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Results for “Spatial pattern formation”

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At least 613 records · Page 34Linked to original sources

PubMed2000

Progressive segregation of unmyelinated axons in peripheral nerves, myelin alterations in the CNS, and cyst formation in the kidneys of myelin and lymphocyte protein-overexpressing mice.

Myelin and lymphocyte protein (MAL) is a putative tetraspan proteolipid that is highly expressed by Schwann cells and oligodendrocytes as a component of compact myelin. Outside of the nervous system, MAL is found in apical membranes of epithelial cells, mainly in the kidney and stomach. Because MAL is associated with glycosphingolipids, it is thought to be involved in the organization, transport, and maintenance of glycosphingolipid-enriched membrane microdomains. In this report, we describe the generation and analysis of transgenic mice with increased MAL gene dosage. Immunohistochemical analysis revealed that the localization of MAL overexpression in the transgenic animals corresponded closely to the MAL expression pattern observed in wildtype animals, indicating correct spatial regulation of the transgene. Phenotypically, MAL overexpression led to progressive dissociation of unmyelinated axons from bundles in the PNS, a tendency to hypomyelination and aberrant myelin formation in the CNS, and the formation of large cysts in the tubular region of the kidney. Thus, increased expression of MAL appears to be deleterious to membranous structures in the affected tissues, indicating a requirement for tight control of endogenous MAL expression in Schwann cells, oligodendrocytes, and kidney epithelial cells.

Abnormalities, Multiple↗

PubMed1991

Spatially restricted expression of a member of a new family of murine Distal-less homeobox genes in the developing forebrain.

The homeobox genes of Drosophila perform key functions in embryonic pattern formation, and their vertebrate counterparts may play similar developmental roles. Using polymerase chain reaction technology, we have identified four murine homologs of the Drosophila Distal-less homeobox gene that are expressed in midgestation embryos. The homeodomains encoded by these genes vary considerably from other known homeodomain sequences and represent a new family of vertebrate homeobox genes. We isolated a cDNA for one of these genes (Dlx-2) and studied its expression by in situ hybridization from 8.5 days postcoitum (pc) until postnatal day 1. Dlx-2 shows a restricted pattern of expression in the ventral forebrain, extending from the olfactory bulb to the ventral diencephalon. This domain of expression may delineate an ontogenetically defined subdivision within the forebrain. The murine Distal-less genes are the first homeobox genes described whose expression in the central nervous system is exclusively restricted to the forebrain. Thus, the Distal-less genes may contribute missing positional cues not provided by the previously identified vertebrate homeobox genes.

Amino Acid Sequence↗

PubMed1997

Experimentally induced retinal projections to the ferret auditory thalamus: development of clustered eye-specific patterns in a novel target.

We have examined the relative role of afferents and targets in pattern formation using a novel preparation, in which retinal projections in ferrets are induced to innervate the medial geniculate nucleus (MGN). We find that retinal projections to the MGN are arranged in scattered clusters. Clusters arising from the ipsilateral eye are frequently adjacent to, but spatially segregated from, clusters arising from the contralateral eye. Both clustering and eye-specific segregation in the MGN arise as a refinement of initially diffuse and overlapped projections. The shape, size, and orientation of retinal terminal clusters in the MGN closely match those of relay cell dendrites arrayed within fibrodendritic laminae in the MGN. We conclude that specific aspects of a projection system are regulated by afferents and others by targets. Clustering of retinal projections within the MGN and eye-specific segregation involve progressive remodeling of retinal axon arbors, over a time period that closely parallels pattern formation by retinal afferents within their normal target, the lateral geniculate nucleus (LGN). Thus, afferent-driven mechanisms are implicated in these events. However, the termination zones are aligned within the normal cellular organization of the MGN, which does not differentiate into eye-specific cell layers similar to the LGN. Thus, target-driven mechanisms are implicated in lamina formation and cellular differentiation.

Afferent Pathways↗

PubMed1976

Nature and origin of patterns of changes in cell shape in embryos.

Spatial patterns of the future elongation of cells exist in the early embryo. In the newt, such a pattern of changes of cell shape contributes to the formation of the neural plate. Regardless of where neural plate cells are transplanted, they change shape as prescribed by the pattern. Embryonic induction has a role in establishing this pattern.

Animals↗

PubMed2002

Traveling fronts of copper deposition.

