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PubMed2005

Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care?

One of the keys to success of many anaerobic ecosystems is the process of syntrophic intercellular hydrogen transfer. This process facilitates the overall reaction by end-product removal, taking advantage of a wide variety of organisms that are able to use hydrogen directly as an energy source by uptake hydrogenases. Thus, the issue is not whether there are hydrogen-driven processes or communities but whether there are hydrogen-driven communities that exist and persist independently of the products of photosynthesis (so-called subsurface lithoautotrophic microbial ecosystems, or SLiMEs). It is the proof of long-term independence from photosynthesis and its products that is the most difficult issue to establish, and perhaps the most important one with regard to searching for SLiMEs both on and off our planet. Although the evidence is not yet unequivocal, a growing body of evidence supports the existence of SLiME-like communities: if they exist, the implications are immense with regard to understanding subsurface environments on Earth, looking for present day analogs of early Earth and the search for life in other worlds.

Archaea↗

PubMed2004

A framework for the integration of ecosystem and human health in public policy: two case studies with infectious agents.

Despite that a significant body of published literature exists in the complex area of interconnection among the environment, ecosystems, and human activity, relatively little attention has been paid to the integration and analysis of ecological and human health data in the form of a conceptual model. Human and ecological health protection generally have been treated as separate domains of policy, with significant differences in both the analytic methods used to characterize risks and the policies developed for risk reduction. Understanding the relationships among population growth, development, natural resource use, the environment, human health, and ecosystems is an important area of both scientific inquiry and environmental policy. The present paper focuses on the development of a conceptual model for understanding disease causation, particularly infectious disease, and the implications of such a model for public policy. The conceptual model incorporates ecological and human health risk assessment information applied to case studies of two infectious diseases. This article takes an initial step toward formalizing the conceptual model so that research and assessment procedures can be developed.

Agriculture↗

PubMed2001

Derelict fishing gear in the northwestern Hawaiian Islands: diving surveys and debris removal in 1999 confirm threat to coral reef ecosystems.

Marine debris threatens Northwestern Hawaiian Islands' (NWHI) coral reef ecosystems. Debris, a contaminant, entangles and kills endangered Hawaiian monk seals (Monachus schauinslandi), coral, and other wildlife. We describe a novel multi-agency effort using divers to systematically survey and remove derelict fishing gear from two NWHI in 1999. 14 t of derelict fishing gear were removed and debris distribution, density, type and fouling level documented at Lisianski Island and Pearl and Hermes Atoll. Reef debris density ranged from 3.4 to 62.2 items/km2. Trawl netting was the most frequent debris type encountered (88%) and represented the greatest debris component recovered by weight (35%), followed by monofilament gillnet (34%), and maritime line (23%). Most debris recovered, 72%, had light or no fouling, suggesting debris may have short oceanic circulation histories. Our study demonstrates that derelict fishing gear poses a persistent threat to the coral reef ecosystems of the Hawaiian Archipelago.

Animals↗

PubMed2002

Improvement of the sediment ecosystem following diversion of an intertidal sewage outfall at the Fraser river estuary, Canada, with emphasis on Corophium salmonis (Amphipoda).

Primary treated sewage effluent from the city of Vancouver, Canada was deposited directly onto the intertidal ecosystem of Sturgeon bank, Fraser river estuary between 1962 and 1988. In response to the degraded sediment conditions an azoic zone developed near the discharge outfall. Effluent discharges into the intertidal zone were almost completely stopped in 1988 with the construction of a submerged outfall. Our studies, conducted between 1994 and 1996, showed considerable improvement in the environment of the mudflat ecosystem, including increased dissolved oxygen, decreased sediment chlorophyll, decreased organic material in the sediment, reduced heavy metals in surficial sediment and increased grain size. The amphipod Corophium salmonis, important in the food web for juvenile salmon and other fish species, recolonized the previously azoic location. At reference stations, C. salmonis density was similar to that observed in previous surveys two decades earlier. Our data strongly suggest that improvement or sediment conditions near the former sewage outfall was a major factor enabling colonization by C. salmonis.

