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Epistatic interaction between vernalization genes Vrn-Am1 and Vrn-Am2 in diploid wheat.

Genes Vrn-A(m)1 and Vrn-A(m)2 control the vernalization requirement in diploid wheat (Triticum monococcum). The epistatic interaction between these two genes on flowering date was studied here using a factorial analysis of variance. One hundred and two F2 plants were classified according to their genotypes for molecular markers tightly linked to Vrn-A(m)1 and Vrn-A(m)2. Mean comparisons showed that the VrnA(m)2 allele for winter growth habit was dominant to the vrn-A(m)2 allele for spring growth habit and that the Vrn-A(m)1 allele for spring growth habit was dominant to the vrn-A(m)1 allele for winter growth habit. A significant interaction was found between these two genes, suggesting that they work in the same developmental pathway. Plants homozygous for the recessive vrn-A(m)2 allele for spring growth habit flowered earlier than plants from the Vrn-A(m)2 class independently of the alleles present at Vrn-A(m)1. However, differences in heading date between plants with the Vrn-A(m)1 allele and those with the vrn-A(m)1 allele were significant only when the dominant Vrn-A(m)2 allele was present. A genetic model for the action of these two vernalization genes is proposed in which the role of Vrn-A(m)1 is to counteract the Vrn-A(m)2-mediated delay of flowering.

Diploidy↗

[Effects of different varieties and sowing dates on development stages of wheat].

The effects of different sowing dates and varieties on development stages of wheat were studied in this paper. The results showed that the emergence of tiller was mainly regulated by the ecological factors rather than the genetic effect. For winter-type variety(Jing 411), most variable growth duration throughout the entire growth cycle occurred from tillering to jointing. In contrast, the timing of single ridge stage was determined by genotypic effect rather than ecological factors. Single ridge to double ridge stage was most sensitive to vernalization progress. For spring sowing of winter-type variety, the vernalization process could last till floral primordium differentiation stage. The corresponding relationships existed between phenological and spike development stages in different sowing dates, although a little variable. Winter-type variety had more ecologically variable leaf primoudia, due to its stronger vernalization requirement. For winter-type variety, the primordium numbers of reproductive organs were not apparently related to the GDD accumulated prior to vernalization completion, while for spring-type variety(Yangmai 158), the numbers of different apex primordia including vegetative and reproductive organs were significantly related to the accumulated GDD during the entire phenological stages as well as before anther separation stage.

Triticum↗

Growth performance of stocker calves backgrounded on sod-seeded winter annuals or hay and grain.

Economically viable options for retaining ownership of spring-born calves through a winter backgrounding program are somewhat limited in the southeastern United States. Although sod-seeded winter annual forages produce less forage than those same forages planted using conventional tillage practices, sod-seeded winter annual forages have the potential to provide a low-cost, rapid-gain, ecologically and economically viable option for retaining ownership of fall-weaned calves. A study was conducted during the winters of 1998, 1999, and 2000 using 180 crossbred calves (261 +/- 2.8 kg initial BW; n = 60 each year) to compare sod-seeded winter annual forages with conventional hay and supplement backgrounding programs in southeast Arkansas. Calves were provided bermudagrass hay (ad libitum) and a grain sorghum-based supplement (2.7 kg/d) on 1-ha dormant bermudagrass pastures or were grazed on 2-ha pastures of bermudagrass/dallisgrass overseeded with 1) annual ryegrass, 2) wheat plus annual ryegrass, or 3) rye plus annual ryegrass at a set stocking rate of 2.5 calves/ha. Calves grazed from mid-December until mid-April but were fed bermudagrass hay during times of low forage mass. Mean CP and IVDMD concentrations were 19.0 and 71.1%, respectively, across sampling dates and winter annual forages, but three-way interactions among forage treatments, year, and sampling date were detected (P < 0.01) for forage mass, concentrations of CP, and IVDMD. The IVDMD of rye plus ryegrass was greater (P < 0.05) than that of ryegrass in yr 2. A forage treatment x sampling date interaction was detected for forage CP in yr 1 (P < 0.05) and 2 (P = 0.05) but not in yr 3 (P = 0.40). Forage mass did not differ (P > or = 0.22) among winter annual treatments on any sampling date. During the first 2 yr, calves fed hay plus supplement gained less (P < 0.05) BW than calves that grazed winter annual forages; gains did not differ (P > or = 0.23) among winter annual treatments. During the 3rd yr, undesirable environmental conditions limited growth of the winter annual forages; total gain did not differ (P = 0.66) among the four treatments. Winter annual forages offer potential to provide high-quality forage for calves retained until spring, but consistent forage production and quality are a concern when sod-seeding techniques are used.