We report the experimental observation of traveling fronts during the electroless deposition of copper on passive steel substrates. The low-carbon steel samples are passivated in nitric acid prior to the plating experiment, thus creating a thin, protective oxide layer on the steel surface. The deposition experiments are carried out from slightly acidic (pH 3.2) copper sulfate solution and copper nitrate solution with the latter showing front propagation only in the presence of chloride ions. For up to 30 s, fronts propagate with constant velocities in the range from 0.5 to 5 mm/s depending on the experimental conditions. This phase of constant-speed propagation gives way to accelerating fronts and very rapid, spatially unstructured deposition. Front-mediated plating is observed over a wide range of cupric ion concentration and constitutes a striking and unexpected example for pattern formation in electrochemical systems.

Copper↗

PubMed2006

Thermal imaging of cucumber leaves affected by downy mildew and environmental conditions.

Pathogenesis of Pseudoperonospora cubensis causing downy mildew of cucumber resulted in changes in the metabolic processes within cucumber leaves including the transpiration rate. Due to the negative correlation between transpiration rate and leaf temperature, digital infrared thermography permitted a non-invasive monitoring and an indirect visualization of downy mildew development. Depending on the stage of pathogenesis and the topology of chloroses and necroses, infection resulted in a typical temperature pattern. Spatial heterogeneity of the leaf temperature could be quantified by the maximum temperature difference (MTD) within a leaf. The MTD increased during pathogenesis with the formation of necrotic tissue and was related to disease severity as described by linear and quadratic regression curves. Under controlled conditions, changes in temperature of infected leaves allowed the discrimination between healthy and infected areas in thermograms, even before visible symptoms of downy mildew appeared. Environmental conditions during thermographic measurement, in particular air temperature and humidity, as well as water content and age of the leaf influenced the temperature of its surface. Conditions enhancing the transpiration rate facilitated the detection of changes in leaf temperature of infected leaves at early stages of infection. As modified by environmental conditions, MTD alone is not suitable for the quantification of downy mildew severity in the field.

Cucumis sativus↗

PubMed1994

Morphogenetic Rescue of Rhizobium meliloti Nodulation Mutants by trans-Zeatin Secretion.

The development of nitrogen-fixing nodules is induced on the roots of legume host plants by Rhizobium bacteria. We employed a novel strategy to probe the underlying mechanism of nodule morphogenesis in alfalfa roots using pTZS, a broad host range plasmid carrying a constitutive trans-zeatin secretion (tzs) gene from Agrobacterium tumefaciens T37. This plasmid suppressed the Nod- phenotype of Rhizobium nodulation mutants such that mutants harboring pTZS stimulated the formation of nodulelike structures. Alfalfa roots formed more or fewer of these nodules according to both the nitrogen content of the environment and the position along the root at which the pTZS+ bacteria were applied, which parallels the physiological and developmental regulation of true Rhizobium nodule formation. This plasmid also conferred on Escherichia coli cells the ability to induce root cortical cell mitoses. Both the pattern of induced cell divisions and the spatially restricted expression of an alfalfa nodule-specific marker gene (MsENOD2) in pTZS-induced nodules support the conclusion that localized cytokinin production produces a phenocopy of nodule morphogenesis.

Journal Article↗

PubMed1995

Disruption of the mouse MRF4 gene identifies multiple waves of myogenesis in the myotome.

MRF4 (herculin/Myf-6) is one of the four member MyoD family of transcription factors identified by their ability to enforce skeletal muscle differentiation upon a wide variety of nonmuscle cell types. In this study the mouse germline MRF4 gene was disrupted by targeted recombination. Animals homozygous for the MRF4bh1 allele, a deletion of the functionally essential bHLH domain, displayed defective axial myogenesis and rib pattern formation, and they died at birth. Differences in somitogenesis between homozygous MRF4bh1 embryos and their wild-type littermates provided evidence for three distinct myogenic regulatory programs (My1-My3) in the somite, which correlate temporally and spatially with three waves of cellular recruitment to the expanding myotome. The first program (My1), marked initially by Myf-5 expression and followed by myogenin, began on schedule in the MRF4bh1/bh1 embryos at day 8 post coitum (E8). A second program (My2) was highly deficient in homozygous mutant MRF4 embryos, and normal expansion of the myotome failed. Moreover, expression of downstream muscle-specific genes, including FGF-6, which is a candidate regulator of inductive interactions, did not occur normally. The onset of MyoD expression around E10.5 in wild-type embryos marks a third myotomal program (My3), the execution of which was somewhat delayed in MRF4 mutant embryos but ultimately led to extensive myogenesis in the trunk. By E15 it appeared to have largely compensated for the defective My2 program in MRF4 mutants. Homozygous MRF4bh1 animals also showed improper rib pattern formation perhaps due to the absence of signals from cells expressing the My2 program. Finally, a later and relatively mild phenotype was detected in intercostal muscles of newborn animals.

