(bpy)Os(pz)Os(bpy)(tpy)](5+) compared to electronically isolated Os(II) and Os(III) complexes. The pyrazine-bridged complexes have properties that place them in a new class of mixed-valence molecules, Class II-III having properties associated with both Class II and Class III in the Robin and Day classification scheme. The characteristic features of this class are that oxidation states are localized because of vibrational coupling but that solvent orientational motions are uncoupled because of rapid intramolecular electron transfer.

Journal Article↗

PubMed2000

Electron paramagnetic resonance and spectroscopic characteristics of electrogenerated mixed-valent systems [(eta 5-C5Me5)M(mu-L)M(eta 5-C5Me5)]+ (M = Rh, Ir; L = 2,5-diiminopyrazines) in relation to the radicals [(eta 5-C5Me5)ClM(mu-L)MCl(eta 5-C5Me5)]+ and [(eta 5-C5Me5)M(mu-L)MCl(eta 5-C5Me5)]2+.

Electrochemical reduction of the dinuclear [(eta 5-C5Me5)ClM(mu-L)MCl(eta 5-C5Me5)]2+ ions (M = Rh, Ir; L = 2,5-bis(1-phenyliminoethyl)pyrazine (bpip) and 2,5-bis[1-(2,6-dimethylphenyl)iminoethyl]pyrazine (bxip)) proceeds via the paramagnetic intermediates [(eta 5-C5Me5)ClM(mu-L)MCl(eta 5-C5Me5)]+ (L = bpip) or [(eta 5-C5Me5)M(mu-L)MCl(eta 5-C5Me5)]2+ (L = bxip) and [(eta 5-C5Me5)M(mu-L)M(eta 5-C5Me5)]+. Whereas the first is clearly a radical species with a small g anisotropy, the chloride-free cations are distinguished by structured intervalence charge transfer (IVCT) bands in the near-infrared region and by rhombic electron paramagnetic resonance features between g = 1.9 and g = 2.3, which suggests considerable metal participation at the singly occupied MO. Alternatives for the d configuration assignment and for the role of the bisbidentate-conjugated bridging ligands will be discussed. The main difference between bpip and bxip systems is the destabilization of the chloride-containing forms through the bxip ligand for reasons of steric interference.

Journal Article↗

PubMed2001

Effect of pH and temperature on the formation of volatile compounds in cysteine/reducing sugar/starch mixtures during extrusion cooking.

Mixtures of cysteine, reducing sugar (xylose or glucose), and starch were extrusion cooked using feed pH values of 5.5, 6.5, and 7.5 and target die temperatures of 120, 150, and 180 degrees C. Volatile compounds were isolated by headspace trapping onto Tenax and analyzed by gas chromatography--mass spectrometry. Eighty and 38 compounds, respectively, were identified from extrudates prepared using glucose and xylose. Amounts of most compounds increased with temperature and pH. Aliphatic sulfur compounds, thiophenes, pyrazines, and thiazoles were the most abundant chemical classes for the glucose samples, whereas for xylose extrudates highest levels were obtained for non-sulfur-containing furans, thiophenes, sulfur-containing furans, and pyrazines. 2-Furanmethanethiol and 2-methyl-3-furanthiol were present in extrudates prepared using both sugars, but levels were higher in xylose samples. The profiles of reaction products were different from those obtained from aqueous or reduced-moisture systems based on cysteine and either glucose or ribose.

Cysteine↗

PubMed2001

Effect of pH, temperature, and moisture on the formation of volatile compounds in glycine/glucose model systems.

Mixtures of glycine, glucose, and starch were extrusion cooked using sodium hydroxide at 0, 3, and 6 g/L of extruder water feed, 18% moisture, and 120, 150, and 180 degrees C target die temperatures, giving extrudates with pH values of 5.6, 6.8, and 7.4. Freeze-dried equimolar solutions of glucose and glycine were heated either dry or after equilibration to approximately 13% moisture at 180 degrees C in a reaction-tube system designed to mimic the heating profile in an extruder. Volatile compounds were isolated onto Tenax and analyzed by gas chromatography-mass spectrometry. For the extrudates, total yields of volatiles increased with decreasing pH at 180 degrees C, reached a maximum at pH 6.8 at 150 degrees C, and increased with increasing pH at 120 degrees C. Amounts increased with temperature at all pH values. Pyrazines were the most abundant class for all sets of conditions (54-79% of total volatiles). Pyrroles, ketones, furans, oxazoles, and pyridines were also identified. Yields of volatiles from the reaction-tube samples increased by >60% in the moist system. Levels of individual classes also increased in the presence of moisture, except pyrazines, which decreased approximately 3.5-fold. Twenty-one of the compounds were common to the reaction-tube samples and the extrudates.

Cooking↗

PubMed2002

Effects of carnosine on volatile generation from Maillard reaction of ribose and cysteine.

Carnosine occurs naturally in meat and meat products in significant quantity, and it possesses strong antioxidant activity that inhibits lipid oxidation and enhances shelf life. In this study, the effects of carnosine on thermal flavor generation were investigated using the model system of cysteine and ribose, which was heated to the roasting temperature of 180 degrees C for 2 h at pH 5 and pH 8.5. The results indicated that carnosine affected volatile formation in a complex manner. Volatiles identified from the liquid phase of the reaction systems of ribose and cysteine showed that the sulfur-containing compounds such as thiophenes, thiazoles, and polysulfides were the most abundant compounds. The addition of carnosine into the reaction mixtures in general caused a reduction in contents of thiophenes and some important meaty flavor compounds such as 2-methyl-3-furanthiol, 2-furfurylthiol, and their associated dimers. On the other hand, it facilitated the generation of several important nitrogen-containing volatiles such as pyrazine, methylpyrazine, 2,6-dimethylpyrazine, and other alkyl pyrazines and thiazoles, which are known to elicit roasty and nutty flavor notes. The results suggested that carnosine acts as a nitrogenous source to facilitate the formation of nitrogen-containing compounds, possibly by degradation to form ammonia.

Antioxidants↗