Animal Feed↗

Molecular markers linked to the leaf rust resistance gene Lr24 in different wheat cultivars.

The aim of this study was to find molecular markers (RAPD and SCAR) for the wheat leaf rust resistance gene Lr24. A backcross line, RL 6064, possessing a single resistance gene to leaf rust (Lr24) and its recurrent parent 'Thatcher' were used to find RAPD markers linked to the Lr24 gene. Among 125 RAPD primers tested, only one (OP-H5) detected an additional band in the resistant line RL 6064. The genetic linkage of this molecular marker to Lr24 was tested on a segregating F2 population derived from a cross between the leaf rust resistant line RL 6064 and the susceptible line 'Chinese Spring'. This marker showed complete linkage to the Lr24 resistance gene. A more reliable and specific marker for this resistance gene was made by converting it into a sequence characterized amplified region (SCAR). The presence of a single amplification product allowed direct detection of the gene in the test tube by the addition of ethidium bromide. This SCAR marker linked to the leaf rust resistance gene Lr24 could be used easily in a practical breeding program.

DNA, Plant↗

[Comparative genetic analysis of the hexaploid wheat Triticum petropavlovskyi Udasz. et Migusch. and Triticum aestivum L].

A poorly studied species of hexaploid wheat Triticum petropavlovskyi Udacz. et Migusch. was compared with common wheat Triticum aestivum L. by means of monosomic and genetic analyses of F2 hybrids. Triticum petropavlovskyi was found to carry 13 dominant genes determining its morphological and physiological characters and regular bivalent conjugation of chromosomes. These genes were allelic to the respective genes of common wheat and were located in the same chromosomes. The modes of gene interaction were also the same. There was simple dominance for most genes studied and complementary interaction for the genes of hybrid dwarfism and hybrid necrosis. Triticum petropavlovskyi had the following dominant genes: Hg (downy glume); Rg1 (red glume color); Hl (downy leaf); Hn (downy node); Pa (pubescent auricles); Q (speltlike ears); D1 (grass-clump dwarfism); Ne1 (hybrid necrosis); Ph1 and Ph2 (genes of bivalent conjugation preventing homoeologous chromosomes from pairing); and Vrn1, Vrn2, Vrn3, and Vrn4 (genes of the spring habit). The gene Vrn1, which caused an increase in ear emergence time and a pronounced response to vernalization, was poorly expressed. T. petropavlovskyi was earlier demonstrated to have a species-specific gene P or Eg (elongated glume), which was not allelic to the gene Eg of the tetraploid T. polonicum L. The data obtained indicate that T. petropavlovskyi has originated from T. aestivum via mutations.

Polyploidy↗

[Effects of precipitation and soil moisture on N2O emissions from upland soils in Guizhou].

Soils of corn-rape seed rotation, soybean-winter wheat rotation and fallow land in Guizhou were representatively selected to study effects of precipitation and soil moisture on N2O emissions. Furthermore, DNDC model was used to assess the potential effects of variations in precipitation in future on N2O emissions from above lands. The results indicated that N2O emission pulses were obviously driven by rainfall and N2O fluxes were correlated positively with precipitation and soil moisture. The results from DNDC modeling showed that N2O fluxes from soils in summer and autumn would be correlated positively with precipitation, but N2O fluxes in winter and spring would slightly decrease with great change of precipitation.

Chemical Precipitation↗

Pm34: a new powdery mildew resistance gene transferred from Aegilops tauschii Coss. to common wheat (Triticum aestivum L.).

Powdery mildew is a major fungal disease in wheat growing areas worldwide. A novel source of resistance to wheat powdery mildew present in the germplasm line NC97BGTD7 was genetically characterized as a monogenic trait in greenhouse and field trials using F(2) derived lines from a NC97BGTD7 X Saluda cross. Microsatellite markers were used to map and tag this resistance gene, now designated Pm34. Three co-dominant microsatellite markers linked to Pm34 were identified and their most likely order was established as: Xbarc177-5D, 5.4cM, Pm34, 2.6cM, Xbarc144-5D, 14cM, Xgwm272-5D. These microsatellite markers were previously mapped to the long arm of the 5D chromosome and their positions were confirmed using Chinese Spring nullitetrasomic Nulli5D-tetra5A and ditelosomic Dt5DL lines. Pm2, the only other known Pm gene on chromosome 5D, has been mapped to the short arm and its specificity is different from that of Pm34.