Amphipoda↗

PubMed2003

Biological invasions as a component of global change in stressed marine ecosystems.

Biological invasions in marine environment are the lesser known aspect of global change. However, recent events which occurred in the Mediterranean Sea demonstrate that they represent a serious ecological and economical menace leading to biodiversity loss, ecosystem unbalancing, fishery and tourism impairment. In this paper we review marine bioinvasions using examples taken from the Mediterranean/Black Sea region. Particular attention is given to the environmental status of the receiving area as a fundamental pre-requisite for the colonisation success of alien species. The spread of the tropical algae belonging to the genus Caulerpa in the northwestern basin of the Mediterranean Sea has been facilitated by pre-existing conditions of instability of the Posidonia oceanica endemic ecosystem in relation to stress of both natural and anthropogenic origin. Human interventions caused long-term modification in the Black Sea environment, preparing a fertile ground for mass bioinvasion of aquatic nuisance species which, in some cases, altered the original equilibrium of the entire basin. Finally, the Venice lagoon is presented as the third example of an environment subjected to high propagule pressure and anthropogenic forcing and bearing the higher "diversity" of non-indigenous species compared to the other Mediterranean lagoons. Stressed environments are easily colonised by alien species; understanding the links between human and natural disturbance and massive development of non-indigenous species will help prevent marine bioinvasions, that are already favoured by global oceanic trade.

Animals↗

PubMed2003

Emergence of a complex and stable network in a model ecosystem with extinction and mutation.

We propose a minimal model of the dynamics of diversity-replicator equations with extinction, invasion and mutation. We numerically study the behavior of this simple model and show that it displays completely different behavior from the conventional replicator equation and the generalized Lotka-Volterra equation. We reach several significant conclusions as follows: (1) a complex ecosystem can emerge when mutants with respect to species-specific interaction are introduced; (2) such an ecosystem possesses strong resistance to invasion; (3) a typical fixation process of mutants is realized through the rapid growth of a group of mutualistic mutants with higher fitness than majority species; (4) a hierarchical taxonomic structure (like family-genus-species) emerges; and (5) the relative abundance of species exhibits a typical pattern widely observed in nature. Several implications of these results are discussed in connection with the relationship of the present model to the generalized Lotka-Volterra equation.

Ecosystem↗

PubMed2001

An object-oriented framework for dynamic ecosystem modeling: application for integrated risk assessment.

Ecological risk assessment requires the integration of a wide range of data on anthropogenic processes, ecological processes and on processes related to environmental fate and transport. It is a major challenge to assemble a simulation system that can successfully capture the dynamics of complex ecological systems and an even more serious challenge to be able to adapt such a simulation to shifting and expanding analytical requirements and contexts. The dynamic information architecture system (DIAS) is a flexible, extensible, object-based framework for developing and maintaining complex simulations. DIAS supports simulations in which the real-world entities that make up ecological systems are represented as software 'entity objects'. The object-oriented integrated dynamic landscape analysis and modeling system (OO-IDLAMS) provides a good example of how DIAS has been used to build a suite of models for the purpose of assessing the ecological impacts of military land use and land management practices. OO-IDLAMS is a prototype conservation modeling suite that provides military environmental managers and decision-makers with a strategic, integrated and adaptive approach to natural resources planning and ecosystem management. The OO-IDLAMS prototype used Fort Riley, Kansas as a case study to demonstrate DIAS' capabilities to offer flexibility, interprocess dynamics and cost-effective reuse of code for ecosystem modeling and simulation. DIAS can also readily lend itself to other applications in ecological risk assessment. It has great potential for the integration of ecological models (associated with biological uptake and effects) with environmental fate and transport models. A DIAS ecological risk assessment application could be used to predict the magnitude and extent of ecological risks and evaluate remedy effectiveness in a timely and cost-effective manner.

Animals↗

PubMed2002

Lead within ecosystems on metalliferous mine tailings in Wales and Ireland.