Animals↗

PubMed2005

Noise-induced pattern formation in a semiconductor nanostructure.

We investigate the influence of noise upon the dynamics of the current density distribution in a model of a semiconductor nanostructure, namely, a double barrier resonant tunneling diode. We fix the parameters of the device below the Hopf bifurcation, where the only stable state of the system is a spatially inhomogeneous "filamentary" steady state. We show that the addition of weak Gaussian white noise to the system gives rise to spatially inhomogeneous oscillations that can be quite coherent. As the noise intensity grows, the oscillations tend to become more and more spatially homogeneous, while simultaneously the temporal correlation of the oscillations decreases. Thus, while on one hand noise destroys temporal coherence, on the other hand it enhances the spatial coherence of the current density pattern.

Journal Article↗

PubMed1995

Developmental regulation of troponin I isoform genes in striated muscles of transgenic mice.

The differentiation and diversification of striated muscle is a complex process involving numerous temporal and spatial alterations in the pattern of contractile protein isoform gene expression. In order to gain insight into the regulation of contractile protein isoform changes during skeletal and cardiac muscle formation, the expression of a transgene comprising a chloramphenicol acetyltransferase (CAT) reporter gene linked with sequences from -4200 to +12 of the human slow skeletal troponin I (TnIs) gene, and all three endogenous mouse troponin I (TnI) isoform genes, was investigated in embryonic, neonatal, and postnatal mice. The -4200 TnIsCAT transgene was properly activated in the limb and trunk skeletal muscle primordia and the early embryonic atrium and ventricle of the heart. Along with the endogenous mouse TnIs gene, expression of the CAT transgene began to segregate into the presumptive slow-twitch myofibers at late fetal stages and expression declined in the neonatal and postnatal heart except for the conductive tissues, in which expression persisted into adulthood. However, expression of the CAT transgene during development did not completely follow the endogenous mouse TnIs gene. The expression of the CAT transgene was aberrantly low in the embryonic cardiac outflow tract and the ventricles of the fetal heart. In addition to its expression in striated muscles, the transgene was expressed aberrantly in the primordial axial skeleton. We conclude that the upstream sequences from the human TnIs gene contain sufficient regulatory information to confer appropriate transgene expression during the early differentiation of skeletal muscles and during the establishment of fiber type upon the maturation of myofibers. However, additional regulatory elements are likely to be required for correct temporal and spatial regulation in the heart and somitic mesoderm during development. In vitro DNA transfection of cultured skeletal and cardiac muscle cells identified a cell type-specific enhancer element within the first intron of the TnIs gene whose absence in the transgene may account for the aberrant expression observed in vivo. In addition, we provide the first evidence that the fast-twitch skeletal muscle isoform of troponin I, TnIf, is transiently expressed during early cardiac muscle development.

Animals↗

PubMed1965

THE MECHANISM OF DISCHARGE PATTERN FORMATION IN CRAYFISH INTERNEURONS.

Excitatory and inhibitory processes which result in the generation of output impulses were analyzed in single crayfish interneurons by using intracellular recording and membrane polarizing techniques. Individual spikes which are initiated orthodromically in axon branches summate temporally and spatially to generate a main axon spike; temporally dispersed branch spikes often pace repetitive discharge of the main axon. Hyperpolarizing IPSP's sometimes suppress axonal discharge to most of these inputs, but in other cases may interact selectively with some of them. The IPSP's reverse their polarity at a hyperpolarized level of membrane potential; they sometimes exhibit two discrete time courses indicating two different input sources. Outward direct current at the main axon near branches causes repetitive discharges which may last, with optimal current intensities, for 1 to 15 seconds. The relation of discharge frequency to current intensity is linear for an early spike interval, but above 100 to 200 impulses/sec. it begins to show saturation. In one unit the current-frequency curve exhibited two linear portions, suggesting the presence of two spike-generating sites in the axon. Current threshold measurements, using test stimuli of different durations, showed that both accommodation and "early" or "residual" refractoriness contribute to the determination of discharge rate at different frequencies.

Animals↗

PubMed2003

[Diversity and distribution of crustaceans and echinoderms and their relation with sedimentation levels in coral reefs].