Ascomycota↗

Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.

A major component of the observed genetic variation for pre-harvest sprouting in wheat ( Triticum aestivum L.) appears to be the level of seed dormancy. Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor. The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected. A mapping population in the form of recombinant inbred lines developed from the cross between the highly dormant Zenkoujikomugi (Zen) and Chinese Spring (CS) was utilized. Nineteen marker loci, including taVp1, were mapped on chromosome 3A. The taVp1 locus was located in the middle of the long arm, about 85 cM from the centromere. The population was evaluated in duplicate by growing them under controlled environment conditions. Two QTLs for seed dormancy, designated as QPhs.ocs-3A.1 and QPhs.ocs-3A.2, were identified on the short and long arms, respectively. QPhs.ocs-1 explained 23-38% of the phenotypic variation and the Zen allele had a striking effect on maintaining dormancy. QPhs.ocs-2, with a minor effect, was detectable only at the dormancy-breaking stage. Although QPhs.ocs-2 was loosely linked to taVp1 by around 50 cM, they are clearly distinct genes. Zen and CS carry the white R-A1a allele, and no QTL effect was detected in the vicinity region of R-A1. Hence it was concluded that the high dormancy associated with chromosome 3A of Zen is ascribable to QPhs.ocs-1 on the short arm but is not due to the direct contribution of either the taVp1 or R-A1 locus.

Chromosomes, Plant↗

Pesticide appliers, biocides, and birth defects in rural Minnesota.

Earlier studies by our group suggested the possibility that offspring of pesticide appliers might have increased risks of birth anomalies. To evaluate this hypothesis, 935 births to 34,772 state-licensed, private pesticide appliers in Minnesota occurring between 1989 and 1992 were linked to the Minnesota state birth registry containing 210,723 live births in this timeframe. The birth defect rate for all birth anomalies was significantly increased in children born to private appliers. Specific birth defect categories, circulatory/respiratory, urogenital, and musculoskeletal/integumental, showed significant increases. For the general population and for appliers, the birth anomaly rate differed by corp-growing region. Western Minnesota, a major wheat, sugar beet, and potato growing region, showed the highest rate of birth anomalies per/1000 live births: 30.0 for private appliers versus 26.9 for the general population of the same region. The lowest rates, 23.7/1000 for private appliers versus 18.3/1000 for the general population, occurred in noncorp regions. The highest frequency of use of chlorophenoxy herbicides and fungicides also occurred in western Minnesota. Births in the general population of western Minnesota showed a significant increase in birth anomalies in the same three birth anomaly categories as appliers and for central nervous system anomalies. This increase was most pronounced for infants conceived in the spring. The seasonal effect did not occur in other regions. The male/female sex ratio for the four birth anomaly categories of interest in areas of high phenoxy herbicide/fungicide use is 2.8 for appliers versus 1.5 for the general population of the same region (p = 0.05). In minimal use regions, this ratio is 2.1 for appliers versus 1.7 for the general population. The pattern of excess frequency of birth anomalies by pesticide use, season, and alteration of sex ratio suggests exposure-related effects in appliers and the general population of the crop-growing region of western Minnesota.

Abnormalities, Drug-Induced↗

Weight, carcase composition and reproductive performance of pheasants (Phasianus colchicus) fed restricted or unrestricted diets.

Artificially reared hen pheasants, released in summer, are reported to have little reproductive success in the wild the following spring. One possible explanation is that such birds are unable to obtain an adequate diet after supplementary feeding ceases in February. When captive hen pheasants were fed an unrestricted diet they maintained constant muscle mass and fat reserves throughout the laying period. Hens restricted to pre-lay maintenance levels of nutrition after photostimulation initially laid good quality eggs at the same rate as the fully fed hens. However, by the time that they had laid the equivalent of one clutch of eggs, their energy reserves were approaching exhaustion, suggesting that they would have been incapable of incubating the eggs successfully. When fully fed hens were given wheat in place of a breeder diet, they quickly stopped laying but recovered equally quickly when fed a balanced ration again.