A comparative study of the concentrations of lead in ecosystems developed on metalliferous mine tailings was undertaken. Mine soils, vegetation, ground-dwelling invertebrates and Apodemus sylvaticus from nine abandoned mines in Wales and a modern Irish mine site were sampled in order to evaluate and compare exposure risks to wildlife. The mine sites had a wide range of relatively high concentrations of total lead in their tailings (from 1058 to 46,630 mg kg(-1)) but the extractable lead fractions were extremely variable and not clearly related or proportional to the total values. The high soil concentrations were reflected in vegetation collected from most of the sites with the exception of the modern mine, but there was no statistical relationship, on a site basis, between available soil lead and that in plant leaf samples. The highest plant concentrations were found in litter, which in all but one of the Welsh sites exceeded the threshold guideline value of 150 mg kg(-1). Food-chain transfer was shown by high concentrations of lead in invertebrates and A. sylvaticus from the abandoned Welsh mines. A highly significant relationship existed between lead in grass and the grasshopper, Chorthippus brunneus. Adverse effects on soil invertebrates, essential to the decomposition processes and cycling of essential nutrients, were identified as probably the major obstacle to natural ecosystem development on the abandoned Welsh sites. Toxicological risk of lead to the small mammals from the Welsh sites, but not the modern Irish tailings, is indicated given the high lead concentrations in dietary items and the resultant residues in kidney with some evidence of renal oedema in animals from two sites. The absence of a significant relationship between the estimated dietary lead concentration. calculated on a site basis, and the total body concentration in A. sylvaticus, was attributed, in part, to the large size of the home range and the partial feeding of individual animals off the contaminated mine site.

Animals↗

PubMed2004

A comparison of organic contaminants in two high Arctic lake ecosystems, Bjørnøya (Bear Island), Norway.

Lake Ellasjøen and Lake Øyangen are two high Arctic lake ecosystem located on the island Bjørnøya (74 degrees 30' N, 19 degrees 00' E) in the Barents Sea. High levels of persistent organic pollutants (POPs), especially PCB and p,p'-DDE, were found in sediment and biota from Lake Ellasjøen while levels were several times lower in Lake Øyangen. Stable isotope signatures (delta15N) in comparable organisms (e.g. zooplankton, Arctic char) collected from both the lakes were also significantly different. The values of delta15N were 6-10 per thousand higher in the organisms from Ellasjøen than from Øyangen. In both Ellasjøen and Øyangen, a statistically significant correlation (P<0.05) was found between the levels of PCB and DDT, and delta15N values in organisms indicating enhanced bioaccumulation for higher trophical level lake organisms. As the lakes on Bjørnøya are remote, more than 500 km from any known point source, the presence of POPs is most likely the result of long-range transport of contaminants to the area. The observed higher contaminant concentrations associated with the Ellasjøen ecosystem is attributed to two factors. Ellasjøen is located in the southern, mountainous part of Bjørnøya and it is likely that this area receives more precipitation, and thereby more airborne contaminants, than the flatter areas further north on the island (i.e. the area around Øyangen). In addition, higher delta15N-levels in organisms from Ellasjøen as compared to Øyangen indicate the input of guano from seabirds using the lake as a resting area as an additional source of POPs to Ellasjøen.

Animals↗

PubMed1998

Relative risks of transformation products of pesticides for aquatic ecosystems.