Seven reef formations were studied in South Caicos, Turks & Caicos, to determine the species richness, patterns of diversity and patterns of distribution of crustaceans and echinoderms, and to evaluate the relationship between these parameters and the degree of sedimentation of the different sites. The reefs showed a gradient from a high sedimentation level, almost totally covered by algae, to places with no sediment particles deposited over the corals. Sites were classified as with high, low or null sedimentation, and species richness, abundance, diversity, spatial distribution of species and similarity among sites were estimated. No unique pattern was found: for crustaceans as well as for echinoderms, the site with the highest diversity value and high equitability, presumably associated to the environmental heterogeneity of this reef formation, showed null sedimentation and an uniform and random pattern of distribution, crustaceans and echinoderms respectively. The two sites with the lowest diversity for both animal groups, although with different sedimentation levels, showed the lowest equitability value and were the only sites with an aggregated pattern of distribution. The next sites in diversity for crustaceans were those with high sedimentation, probably because most species present inhabit empty conchs, in the sediment, or among seagrass. For the echinoderms, on the contrary, the intermediate sites in diversity had low sedimentation; the habitat requirements for these species (inside sponges, over the corals or among rocks) may have determined this result. The sites with lowest diversity had high sedimentation levels. In these, crustaceans showed the lowest equitability values and an aggregated spatial distribution, while the community of echinoderms was dominated by one single species. Although only general descriptions can be elucidated with the present results, knowledge about the basic population characteristics and natural history of these reef communities, combined with that of the perturbations related to human activities, provides useful base information for appropriate planning for the restoration and conservation of this ecosystem.

Animals↗

PubMed2002

Cell proliferation during blastema formation in the regenerating teleost fin.

Epimorphic regeneration in teleost fins occurs through the establishment of a balanced growth state in which a blastema gives rise to all the mesenchymal cells, whereas definite areas of the epidermis proliferate leading to its extension, thus, allowing the enlargement of the whole structure. This type of regeneration involves specific mechanisms that temporally and spatially regulate cell proliferation. To understand how the blastema is formed and how this growth situation is set up, we investigated cell proliferation patterns in the regenerating fin of the goldfish Carassius auratus from the time of amputation to that of blastema formation by using proliferating cell nuclear antigen immunostaining and bromodeoxyuridine labeling. Wound closure and apical epidermal cap formation took place by epidermal migration and re-arrangement, without the contribution of cell proliferation. As soon as the apical cap had formed, the epidermis started to proliferate at its lateral surfaces, in which all layers maintained cycling for the duration of the studied process. The distal epidermal cap, on the contrary, presented very few cycling cells, and its cytoarchitecture was indicative of continuous remodeling due to ray growth. The basal layer of this epidermal cap showed a typical morphology and remained nonproliferative whilst in contact with the proliferating blastema. Proliferation in the mesenchymal compartment of the ray started far from the amputation plane. Subsequently, cycling cells approached that location, until they formed the blastema in contact with the apical epidermal cap. Differences observed between the epidermis and mesenchyma, regarding activation of the cell cycle and the establishment of proliferative patterns, suggest that differential mechanisms regulate cell proliferation in each of these compartments during the initial stages of regeneration.

Amputation, Surgical↗

PubMed2003

Formation of whisker-related principal sensory nucleus-based lemniscal pathway requires a paired homeodomain transcription factor, Drg11.

Little is known about the molecular mechanisms underlying the formation of the principal sensory nucleus (PrV) of the trigeminal nerve, a major relay station for somatotopic pattern formation in the trigeminal system. Here, we show that mice lacking Drg11, a homeodomain transcription factor, exhibit defects within the PrV, which include an aberrant distribution of Drg11-/- cells, altered expression of a molecular marker, unusual projections of primary afferents from trigeminal ganglion cells, and, subsequently, increased cell death. In addition, surviving PrV cells exhibit delayed and more spatially restricted ascending projections to the ventral posterior medial nucleus of the thalamus (VPm). These early embryonic abnormalities in the PrV lead to the failure to develop whisker-related patterns in the PrV, VPm, and somatosensory cortex. By contrast, somatotopic patterns exist in the spinal trigeminal subnuclei interpolaris (SpVi) and subnuclei caudalis (SpVc) and the dorsal column nucleus-based lemniscal and cortical pathway. Thus, the deficits in the trigeminal system of Drg11-/- mice are specific to the PrV. Our results demonstrate that Drg11 is essential for proper cellular differentiation and, subsequently, for the formation of the whisker-related lemniscal and cortical structures.

Afferent Pathways↗

PubMed2004

The neural tube patterns vessels developmentally using the VEGF signaling pathway.