Animals↗

Soil activity and persistence of sulcotrione and mesotrione.

Greenhouse bioassays were set up using a small pot test method to determine the intrinsic sensitivity of different plant species to sulcotrione and mesotrione applied in a sandy loam soil. Herbicides were applied over an appropriate concentration range. After a 2-3 week test period, foliage fresh weight was determined. Data were subjected to a non-lineair regression analysis. Using the regression equations, ED50-values (herbicide concentrations that cause 50 percent foliage fresh weight reduction) were calculated for each combination of crop species and herbicide. To determine which replacement crops might be grown in case of failure of a crop treated with one of these herbicides, field persistence experiments were conducted over the 1993-2003 period for sulcotrione and the 1998-2003 period for mesotrione at the Experimental Farm, Biocentre Agri-Vet, Ghent University at Melle. Herbicides were applied in spring (about mid-March) on a bare soil; untreated control strips were included. Replacement crops were sown or planted approximately five weeks after herbicide applications. Visual estimations of crop injury were recorded at several intervals from sowing and fresh matter yield of plant parts was determined. Based on these data, crops were ranked according to their degree of sensitivity to either sulcotrione or mesotrione. Maize is very tolerant to both herbicides, although in some years, temporary injury could be seen in the field experiments. Italian rye-grass and fibre flax are tolerant crops; in field experiments a slight, temporary injury could be noticed in some years. Winter wheat displayed a high degree of tolerance to mesotrione (in both experiment types): however this crop was less tolerant to sulcotrione especially in the bioassay experiment. Based on its ED50-value, black salsify is tolerant to sulcotrione but under field conditions, the selectivity of this herbicide is quite variable; tolerance to mesotrione is moderate. Turnip and witloof chicory are clearly sensitive to mesotrione and sulcotrione whereas sugar beet, red clover and lettuce are extremely sensitive to both herbicides in both experiment types. Bioassays and field experiments provide a detailed and complete information about soil activity and persistence of both herbicides.

Belgium↗

Mapping QTLs for grain dormancy on wheat chromosome 3A and the group 4 chromosomes, and their combined effect.

A major QTL for grain dormancy, QPhs.ocs-3A.1, derived from the highly dormant wheat Zenkoujikomugi (Zen), has been identified in a study made under a controlled environment. Further investigations were needed to dissect the precise position and expression of QPhs.ocs-3A.1 under different field conditions because the ability to detect genetic loci for grain dormancy traits is compromised by environmental effects and genotype/environment interactions. Group 4 chromosomes have also been shown to be possible sites of QTLs for grain dormancy. The objectives of this study were (1) to locate additional molecular markers in the QPhs.ocs-3A.1 region, (2) to identify QTLs on the group 4 chromosomes and (3) to elucidate their combined effects. We examined the recombinant inbred lines (RILs) from a cross between Chinese Spring (CS) and Zen over a 3-year period in one location and 1 year in a different location. In an interval mapping study QPhs.ocs-3A.1 was mapped to within the 4.6 cM region flanked by Xbarc310 and Xbcd907 at the proximal end of the short arm of chromosome 3A. QPhs.ocs-3A.1 was confirmed to be the predominant dormancy QTL since it explained a large portion (11.6-44.8%) of the phenotypic variation, and was strongly displayed under dormancy-breaking conditions or at low germination temperatures. For QPhs.ocs-4A.1, identified on the long arm of chromosome 4A, and QPhs.ocs-4B.1, on the centromeric region of the long arm of Chr 4B, the LOD peak positions and the desirable allele were consistent between the trials, while the LOD scores and contribution to the phenotypic variation varied. Transgressive segregants were observed among the 125 RILs and most of them had a combination of the three alleles conferring a higher dormancy: the Zen alleles at QPhs.ocs-3A.1 and QPhs.ocs-4A.1 and the CS allele at QPhs.ocs-4B1. This demonstrated a combined effect of the desirable alleles on accelerating grain dormancy, with their total effect being superior to that of Zen.

Chromosome Mapping↗

Comparison of genetic and physical maps of group 7 chromosomes from Triticum aestivum L.