In this study, the availability of physico-chemical and ecotoxicological information on 78 transformation products for 20 regularly used pesticides in the open literature is evaluated. Based on this information, it is attempted to predict the relative risk for the aquatic environment of each transformation product in comparison to its parent pesticide. It is concluded that for the 78 transformation products selected, the data set on physico-chemical and ecotoxicological behaviour is not very large. Measured log Kow values and other physico-chemical properties are known for only 30-40% of the selected transformation products. The overall reliability of the collected physico-chemical values is considered to be moderate to slight, while for the ecotoxicological data set, reliability is considered to be sufficient. In many cases, there is a need for more information especially on the persistency and no-observed-effect concentrations of the pesticide's transformation products. In general, over 50% of the transformation products of triazines, carbamates and phenoxypropionic acids pose, in theory, a similar to higher risk than their parent pesticide, while over 50% of the transformation products of synthetic pyrethroids, organophosporous pesticides and dithiocarbamates probably pose less risk. High risk was expected for products with high accumulation or persistency in sediment and/or high toxicity together with considerable bioaccumulation (potential) or relatively high concentrations or persistency in water. A generalization of the joint features that caused an increased risk for ecosystems could not be made for most pesticide classes. Exceptions are the synthetic pyrethroids, for which transformation products with a similar or even higher log Kow than the parent pesticide caused an increased potential risk, while for the carbamates the presence of the carbamate group in the transformation product was the joint characteristic of chemicals with predicted increased risk. For three transformation products, monitoring data based on concentrations measured in surface water in The Netherlands were compared with maximum permissible concentrations. This comparison indicated that two of these compounds pose a potential risk of adverse effects in the field situation in Dutch aquatic ecosystems. For all other transformation products, the potential risk in the field situation could not be established because of the absence of monitoring data.

Animals↗

PubMed1998

Indicators of human health in ecosystems: what do we measure?

Increasingly, scientists are being called upon to assist in the development of indicators for monitoring ecosystem health. For human health indicators, they may draw on environmental exposure, human morbidity/mortality or well-being and sustainability approaches. To improve the rigour of indicators, we propose six scientific criteria for indicator selection: (1) data availability, suitability and representativeness (of populations), (2) indicator validity (face, construct, predictive and convergent) and reliability; (3) indicator responsiveness to change; (4) indicator desegregation capability (across personal and community characteristics); (5) indicator comparability (across populations and jurisdictions); and (6) indicator representativeness (across important dimensions of concern). We comment on our current capacity to adhere to such criteria with examples of measures of environmental exposure, human health and sustainability. We recognize the considerable work still required on documenting environment-human health relationships and on monitoring potential indicators in similar ways over time. Yet we argue that such work is essential in order for science to inform policy decisions which affect the health of ecosystems and human health.

Biomarkers↗

PubMed1999

Spatial and temporal trends of contaminants in Canadian Arctic freshwater and terrestrial ecosystems: a review.

The state of knowledge of contaminants in Canadian Arctic biota of the freshwater and terrestrial ecosystems has advanced enormously since the publication of the first major reviews by Lockhart et al. and Thomas et al. in The Science of the Total Environment in 1992. The most significant gains are new knowledge of spatial trends of organochlorines and heavy metal contaminants in terrestrial animals, such as caribou and mink, and in waterfowl, where no information was previously available. Spatial trends in freshwater fish have been broadened, especially in the Yukon, where contaminant measurements of, for example, organochlorines were previously non-existent. A review of contaminants data for fish from the Northwest Territories, Yukon and northern Quebec showed mercury as the one contaminant which consistently exceeds guideline limits for subsistence consumption or commercial sale. Lake trout and northern pike in the Canadian Shield lakes of the Northwest Territories and northern Quebec generally had the most elevated levels. Levels of other heavy metals were generally not elevated in fish. Toxaphene was the major organochlorine contaminant in all fish analyzed. The concentrations of organochlorine contaminants in fish appear to be a function not only of trophic level but of other aspects of the lake ecosystem. Among Arctic terrestrial mammals, PCBs and cadmium were the most prominent contaminants in the species analyzed. Relatively high levels (10-60 micrograms g-1) of cadmium were observed in kidney and liver of caribou from the Yukon, the Northwest Territories and northern Quebec, with concentrations in western herds being higher than in those from the east. For the organochlorine contaminants, a west to east increase in zigma PCBs, HCB and zigma HCH was found in caribou, probably as a result of the predominant west to east/north-east atmospheric circulation pattern which delivers these contaminants from industrialized regions of central and eastern North America to the Arctic via long-range atmospheric transport. Radiocesium contamination of lichens and caribou has continued to decrease. Significant contamination by PCBs and lead of soils and vascular plants was observed in the immediate vicinity and within a 20-km radius of DEW line sites in the Canadian Arctic. There was also evidence for transfer of PCBs from plants to lemmings. There was no evidence, however, that large mammals such as caribou living in the general area of the DEW line sites had elevated levels of PCBs. There is very limited temporal trend information for most contaminants in biota of Arctic terrestrial and freshwater environments.