Embryonic blood vessels form in a reproducible pattern that interfaces with other embryonic structures and tissues, but the sources and identities of signals that pattern vessels are not well characterized. We hypothesized that the neural tube provides vascular patterning signal(s) that direct formation of the perineural vascular plexus (PNVP) that encompasses the neural tube at mid-gestation. Both surgically placed ectopic neural tubes and ectopic neural tubes engineered genetically were able to recruit a vascular plexus, showing that the neural tube is the source of a vascular patterning signal. In mouse-quail chimeras with the graft separated from the neural tube by a buffer of host cells, graft-derived vascular cells contributed to the PNVP, indicating that the neural tube signal(s) can act at a distance. Murine neural tube vascular endothelial growth factor A (VEGFA) expression was temporally and spatially correlated with PNVP formation, suggesting it is a component of the neural tube signal. A collagen explant model was developed in which presomitic mesoderm explants formed a vascular plexus in the presence of added VEGFA. Co-cultures between presomitic mesoderm and neural tube also supported vascular plexus formation, indicating that the neural tube could replace the requirement for VEGFA. Moreover, a combination of pharmacological and genetic perturbations showed that VEGFA signaling through FLK1 is a required component of the neural tube vascular patterning signal. Thus, the neural tube is the first structure identified as a midline signaling center for embryonic vascular pattern formation in higher vertebrates, and VEGFA is a necessary component of the neural tube vascular patterning signal. These data suggest a model whereby embryonic structures with little or no capacity for angioblast generation act as a nexus for vessel patterning.

Angiogenesis Inhibitors↗

PubMed2006

Cell lineage transport: a mechanism for molecular gradient formation.

Gradient formation is a fundamental patterning mechanism during embryo development, commonly related to secreted proteins that move along an existing field of cells. Here, we mathematically address the feasibility of gradients of mRNAs and non-secreted proteins. We show that these gradients can arise in growing tissues whereby cells dilute and transport their molecular content as they divide and grow, a mechanism we termed 'cell lineage transport.' We provide an experimental test by unveiling a distal-to-proximal gradient of Hoxd13 in the vertebrate developing limb bud driven by cell lineage transport, corroborating our model. Our study indicates that gradients of non-secreted molecules exhibit a power-law profile and can arise for a wide range of biologically relevant parameter values. Dilution and nonlinear growth confer robustness to the spatial gradient under changes in the cell cycle period, but at the expense of sensitivity in the timing of gradient formation. We expect that gradient formation driven by cell lineage transport will provide future insights into understanding the coordination between growth and patterning during embryonic development.

Animals↗

PubMed2006

Geometry and mechanics of teleost gastrulation and the formation of primary embryonic axes.

Examination of normal shaping dynamics and immediate and long-term responses to blastoderm cutting in zebrafish and loach embryos prior to the onset of gastrulation and during the course of epiboly revealed that anteroposterior (AP) and dorsoventral (DV) polarity formation is connected with shaping of the blastoderm circumferential region, which stretches along and shrinks across its movement axes and originates the non-isotropic fields of tensile stresses. Based on data from cutting experiments and quantitative morphology, we reconstructed the movement-shaping patterns of epiboly and embryonic shield formation. We revealed that AP and DV axes originate as a mass cell movement subject to the movement-shaping equivalence principle, which means the spatial series of differently shaped areas corresponding to the time succession of the same area shaping. Maintenance of the main body axes in orthogonal orientation depends on the mechanical equilibrium principle allowing for converting shape asymmetry into that of tensile stresses and vice versa. The causal relationship between the main movement-shaping axes and that of embryonic polarity was proved in cutting experiments in which the DV axis direction was subject to rearrangement so as to adjust to the new direction of mass cell movement axes induced by healing the wound in the blastoderm circumferential region.

Animals↗

PubMed2005

Selective neurotoxic damage to the hippocampal formation impairs performance of the transverse patterning and location memory tasks in rhesus macaques.

Monkeys with neurotoxic (ibotenic acid) damage to the hippocampal formation and unoperated controls were trained on two sets of transverse patterning problems (A+/B-, B+/C-, C+/A-, and D+/E-, E+/F-, F+/D-) and a delayed nonmatching-to-location paradigm (DNML) with delays of 10s, 30s, 120s, and 600s. Hippocampal lesions produced a size- and area-dependent impairment on transverse patterning. Damage largely limited to the right hippocampus in one subject had no effect on performance on the task. Of the remaining four subjects, two with hippocampal damage greater than 40% bilaterally were unable to solve the two transverse patterning sets, but could solve the linear set of discriminations (A+/B-, B+/C-, C+/X-). The two remaining operated animals were impaired in acquisition of both sets, but were eventually able to solve one of the two transverse patterning discrimination sets. All five operated monkeys were impaired relative to normal controls on DNML, but not on the standard delayed nonmatching-to-sample (DNMS) version with trial-unique objects. The results confirm our previous findings (Alvarado et al., Hippocampus 12:421-433, 2002) using aspiration lesions of the hippocampal formation and strengthen the view that the hippocampal formation is critical for object and spatial relational memory.

Animals↗