We present a high density physical map of homoeologous group 7 chromosomes from Triticum aestivum L. using a series of 54 deletion lines, 6 random amplified polymorphic DNA (RAPD) markers and 91 cDNA or genomic DNA clones from wheat, barley and oat. So far, 51 chromosome segments have been distinguished by molecular markers, and 54 homoeoloci have been allocated among chromosomes 7A, 7B and 7D. The linear order of molecular markers along the chromosomes is almost identical in the A- B- and D-genome of wheat. In addition, there is colinearity between the physical and genetic maps of chromosomes 7A, 7B and 7D from T. aestivum, indicating gene synteny among the Triticeae. However, comparison of the physical map of chromosome 7D from T. aestivum with the genetic map from Triticum tauschii some markers have been shown to be physically allocated with distortion in more distal chromosome regions. The integration of genetic and physical maps could assist in estimating the frequency and distribution of recombination in defined regions along the chromosome. Physical distance did not correlate with genetic distance. A dense map facilitates the detection of multiple rearrangements. We present the first evidence for an interstitial inversion either on chromosome arm 7AS or 7DS of Chinese Spring. Molecularly tagged chromosome regions (MTCRs) provide landmarks for long-range mapping of DNA fragments.

Blotting, Southern↗

Spatiotemporal clustering and association of Ephestia kuehniella (Lepidoptera: Pyralidae) and two of its parasitoids in bulk-stored wheat.

To assess the spatiotemporal distribution of insects in a flat storage containing wheat (Triticumn spp.), probe traps were suspended in the wheat bulk and inspected for captured insects at 15-d intervals, from June 2001 to August 2002. The grain bulk was 1 m in height, and traps were placed at the upper and the lower 0.5 m of the bulk. During the entire trapping period, 17 insect taxa were recorded. The most abundant species were Ephestia kuehniella Zeller (Lepidoptera: Pyralidae) and its larval parasitoids Harbobracon hebetor (Say) (Hymenoptera: Braconidae) and Venturia canescens (Gravenhorst) (Hymenoptera: Ichneumonidae). Most individuals were found in the upper bulk part. The highest E. kuehniella trap catches were found between August and November 2001 and during June and July 2002. Of the two parasitoids, H. hebetor was more abundant than V. canescens, with the exception of winter and early spring, when both species occurred at low numbers, especially H. hebetor. Spatial analysis by distance indices (SADIE) spatiotemporal analysis showed significant clustering of species, especially during summer and autumn. Early in the season and during spring 2002, at low host numbers, V. canescens occupied the locations where E. kuehniella mainly aggregated, but with the increase of E. kuehniella population, H. hebetor occupied these host groups and replaced V canescens. Although the two parasitoids competed for the same host species, both species coexisted in the storage facility during the entire trapping period.

Animals↗

Rye chromosome variability in wheat-rye addition and substitution lines.

In a study of polymorphism and stability in rye chromosomes, three rye varieties and the sets of wheat-rye addition and substitution lines were compared using two non-homologous highly repetitive DNA families, pSc200 and pSc250. The rye varieties, Petkus, Imperial and Onohoiskaya, showed polymorphism for the presence and the size of the pSc200 in-situ hybridization signals on chromosome pairs, 2R, 4R and 7R, and the pSc250 signals on chromosomes, 5R, 6R and 7R. Chromosome 1R was heteromorphic within the Onohoiskaya variety. Differences in the distribution of chromosome polymorphisms imply that intervarietal changes to these highly repetitive DNA families occurred independently, despite their juxtaposition or even overlapping locations in subtelomeric heterochromatic regions. In the set of Saratovskaya 29 wheat/Onohoiskaya substitution lines, only chromosome 2R was altered relative to its counterpart in the parental rye variety due to amplification of the pSc250 signal on the long arm, although this did not exceed intervarietal polymorphism. In the set of Chinese Spring wheat/Imperial addition lines, only two Imperial chromosomes, 4R and 6R, were unchanged. We detected the loss of one or both rye homologous chromosomes, the loss of one arm, and the deletion of subtelomeric heterochromatin accompanied by the loss of the pSc200 signal. The results show that Saratovskaya 29/Onohoiskaya chromosome substitution lines possess increased chromosome stability compared with Chinese Spring/Imperial addition lines.

Chimera↗

Suppression subtractive hybridization analysis of Ms2 near-isogenic lines of wheat reveals genes differentially expressed in spikelets and anthers.