Animals↗

PubMed1999

Effect of dumping and cleaning activities on the aquatic ecosystems of the Guadiamar River following a toxic flood.

The main aim of the study was to document the recovery of the aquatic ecosystem after the release of toxic mining waste in the Guadiamar River Basin (Sevilla, SW Spain) in April 1998. Samples of water, plankton, periphyton and macroinvertebrates were taken once a month at nine sampling stations (six affected by the toxic release and three for control). Water hardness and pH recovered in a few weeks and did not change significantly thereafter in the river or in the marsh stations. Only the Agrio River (the tributary that received the initial waste dump) had a low pH (3-5) throughout the study period. High ammonia contents (up to 300 microM) were measured at two sampling stations due to sewage and oil mill pollution. Eutrophication was also common at most of the stations, including one reference site. The planktonic community did not differ substantially between reference and affected stations. On all occasions the small phytoplankton and zooplankton (rotifers) were dominant. Compared with the reference station, chlorophyll a in the riverine area increased, especially in the sewage-affected stations, while in the marsh area, no significant differences were found between affected and reference stations. After 6 months of cleaning operations, in November 1998 the macroinvertebrate community of the river was composed mainly of species of short life cycles typical of ponds (Heteroptera, Coleoptera and Odonata), while typical riverine species found at the upstream control station had not recolonized the river due to the transformation of the river into a series of artificial ponds constructed as sediment traps. An analysis of variance showed significantly higher values (P < 0.05) for all heavy metals analysed (Zn, Cu, Pb, As, Cd, Sb, Tl) in plankton and macroinvertebrate communities from impacted sites. Values found in invertebrates were highly variable, with a mean concentration of the most abundant metals, Zn and Cu, between two and three times those found in unpolluted areas. Values for As were up to five times higher while Pb, Sb and Tl showed up to 10-fold increases. At the affected stations, the metal concentrations found in biofilms, plankton and particulate material were more than five times greater than those in invertebrates. The slow recovery of the aquatic ecosystem clearly reflected the impact of the metal discharge and the subsequent cleaning activities following the mine spill, as well as the sewage inputs at two of the stations studied.

Accidents, Occupational↗

PubMed2000

Biotic indices based on soil nematode communities for assessing soil quality in terrestrial ecosystems.

Nematode communities offer several advantages for assessing the quality of soils. Diversity and maturity indices as well as trophic structure defining parameters based on the composition of soil nematode communities have been used to detect various kinds of man-induced disturbances and monitor ecological recovery. In the present paper we examined the response of these indices in herbaceous Mediterranean ecosystems. Incipient soils, which were developed on the top of waste dumping sites were compared with agricultural soils under fallow. Grasslands and old-fields were considered as reference systems. Either diversity or maturity indices were shown to be very sensitive to changes in soil system caused by waste dumping. However, they were less useful for the categorisation of perturbation in agroecosystems. Trophic composition related parameters were more meaningful for this aim. Plant parasite index (PPI) may be a good generic indicator of recovery processes after perturbation in these annual herbaceous ecosystems.

Animals↗

PubMedDate not supplied

Recovery of polluted ecosystems: the case for long-term studies.

Recovery of marine ecosystems from pollution has tended to receive less attention than the study of new or continuing impacts, but such studies are important in charting recovery from acute incidents and following legislation to deal with chronic contamination. Recovery is inevitably a long-term process, and where such studies have been made they are often too short-lived. Interest quickly wanes following an acute incident and governmental bodies rapidly switch to new legislative priorities for chronic inputs. We review three case studies: recovery of dogwhelk populations after local extinction by tributyl tin leachates from anti-fouling paints; recovery of rocky shore communities from oil spills; and recovery of estuarine ecosystems from industrial and urban development. We then make some generalisations about recovery processes before making a plea for long-term studies of polluted areas.

Animals↗

PubMed2003

Biotransference and biomagnification of selenium copper, cadmium, zinc, arsenic and lead in a temperate seagrass ecosystem from Lake Macquarie Estuary, NSW, Australia.

In this study the biotransference of selenium copper, cadmium, zinc, arsenic and lead was measured in a contaminated seagrass ecosystem in Lake Macquarie, NSW, Australia, to determine if biomagnification of these trace metals is occurring and if they reach concentrations that pose a threat to the resident organisms or human consumers. Selenium was found to biomagnify, exceeding maximum permitted concentrations for human consumption within carnivorous fish tissue, the highest trophic level examined. Selenium concentrations measured within carnivorous fish were also above those shown to elicit sub-lethal effects in freshwater fish. As comparisons are made to selenium concentrations known to effect freshwater fish, inferences must be made with caution. There was no evidence of copper, cadmium, zinc or lead biomagnification within the food web examined. Copper, cadmium, zinc and lead concentrations were below concentrations shown to elicit adverse responses in biota. Copper concentrations within crustaceans M. bennettae and P. palagicus were found to exceed maximum permitted concentrations for human consumption. It is likely that copper concentrations within these species were accumulated due to the essential nature of this trace metal for many species of molluscs and crustaceans. Arsenic showed some evidence of biomagnification. Total arsenic concentrations are similar to those found in other uncontaminated marine ecosystems, thus arsenic concentrations are unlikely to cause adverse effects to aquatic organisms. Inorganic arsenic concentrations are below maximum permitted concentrations for human consumption.

Animals↗

PubMed2001

DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems.

Culture-independent molecular techniques are now available to study microbial ecosystems. They are opening interesting perspectives to problems related to composition and population dynamics of microbial communities in various environmental niches (e.g., soil, water) and foods. In fermented food products, estimates of true microbial diversity is often difficult chiefly on account of the inability to cultivate most of the viable bacteria. The increasing knowledge of gene sequences and the concomitant development of new culture-independent molecular techniques are providing new and effective tools to compare the diversity of microbial communities and to monitor population dynamics in minimally disturbed samples. In this review, recent advances in these techniques are reported. Possible applications to food-associated microbial ecosystems are emphasised.

Bacteria↗

PubMed2002

Net carbon flux from agricultural ecosystems: methodology for full carbon cycle analyses.

Agricultural ecosystems have the potential to sequester carbon in soils by altering agricultural management practices (i.e. tillage practice, cover crops, and crop rotation) and using agricultural inputs (i.e. fertilizers and irrigation) more efficiently. Changes in agricultural practices can also cause changes in CO2 emissions associated with these practices. In order to account for changes in net CO2 emissions, and thereby estimate the overall impact of carbon sequestration initiatives on the atmospheric CO2 pool, we use a methodology for full carbon cycle analysis of agricultural ecosystems. The analysis accounts for changes in carbon sequestration and emission rates with time, and results in values representing a change in net carbon flux. Comparison among values of net carbon flux for two or more systems, using the initial system as a baseline value, results in a value for relative net carbon flux. Some results from using the full carbon cycle methodology, along with US national average values for agricultural inputs, indicate that the net carbon flux averaged over all crops following conversion from conventional tillage to no-till is -189 kg C ha(-1) year(-1) (a negative value indicates net transfer of carbon from the atmosphere). The relative net carbon flux, using conventional tillage as the baseline, is -371 kg C ha(-1) year(-1), which represents the total atmospheric CO2 reduction caused by changing tillage practices. The methodology used here illustrates the importance of (1) delineating system boundaries, (2) including CO2 emissions associated with sequestration initiatives in the accounting process, and (3) comparing the new management practices associated with sequestration initiatives with the original management practices to obtain the true impact of sequestration projects on the atmospheric CO2 pool.

Agriculture↗