The dominant male sterility gene Ms2 in wheat has been widely used in recurrent selection and variety improvement. Identification of genes associated with the male sterility in Ms2-carrying wheat will help us understand how Ms2 functions. Using a pair of isogenic lines of Ms2, subtractive hybridization was conducted with cDNA from bulked spikelets at meiophase of sterile plants as the tester and cDNA from the same tissues of fertile plants as the driver. Two major bands at 270 bp and 450 bp were obtained by suppression PCR (polymerase chain reaction) of the subtractive cDNA. A total of 882 recombinants from PCR product cloning were isolated for reverse Northern analysis. The results demonstrated that up to 90% of the inserts in the library were up-regulated in the sterile spikelets. Twenty-one unique inserts from this library were sequenced. Similarity search showed that eighteen of them were homologous to ESTs (expression sequence tags) derived from spike or anther tissues at meiophase. The chromosome locations of nine of the ESTs were determined using C.S. (Chinese spring) nulli-tetrasomic lines, one of which was assigned to chromosome group 4 that includes chromosome 4D where Ms2 is located. In addition, four additional ESTs could also be assigned to this group according to their homology to BACs (bacterial artificial chromosomes) or PAC (P1 artificial chromosomes) of rice chromosome 3. The expression patterns of eight of the inserts examined displayed increased expression in spikelets and anthers of the sterile plants.

Blotting, Northern↗

Quantification of benzoxazinone derivatives in wheat (Triticum aestivum) varieties grown under contrasting conditions in Denmark.

Three varieties of winter wheat (Triticum aestivum) were grown in both conventional and organic farming systems. The contents of the benzoxazinone derivatives 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA), 2-beta-d-glucopyranosyloxy-4-hydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA-Glc), 6-methoxybenzoxazolin-2-one (MBOA), 2-hydroxy-7-methoxy-1,4-benzoxazin-3-one (HMBOA), benzoxazolin-2-one (BOA), and 2-hydroxy-1,4-benzoxazin-3-one (HBOA) were analyzed at five growth stages (BBCH 9-10, 12, 21, 31, and 53). Major differences were found between the varieties, with Stakado exhibiting the highest contents. In contrast, only minor and erratic differences were found between the two farming systems, suggesting that the inherent differences in the content of benzoxazinone derivatives of the varieties were not significantly affected by the use of pesticides and synthetic fertilizers. The concentration of benzoxazinone derivatives in the foliage was considerably higher at the early growth stages than later in the growing season, with DIMBOA being the most abundant of the benzoxazinone derivatives. An increase in the concentration was observed in early spring compared to late autumn, suggesting that plants synthesized benzoxazinone derivatives at the commencement of growth in early spring. The concentrations in the roots were considerably lower than in the foliage at the early growth stages but remained relatively constant over time, resulting in a higher concentration than in the foliage at the late growth stages. The results are discussed in relation to previous findings that predominantly originate from experiments done under controlled conditions in either growth cabinets or greenhouses.

Benzoxazines↗

Molecular cloning, sequencing, and chromosome mapping of a 1A-encoded omega-type prolamin sequence from wheat.

Gliadins are the most abundant component of the seed storage proteins in cereals and, in combination with glutenins, are important for the bread-making quality of wheat. They are divided into four subfamilies, the alpha-, beta-, gamma-, and omega-gliadins, depending on their electrophoresis pattern, chromosomal location, and DNA and protein structures. Using a PCR-based strategy we isolated and sequenced an omega-gliadin sequence. We also determined the chromosomal subarm location of this sequence using wheat aneuploids and deletion lines. The gene is 1858 bp long and contains a coding sequence 1248 bp in length. Like all other gliadin gene families characterized in cereals, the omega-gliadin gene described here had characteristic features including two repeated sequences 300 bp upstream of the start codon. At the DNA level, the gene had a high degree of similarity to the omega-secalin and C-hordein genes of rye and barley, but exhibited much less homology to the alpha- and beta-gliadin gene families. In terms of the deduced amino acid sequence, this gene has about 80 and 70% similarity to the omega-secalin and C-hordein genes, respectively, and possesses all the features reported for other gliadin gene families. The omega-gliadin gene has about 30 repeats of the core consensus sequences PQQPX and XQQPQQX, twice as many as other gliadin gene families. Southern blotting and PCR analysis with aneuploid and deletion lines for the short arm of chromosome 1A showed that the omega-gliadin was located on the distal 25% of the short arm of chromosome 1A. By comparison of PCR and A-PAGE profiles for deletion stocks, its genomic location must be at a different locus from gli-Ala in 'Chinese Spring'.

Amino Acid Sequence↗